BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493747
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28672.1 | Symbols: | transposable element gene | chr5:1070... 821 0.0
AT5G28667.1 | Symbols: | pseudogene, hypothetical protein | ch... 763 0.0
AT5G28712.1 | Symbols: | transposable element gene | chr5:1076... 374 1e-102
AT2G07486.1 | Symbols: | transposable element gene | chr2:3117... 224 1e-57
> AT5G28672.1 | Symbols: | transposable element gene | chr5:10700385-10701826
FORWARD LENGTH=1442
Length=1442
Score = 821 bits (444), Expect = 0.0
Identities = 585/650 (90%), Gaps = 22/650 (3%)
Strand=Plus/Plus
Query 306 AATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGTAATATGTGATATAAA 365
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 598 AATGTATTGGAATCGACACGATAGAACATCGTTTAATATCAAGGCCATATGTGATATAAA 657
Query 366 TATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGTGTCACGATACAGCAGTTCT 425
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 658 TATGTTGTTTACATATGTTTGGAATGGAGCACTTGGATCGTGCCACGATACAGTAGTTCT 717
Query 426 AACTATGGCACAAGATAATGATTCTGAATTTTCTTTGCCTCCAAGAGACAACTATTATAA 485
||| ||||||||||||||||||||||||||| |||||||||| |||| ||||
Sbjct 718 AACGATGGCACAAGATAATGATTCTGAATTTCCTTTGCCTCCTAGAG---------ATAA 768
Query 486 CTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCACCTTATAGATT 545
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 769 GTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCATCTTATCGATC 828
Query 546 TTCGCGGAACGGAGTTGTTAAGTATCACATGTCACAGTTCTACAATGGTCCTCCTCCTAG 605
|||||||||| ||||| || |||||||||||||||| |||||||||||||||||| |||
Sbjct 829 TTCGCGGAACAGAGTT-TTCGGTATCACATGTCACAGCTCTACAATGGTCCTCCTCTTAG 887
Query 606 GAATAAACAGGAGTTGTTTAATCGATGTCATGCATCTCTACGTTCTGTTATTGAGAGGAC 665
|||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 888 AAATAAACATGAGTTGTTTAATCGATGTCATGCATCTTTACGTTCTGTTATTGAAAGGAA 947
Query 666 ATTTGGAGTTTGGAAGAAAAAATGGAGCATTCTTTGTGAA-TTCCCAGATATGATATTGA 724
| ||||||||||||||||||||||||| ||||||| |||| || | ||||||||||||||
Sbjct 948 AATTGGAGTTTGGAAGAAAAAATGGAGGATTCTTTATGAATTTTCTAGATATGATATTGA 1007
Query 725 TGTTCAATAAAGAGTGGTAACGGCTACAATTG-GACTACATAATTTTATCAGAATTTCGA 783
||| ||| ||| |||||||||| |||||| || |||||||||| ||||||||||| ||||
Sbjct 1008 TGTCCAAAAAACAGTGGTAACGACTACAA-TGTGACTACATAACTTTATCAGAATGTCGA 1066
Query 784 ATTATTTTGATGAGGATTTTGTTGAAGTAATGGGAGATAAAAATATCAACAACGTAAATT 843
|||||||||| ||| |||||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct 1067 ATTATTTTGACGAGAATTTTGTTGAAGTAATAGGAGATACAAATATCAACAACATAAATT 1126
Query 844 CTGAGAATGATCTTGATGACATGGAGAGAGGTAGTAGGTAGTATACCTGACGGAAATCAT 903
||||||||||||| |||||| || ||| | | | || |||||||||| |||||||||
