BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493749
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37710.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1995 0.0
> AT5G37710.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:14979159-14981400 FORWARD LENGTH=1311
Length=1311
Score = 1995 bits (1080), Expect = 0.0
Identities = 1235/1312 (94%), Gaps = 2/1312 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGTAGCTTGTGGACTAGAATGTGTCTTCTGCGTCGGATTCAGTCGATGGGCATGG 60
||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1 ATGTCAGTAGCTTGTGGACTAGAATGTGTCTTCTGTGTAGGATTCAGTAGATGGGCATGG 60
Query 61 AAACGATGCACACACGTAGGCTCCGACGATAGTGCCACGTGGACATCAGCAACACCTGAA 120
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 61 AAACGATGCACACACGTAGGCTCAGACGATAGCGCCACGTGGACATCAGCAACACCGGAA 120
Query 121 GAATTCGAACCAATCCCAAGAATCAGCCGTGTAATCCTCGCCGTCTACGAACCCGATCTA 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 GAATTCGAACCAATCCCAAGAATCAGCCGAGTAATCCTCGCCGTCTACGAACCCGATCTC 180
Query 181 AGAAACCCTAAAATCTCACCTTCATTAGGAACTTTCGATCTAAACCCTGACTGGGTCATC 240
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 181 AGAAACCCTAAAATCTCACCTTCGTTAGGAACTTTCGATCTAAACCCTGAATGGGTCATC 240
Query 241 AAACGTGTGACACACGAAAAAACCCTAGGAAGATCTCCACCGTACATAATCTACATAGAT 300
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 241 AAACGTGTGACACACGAAAAAACCCAAGGAAGATCTCCACCGTACATTATCTACATAGAT 300
Query 301 CACAACCACCGTGAGATTGTTTTAGCGATTCGTGGTTTGAACTTAGCTAAAGAGAGTGAT 360
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CACGACCACCGTGAGATTGTTTTAGCGATTCGTGGCTTGAACTTAGCTAAAGAGAGTGAT 360
Query 361 TACAAGATTCTTTTAGATAACAAATTAGGTCAGAAAATGCTTGGTGGTGGTT-TCGTGCA 419
||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 361 TACAAGATTCTGTTAGATAACAAATTAGGTCAGAAAATGCTTGGTGGTGGTTAT-GTGCA 419
Query 420 TCGTGGGTTATTGAAATCTGCTGCTTGGGTTTTGAATCAAGAATCTGAAACACTTAGGAG 479
||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| ||||
Sbjct 420 TCGTGGGTTGTTGAAATCTGCGGCTTGGGTTTTGAATCAAGAATCTGAGACTCTTTGGAG 479
Query 480 AGTTTGGGAAGAGAATGGTAAAGAGTATGATTTGGTTTTTGCTGGTCATTCTTTGGGTTC 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTTTGGGAAGAGAATGGTAGAGAGTATGATTTGGTTTTTGCTGGTCATTCTTTGGGTTC 539
Query 540 TGGTGTTGCTGCTTTGATGGCGGTTTTGGTTGTTAATAATCCGGAGATGATTGGTGGTAT 599
||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 540 TGGTGTTGCGGCGTTGATGGCGGTTTTGGTTGTTAATACTCCGGCGATGATTGGTGATAT 599
Query 600 TCCGAGGAGTAAGATTCGGTGTTTTGCTTTAGCTCCGGCGAGATGTATGTCGCTTAATCT 659
|||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 TCCGAGGAATAAGGTTCGATGTTTTGCTTTGGCTCCGGCGAGATGTATGTCGCTTAATCT 659
Query 660 CGCCGTTAAGTATGCTGACGTCATCTTCTCTGTTATTTTACAGGATGATTTTTTACCAAG 719
|||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||| ||
Sbjct 660 CGCCGTTAAGTATGCTGACGTCATCTCCTCCGTCATTTTGCAGGATGATTTTTTACCGAG 719
Query 720 AACGGCGACACCGTTGGAGGATATTTTCAAGTCCGTATTCTGTTTGCCTTGCTTGTTGTT 779
||| |||||||| || |||||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 720 AACAGCGACACCATTAGAGGATATATTCAAGTCTGTATTCTGCTTGCCGTGCTTGTTGTT 779
Query 780 TTTAGTTTGTTTGAGGGATACATTTATACCCGAAGGTCGGAAACTAAGAGATCCTAGAAG 839
| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 TCTAGTTTGTCTGAGGGATACATTTATACCGGAAGGTCGGAAACTAAGAGATCCTAGAAG 839
Query 840 ACTTTATGCTCCTGGTCGAATTTATCATATCGTTGAGCGAAAATTTTGCAGGTTTCCTCC 899
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 GCTTTATGCTCCTGGTCGAATTTATCATATCGTTGAGCGGAAATTTTGCAGGTTTCCTCC 899
Query 900 TGAAGTGAGAACGGCAATTCCCGTGGATGGTAGATTTGAACATATTGTATTATCATCGAA 959
||||||||||| || |||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 900 CGAAGTGAGAACCGCGATTCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAA 959
Query 960 TGCAACATCGGATCATGCGATTCTATGGATAGAAAGAGAAGCCGAAAAGGCATTGCAGAT 1019
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 TGCAACATCGGATCATGCGATTCTATGGATAGAAAGAGAAGCAGAAAAGGCATTGCAGAT 1019
Query 1020 ATTGAGAGAGAAGAGTTCAGAGACAGTGGTAACAATGCCACCAAAAGAAAAGAGAATGGA 1079
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1020 ATTGAGAGAGAAGAGTTCAGAGACAGTGGTAACAATGGCACCAAAAGAGAAGAGAATGGA 1079
Query 1080 GAGGTTAAACACTTTAGAGAAAGAGCACAAAGATGCGTTGGAGAGAGCGGTGAGTCTCAA 1139
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1080 GAGGTTAAGTACTTTAGAGAAAGAGCACAAAGATGCGTTGGAGAGAGCCGTGAGTCTTAA 1139
Query 1140 TATCCCACACGCATTGTCCACCGCTGAAGAAGAAGAAGAATGTAACAATGGAGAAGCATC 1199
||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1140 TATCCCACACGCAGTGTCCACCGCGGAAGAAGAAGAAGAATGCAACAATGGAGAAGCATC 1199
Query 1200 GGCAGAGTCAAAAACGAAGAAGAAGAATTGGGATGATGTGGTGGAAAAGCTTTTCCATCG 1259
|| |||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1200 CGCGGAGTTGAAAACAAAGAAGAAGAATTGGGATGAAGTTGTGGACAAGCTTTTCCATCG 1259
Query 1260 AAGCGATTCCGGAGAATTCGTTTTCAACGATAACTTTGTTCCTGAAAGGTAG 1311
|||| |||| |||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1260 AAGCAATTCAGGAGAATTCGTTCTCAACGATAACGTTGTTCCTGAAAGGTAG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5