BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493746
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37690.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1812 0.0
> AT5G37690.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr5:14973353-14976169 REVERSE LENGTH=1382
Length=1382
Score = 1812 bits (981), Expect = 0.0
Identities = 1122/1190 (94%), Gaps = 10/1190 (1%)
Strand=Plus/Plus
Query 1 GTCCAAATTAGAGAACAAGTAACTGATCAAGAAAGAGTGAAATCCACATAAAACACAATG 60
||||||||||||||| ||||||| ||||||| |||||||||| ||| |||||||||||
Sbjct 1 GTCCAAATTAGAGAATAAGTAAC---TCAAGAAGGAGTGAAATCAACACAAAACACAATG 57
Query 61 ATGATCCTAAGGCTGGCTCTAGCCATCATCATCTCCGCCTATGCAACCGCACAACCAGCC 120
|||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 58 ATGATCCTTAGGCTGGCTCTAGCCATCGTCATCTCCACCTATGCAACCGCACAACCAGCA 117
Query 121 TCAACGTCGTCGCTTGTAACCTATATATTCGGCGACTCGCTAACCGAAGTTGGTAACAAC 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCAACATCGTCGCTTGTAACCTATATATTCGGCGACTCGCTAACCGAAGTTGGTAACAAC 177
Query 181 AATTAT-TTGCAATATTCGCTAGCAAGAGCAGACTTTCCATATTATGGAGTTGATTTCTC 239
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AATT-TCTTGCAATATTCGCTAGCAAGAGCAGACTTTCCATATTATGGAGTTGATTTCTC 236
Query 240 TGGCGGTAAAGTTACCGGAAGATTCACCAACGGTCGGACTATCGGCGATATCATATCTAC 299
|| ||||||| |||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 237 CGGTGGTAAAGCTACCGGAAGATTCACCAACGGTAGAACTATCGGCGATATCATATCTAC 296
Query 300 AAAGCTTGGGATTCCATCGCCACCACCATATCTATCGTTATCACAAAACGACGATGCATT 359
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAGCTCGGGATTCTATCGCCACCACCATATCTATCGTTATCACAAAACGACGATGCATT 356
Query 360 TCTCAGTGGTATTAATTACGCATCCGGAGGAGCTGGAATTCTCAATGAAACTGGCATTTA 419
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 357 TCTCAGTGGTATAAATTACGCATCTGGAGGAGCTGGAATTCTCAATGAAACTGGCATTTA 416
Query 420 CTTTATCCAAAGGCTGACGTTCAATGATCAAATAAATTGTTTCAAGAAATCTAAAGAAGT 479
||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 417 CTTCATCCAAAGGCTAACTTTCAATGATCAAATAAATTGTTTCAAGAAAACTAAAGAAGT 476
Query 480 TATTAGGGCGAAAATCGGAGATGGAGCTGCGAACAAGCATGTAAATGATGCCATGTACTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TATTAGGGCGAAAATCGGAGATGGAGCTGCGAACAAGCATGTAAATGATGCCATGTACTT 536
Query 540 CATTGGTTTGGGAAGCAACGATTATGTAAACAATTTCTTGCAGCCATTTATGGCAGATGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CATTGGTTTGGGAAGCAACGATTATGTAAACAATTTCTTGCAGCCATTTATGGCAGATGG 596
Query 600 GCAGCAATATACACATGACGAGTTTGTCGAACTCTTGACCTCAACCCTAGACAATCAGCT 659
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 GCAGCAATATACACATGACGAGTTTGTCGAACTCTTGACCTCAACCCTACACAATCAGCT 656
Query 660 TACGACAATATACAAATTAGGAGCGAGGAAAGTAATATTTCATGGGCTAGGTCCATTGGG 719
|||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 657 TACGACAATATACAAATTAGGAGCGAGGAAGGTAATATTTCATGGGTTAGGCCCATTGGG 716
Query 720 CTGTATCCCATCACAAAGAGTGAAGTCGAAGACAGGCATGTGCCTTAAGCGTGTCAACGA 779
||||||||||||||| ||||||||||| |||||| |||||||||| || |||||||||||
Sbjct 717 CTGTATCCCATCACAGAGAGTGAAGTCAAAGACACGCATGTGCCTGAACCGTGTCAACGA 776
Query 780 GTGGGTATTGGAATTCAACTCAAGAACGAAGAAGCTTCTTC-TAGATCTCAACAAACGCC 838
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 777 ATGGGTATTGGAATTCAATTCAAGAACGAAGAAGCTA-TTAATAGATCTCAACAAACGCC 835
Query 839 TTCCCGGAGCTAAATTCGCCTTCGCCGATACTTATCCTGCCGTTCTCGACCTCATCAACA 898
| ||||||||||||||| | ||||| || |||||||| ||||||||||| ||||||||||
Sbjct 836 TCCCCGGAGCTAAATTCTCTTTCGCAGACACTTATCCCGCCGTTCTCGATCTCATCAACA 895
Query 899 ATCCTACTCACTACGGGTTTAAGATATCAAACACGTCGTGTTGCAATGTGGATACAAGTG 958
|||| ||||||||||| ||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 896 ATCCCACTCACTACGGATTTAAGATAGCAAACACGTCATGTTGCAATGTGGACACAAGTG 955
Query 959 TTGGAGGTCTTTGTCTTCCCAATTCTAAGATGTGTAAAAATCGTGAAGACTTTGTCTTCT 1018
||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 956 TTGGAGGTCTTTGTCTTCCCAATTCCAAGATGTGTAAAAACCGTCAAGACTTTGTCTTCT 1015
Query 1019 GGGACGCATTTCATCCGTCCGATTCGGCTAATCAAATCCTAGCCGATCAtcttttctcct 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1016 GGGACGCATTTCATCCGTCCGATTCGGCTAATCAAATCCTAGCCGATCATCTTTTCTCTT 1075
Query 1079 ctcttctttcttcctcttctccttctcctgctcctAAACCACGTCATTAGTATAGTATTT 1138
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct 1076 CTCTTCTTTCTTCCTCTTCTCCTTCTCCTGCTCCTAAACCACGTCAATAGTTTAGCATTT 1135
Query 1139 ACAAAAATAAAAATA-TTAAACCAACTTCTTGTTAAATTGGTCCTACTTG 1187
||||||||||||| | |||| |||| || |||||||||||| ||||||||
Sbjct 1136 ACAAAAATAAAAACAGTTAA-CCAATTT-TTGTTAAATTGGACCTACTTG 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60692458905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5