Sbjct 1127 CTGAGAATGATCTAGATGAC--CGA-AGA-G-A--A-GTGGTATACCTGATGGAAATCAT 1178
Query 904 ATGGC-AAATATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAA 952
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 ATGGCAAAATATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAA 1228
Score = 326 bits (176), Expect = 3e-88
Identities = 199/210 (95%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 1 GAATGTCTCTTGATTGTTTTAGATCATTATGTGACATAATGGAAACACGTTATGGATTAC 60
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 225 GAATGTCTCTGGATTGTTTTAGATCATTATGTGACATAATGGAAACAAGTTATGGATTA- 283
Query 61 A-ACCTACATTGAATGTTCGCATTGAAGAGAGTGTTGTCATGTTTTTACGGATATGTGGA 119
| |||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||
Sbjct 284 ATTCCTACAATGAATGTTAGTATTGAAGAGAGTGTTGCCATGTTTTTACGGATATGTGGA 343
Query 120 CACAATGAAGTTCAAAGAGATGTTGGGTTACGATTTGGACGAACGCAAGAAACAGTGAAT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CACAATGAAGTTCAAAGAGATGTTGGGTTACGATTTGGACGAACGCAAGAAACAGTGAAT 403
Query 180 CGGAAATTTTTTGAAGTCCTTAGAGCAACA 209
| |||||||||||||||||||||||| |||
Sbjct 404 CAGAAATTTTTTGAAGTCCTTAGAGCGACA 433
> AT5G28667.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10690062-10691087 FORWARD LENGTH=1026
Length=1026
Score = 763 bits (413), Expect = 0.0
Identities = 576/652 (88%), Gaps = 22/652 (3%)
Strand=Plus/Plus
Query 306 AATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGTAATATGTGATATAAA 365
||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 347 AATGTATTGGAATTGACACGATAGAACATCATTTAATATCATGGCCGTATGTGATATAAA 406
Query 366 TATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGTGTCACGATACAGCAGTTCT 425
|||||||||| |||||||||| ||| |||||| |||||||||||||||||||| ||||||
Sbjct 407 TATGTTGTTTTCATATGTTTGAAATAGAGCACATGGATCGTGTCACGATACAGTAGTTCT 466
Query 426 AACTATGGCACAAGATAATGATTCTGAATTTTCTTTGCCTCCAAGAGACAACTATTATAA 485
||| |||| |||||||||||||| ||||||| |||||||||| |||| || ||
Sbjct 467 AACGATGGTACAAGATAATGATTATGAATTTCCTTTGCCTCC--TAGAC-AC------AA 517
Query 486 CTATTATGTAGTTGATTCTGGGTATCCAAATAAACAAGGCTTTTTGGCACCTTATAGATT 545
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GTATTATGTAGTTGATTTTGGGTATCCAAATAAACAAGGCTTTTTGGCACCTTATAGATC 577
Query 546 TTCGCGGAACGGAGTTGTTAAGTATCACATGTCACAGTTCTACAATGGTCCTCCTCCTAG 605
|||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 578 TTCGCGGAACAGAGTTGTTAAGTATCACATGTCACAGTTCTACAATGTTCCTTCTCTTAG 637
Query 606 GAATAAACAGGAGTTGTTTAATCGATGTCATGCATCTCTACGTTCTGTTATTGAGAGGAC 665
||||||||| |||||||||||||||||||||||| | | || ||||| |||||
Sbjct 638 GAATAAACAAGAGTTGTTTAATCGATGTCATGCA--TGAAAAATC---AATTGAAAGGAC 692
Query 666 ATTTGGAGTTTGGAAGAAAAAATGGAGCATTCTTTGTGAA-TTCCCAGATATGATATTGA 724
| |||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 693 AATTGGAGTTTGAAAGAAAAAATGGAGGATTCTTTGTGAATTTCCCAGATATGATATTGA 752
