BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493748

Length=803
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G32904.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  1112    0.0  


> AT3G32904.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G30520.1); 
Has 249 Blast hits to 117 proteins in 25 species: 
Archae - 0; Bacteria - 16; Metazoa - 73; Fungi - 5; Plants 
- 112; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). 
| chr3:13451438-13452807 REVERSE LENGTH=993
Length=993

 Score = 1112 bits (602),  Expect = 0.0
 Identities = 738/805 (92%), Gaps = 4/805 (0%)
 Strand=Plus/Plus

Query  1    ATGGGCAATTATCGTTTCAAATATCCTACACCCCTTGGTAGAGAATTTATCGTTGACAAG  60
            ||||| ||||| ||||||||| ||||||||   |||||||||||||||||| ||||||||
Sbjct  1    ATGGGAAATTACCGTTTCAAAGATCCTACAATTCTTGGTAGAGAATTTATCCTTGACAAG  60

Query  61   TTTAACAAGGAGTTTAATCTAAACGTAAATTATCGGTTCTTCAAAGAAAAACTTGATCAA  120
            |||||||||||||||||||| ||  |||||||||  ||| ||||||||||||||||||||
Sbjct  61   TTTAACAAGGAGTTTAATCTTAATATAAATTATCAATTCGTCAAAGAAAAACTTGATCAA  120

Query  121  CTAAAAAGAAAGTACAAGAAATACAAGCATCTTATGAAAGATTCCACGGGCATCTCGGTT  180
            |||||||||||||||||||| |||||| | ||||||||| | ||||||||||| ||||||
Sbjct  121  CTAAAAAGAAAGTACAAGAAGTACAAGGAGCTTATGAAAAACTCCACGGGCATTTCGGTT  180

Query  181  GATACTACTACATCTGTGATATCGGCATCTAACTCATGGTGGCAAGAGCGTGAACCTCAA  240
            |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct  181  GATACTACTACATCTGTGATATCAACATCTAACTCATGGTGGCAAGAGCGTGAACCTCAA  240

Query  241  TTCTCTGTGAACCAAAGAAGAGAACAGCTAAG-GAATGATTGTCTGGATAATGATGAAGG  299
            ||||||||||||||||||||||||||| |  | ||||||| || |||| |||||||||||
Sbjct  241  TTCTCTGTGAACCAAAGAAGAGAACAGTTG-GTGAATGATGGTTTGGACAATGATGAAGG  299

Query  300  TCATATATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCCTGAGACACA  359
            |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  300  TCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCTTGAGACACA  359

Query  360  AGAAAATGAAGAGATTCCTACATCCAGAACTCAACAACGAGGTGGAGTAAGGCGTGGAAG  419
            |||||| ||||||||||| || || |||| |||||||||||||||| |||||||||||||
Sbjct  360  AGAAAACGAAGAGATTCCCACGTCTAGAATTCAACAACGAGGTGGACTAAGGCGTGGAAG  419

Query  420  TAGTTCGCAAAGAGGTGCAGGAAACTCCCAAATTTCTACCAGGAGTGGTTCACGAGGAAG  479
            |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  420  TAGTTCGCAAAGAGGTGCAGGAAACTTCCAAATTTCTACCAGGATTGGTTCACGAGGAAG  479

Query  480  GCGTAGAAAACAATCATTTGAAACAACCCTAACAGATACAATAACTGGCTTCAGAGAGTT  539
             |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct  480  TCGTAGAAAACAATCATTTGAGACAACTCTAACAGATACAATAACTGGCTTAAGAGAGTT  539

Query  540  TCAGCGCCAAAAATTACAACAGTTGCGCCCGAATTTGTTTT-ACGAAGCTGATTACAGCG  598
            |||||||||||  ||||||||| |||||||||||| ||||| || ||| |||||||| | 
Sbjct  540  TCAGCGCCAAAGTTTACAACAGATGCGCCCGAATT-GTTTTGACAAAGATGATTACAACA  598

Query  599  AATTCGATATGGCTGTGAAGATATTTGAATCAATGGACCTTTCGAATGACACTGATTTTT  658
            |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct  599  AATTCGATATGGCTATGAAGTTATTTGAATCAATGAACCTTCCGAATGACACTGATTTTT  658

Query  659  ATTGGGCTTGCATGCATGCATTTAAGGAAGAAAGATTTTGGCGTAAGTACTTCATTGATA  718
            ||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||| |||
Sbjct  659  ATTGGGCTTGCATTCATGCATTTAAGGCAGAAATTTTTTGGCGTAAGTACTTCATTAATA  718

Query  719  GAGCTGAAAGAACCATCGAAGATAAGCTGAAATTTTTACAAGCTCTTACTGGATATACAC  778
            |||||||||||||| |||||||||| |||||||||||||||||||||||| || ||||||
Sbjct  719  GAGCTGAAAGAACCGTCGAAGATAATCTGAAATTTTTACAAGCTCTTACTAGAGATACAC  778

Query  779  GGGACAGTGAATATGTGGGAAAACG  803
            | || | ||||||||||||||||||
Sbjct  779  GAGATAATGAATATGTGGGAAAACG  803



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39082166366


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5