Query 725 TGTTCAATAAAGAGTGGTAACGGCTACAATTGGACTACATAATTTTATCAGAATTTCGAA 784
||||||| ||||||||||||| |||||| |||||| ||||||||||||| ||||||||
Sbjct 753 TGTTCAAAAAAGAGTGGTAACAATTACAATGGGACTATATAATTTTATCAGGATTTCGAA 812
Query 785 TTATTTTGATGAGGATTTTGTTGAAGTAATGGGAGATAAAAATATCAACAACGTAAATTC 844
||||||||| ||| |||||| ||||| |||| || ||| |||||||||||||||||||||
Sbjct 813 TTATTTTGACGAGAATTTTGATGAAGGAATGAGAAATACAAATATCAACAACGTAAATTC 872
Query 845 TGAGAATGATCTTGATGACATGGAGAGAGGTAGTAGGTAGTATACCTGACGGAAATCATA 904
|||||||||||| |||||||||||||||||| | | || || ||||| | |||| |||
Sbjct 873 TGAGAATGATCTAGATGACATGGAGAGAGGT-G--G-TA-TA--CCTGATGAAAATTATA 925
Query 905 TGGCAAATATAAGAGAAAATATTGCTGATATGTTATGGGCAAATCAAAATAC 956
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 926 TGGCAAATATAAGAAAAAATATTGTTGATATGTTATGGGCAACTCAAAATAC 977
Score = 311 bits (168), Expect = 9e-84
Identities = 267/313 (85%), Gaps = 14/313 (4%)
Strand=Plus/Plus
Query 1 GAATGTCTCTTGATTGTTTTAGATCATTATGTGACATAATGGAAACACGTTATGGATTAC 60
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 10 GAATGTCTCTTGATTGTTTTAGATCAATATGTGACATAATGGAAACAAGTTATGGATTAC 69
Query 61 AACCTACATTGAATGTTCGCATTGAAGAGAGTGTTGTCATGTTTTTACGGATATGTGGAC 120
||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 70 AACCTACATTGAATGTTAGCATTGAAGAGTGTGTTGCCATGTTTTTACGGATATGTGGAT 129
Query 121 ACAATGAAGTTCAAAGAGATGTTGGGTTACGATTTGGACGAACGCAAGAAACAGTGA-AT 179
||||||||| |||||||||||||||||| |||||| ||| || | | |||| |
Sbjct 130 ACAATGAAGGTCAAAGAGATGTTGGGTTGCGATTTTTT-GAAGGCCTTAGA--GTGACAA 186
Query 180 CGGAAATTT-TT-TGAA-GTCCTTA-GA-GC-AACAGA-ACAAGAACTACGTCAAATTCC 232
| | || || ||| || | | || || |||| | |||||||||||||| |||||
Sbjct 187 AGTTACTTGCTTGTGATTGTA-TCAAGACGCCAACA-ACACAAGAACTACGTCGAATTCA 244
Query 233 TGAAAAACTACAAATGGATAGAAGATATTGGCCATATTTCAGTGTATTTGTTGGAGCTAT 292
||||||| ||||||||||| ||||||||||| ||||||| |||| |||||||||||||||
Sbjct 245 TGAAAAAGTACAAATGGATCGAAGATATTGGTCATATTTTAGTG-ATTTGTTGGAGCTAT 303
Query 293 AGATGAAGTTCAT 305
||||| |||||||
Sbjct 304 AGATGGAGTTCAT 316
> AT5G28712.1 | Symbols: | transposable element gene | chr5:10760797-10762070
REVERSE LENGTH=1274
Length=1274
Score = 374 bits (202), Expect = 1e-102
Identities = 413/510 (81%), Gaps = 34/510 (7%)
Strand=Plus/Plus
Query 306 AATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGTAATATGTGATATAAA 365
|||||||||||||| ||| |||| |||||| ||||| ||||||| |||||||||| ||||
Sbjct 585 AATGTATTGGAATCAACATGATATAACATCTTTTAACATCATGGCAATATGTGATCTAAA 644
Query 366 TATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGTGTCACGATACAGCAGTTCT 425
|||||| || ||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 645 TATGTTATTCACATATGTTTGGAATGGAGCACCTGGATCATGTCATGATACAACAGTTCT 704
Query 426 AACT-ATGGCACAAGATAA-TGATTCTGAATTTTCTTTGCCTCCAAG-AGACAACTATTA 482
| ||||||||| | || |||| |||||||| | ||||||| | |||||| || ||
Sbjct 705 TG-TGATGGCACAAAAAAAATGATCCTGAATTTCCAATGCCTCCG-GCAGACAAGTACTA 762
Query 483 TAACTATTATGTAGTTGATTCTGGGTATCCAAATA-AACAAGGCTTTTTGGCACCT-TAT 540
| | | |||| ||||||| |||||| ||| || |||| |||||| | ||| ||
Sbjct 763 TG--T-T---GTAG---ATTCTGGATATCCATATATAA-AAGGATTTTTGAC-CCTGTAC 811
Query 541 AGAT-TTTCGCGGAAC-GGAGTTGTTAAGT-ATCACATGTCACAGTTCTA-CAATGGTCC 596
|||| ||| || ||| ||| | || |||| |||| |||||||| || || || | ||
Sbjct 812 AGATCTTTA-CGAAACAGGA-TAGT-AAGTTATCATATGTCACAATT-TAACACTAATCA 867
Query 597 TCCTCCTAGGAATAAACAGGAGTTGTTTAATCGATGTCATGCATCTCTACGTTCTGTTAT 656
|||||| ||||||||||| || ||||||||| |||| ||||| ||| | || ||||||||
Sbjct 868 TCCTCCGAGGAATAAACATGAATTGTTTAATAGATGGCATGCTTCTTTGCGGTCTGTTAT 927
Query 657 TGAGAGGACATTTGGAGTTTGGAAGAAAAAATGGAGCATTCTTTGTGAA-TTCCC-AGAT 714
||||||||||||||| |||||||||||||| ||||| ||||||| | || ||||| ||||
Sbjct 928 TGAGAGGACATTTGGTGTTTGGAAGAAAAAGTGGAGGATTCTTTCT-AAGTTCCCTAGAT 986
Query 715 ATGAT-ATTGATGTTCAATAAAGAGTGGTAACGGCTACAATTGGACTACATAATTTTATC 773
|| || ||||| || ||| ||| |||||||| |||||||| |||||||| ||||||||
Sbjct 987 AT-ATTATTGAAGTGCAA-AAATAGTGGTAATTGCTACAATGGGACTACAAAATTTTATT 1044
Query 774 AGAATTTCGAATTATTTT-GATGAGGATTT 802
|||||||| |||| || ||||| |||||
Sbjct 1045 AGAATTTCAAATT-TTCCAGATGAAGATTT 1073
> AT2G07486.1 | Symbols: | transposable element gene | chr2:3117080-3117673
REVERSE LENGTH=594
Length=594
Score = 224 bits (121), Expect = 1e-57
Identities = 237/290 (82%), Gaps = 19/290 (7%)
Strand=Plus/Plus
Query 436 CAAGATAATGATTCTGAATTTTCTTTGCCTCCAAGAGACAACTATTATAACTATTATGTA 495
||||| |||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 317 CAAGACAATGATTCTGAATTTTCTTTGCCTCCAACAGACAACTATTAT---------GTA 367
Query 496 GTTGATTCTGGGTATCCAAATAAACAAGGCTTTT--TGGCACCTTATAGATTTTCGCGGA 553
|||||||| || |||||| | |||||| |||| || | || |||| |||||| || |
Sbjct 368 GTTGATTCCGGCTATCCACA-AAACAAAA-TTTTCCTG-CTCCGTATAAATTTTCACGAA 424
Query 554 AC-GGAGTTGTTAAGTATCACATGTCACAGTTCT-ACAATGGTCCTCCTCCTAGGAATAA 611
| ||| | || ||||||| | |||||| || | | ||||||||||||||||| ||||
Sbjct 425 ATAGGAATA-TTCAGTATCATACGTCACAATT-TGAAAATGGTCCTCCTCCTAGAAATAG 482
Query 612 ACAGGAGTTGTTTAATCGATGTCATGCATCTCTACGTTCTGTTATTGAGAGGACATTTGG 671
|| || ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||
Sbjct 483 GCATGAATTGTTTAATCGATTTCATGCATCTTTACGTTCTGTGATTGAGAGAACATTTGG 542
Query 672 AGTTTGGAAGAAAAAATGGAGCATTCTTTGTGAATTCCCAG-ATATGATA 720
| ||||||||||||||||||| |||||||||||||| ||| |||| |||
Sbjct 543 AATTTGGAAGAAAAAATGGAGGATTCTTTGTGAATTTTCAGGATATAATA 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5