BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493750
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981638-14... 1332 0.0
AT1G66260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 401 5e-111
> AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981638-14984606
REVERSE LENGTH=1215
Length=1215
Score = 1332 bits (721), Expect = 0.0
Identities = 896/974 (92%), Gaps = 38/974 (4%)
Strand=Plus/Plus
Query 8 CTCAATC-TC-TCCATCT-TCTCTCGTTCGGATTCTAC-TGTCTTCTTCTGTTTTCAGAT 63
||| ||| || || |||| ||||||||||||||||| | | |||||||||| ||||||||
Sbjct 82 CTCCATCTTCTTCAATCTCTCTCTCGTTCGGATTCT-CATCTCTTCTTCTGGTTTCAGAT 140
Query 64 TCAGTCTTGTTACTGTGTTTCATAAGACAATTGGAGTTAAGATGTCGGGTGCTTTGAATA 123
| |||||||||||||||||||||||||| |||| |||||||||||| || || |||||||
Sbjct 141 TGAGTCTTGTTACTGTGTTTCATAAGACTATTGAAGTTAAGATGTCTGGAGCATTGAATA 200
Query 124 TGACTCTTGATGAGATCGTTAAGAGGGGTAAGACTGCAAGGTCTGGGGGAAGAGGAAATT 183
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 201 TGACTCTTGATGAGATTGTTAAGAGGGGTAAAACTGCAAGGTCTGGGGGAAGAGG-GATT 259
Query 184 CTCGTCCTGGGCGTGGTCGTGGCCGTGGTGGTGGTGGAAGAGGAGCTGGACCTGCTCGAA 243
|| || ||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 260 -TC-TCGTGGGCGTGGTCGTGGACGTGGTGGTGGTGGAAGAGGAGCTGGACCTGCTAGAA 317
Query 244 GAGGTCCTCTTGCTGTGAATGCTCGCCCATCATCTTTCTCCATTAACAAGCCTGTCCGTA 303
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 318 GAGGTCCTCTTGCTGTGAATGCTCGTCCATCATCTTTCACCATTAACAAGCCTGTCCGTA 377
Query 304 GGGTCAGGAGCTTGCCATGGCAAAGTGGTTTGTTTGAAGATGGCTTAAGAGCTGCTGGGG 363
||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||
Sbjct 378 GGGTCAGGAGCTTGCCATGGCAAAGCGGTTTGTTTGAAGATGGCCTAAGAGCTGCCGGGG 437
Query 364 TATCAGGAGTTGAAGTTGGAACCAGACTCCATGTTACAAATCTGGACCAGGGTGTGACAA 423
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 438 CATCAGGAGTTGAAGTTGGAACCAGGCTCCATGTTACAAATCTGGACCAGGGTGTGACAA 497
Query 424 ATGAAGATATAAGGGAACTCTTCTCTGAGATTGGGGAGGTAGAGCGTTATGCGATTCATT 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ATGAAGATATAAGGGAACTCTTCTCTGAGATTGGGGAGGTAGAGCGTTATGCGATTCATT 557
Query 484 ATGACAAAAATGGGCGTCCAAGTGGCACAGCTGAAGTGGTGTATCCAAGAAGAAGTGATG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 ATGACAAAAATGGGCGTCCAAGTGGCACAGCTGAAGTGGTGTATCCAAGAAGAAGTGATG 617
Query 544 CATTTCAAGCTCTGAAGAAATATAACAATGTATTATTGGATGGAAGGCCAATGAGACTTG 603
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 618 CATTTCAAGCTCTGAAGAAATATAACAATGTGCTATTGGATGGAAGGCCAATGAGACTTG 677
Query 604 AGATTTTGGGTGGCAACAATTC--C-GAGGCTCCTTTATCTGGTCGTGTGAATGTGAATG 660
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 678 AGATTTTGGGTGGCAACAATTCTTCCGAGGCTCCTTTATCTGGTCGTGTGAATGTGAATG 737
Query 661 TCACTGGTCTCAACGGAAGGCTGAAGAGGACTGTTGTTATCCAA---GTT--AG-AGG-A 713
||||||| ||||| ||||||||||||||||| |||||||||||| | || ||| |
Sbjct 738 TCACTGGACTCAATGGAAGGCTGAAGAGGACGGTTGTTATCCAACAAGGAGGAGGAGGGA 797
Query 714 G-GGA-GAG---GAGG----A-AG-AGG------TCCAGCTCCTACTATCAGTCGTCGCC 756
| ||| ||| |||| | || ||| ||||||||||||| ||||||| ||||
Sbjct 798 GAGGAAGAGTTAGAGGTGGGAGAGGAGGAAGAGGTCCAGCTCCTACTGTCAGTCGCCGCC 857
Query 757 TTCCAATTCATAACCAGCAGGGAGG-G--ATGAGAGGGGGAAGAGGCGGGTTTCGTGGTA 813
||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| ||
Sbjct 858 TTCCAATTCATAACCAGCAGGGAGGAGGGATGAGAGGAGGAAGAGGCGGGTTTCGTGCTA 917
Query 814 GAGGGCGTGGTGGTGGCGGCCGTGGTCGTGGTGGTGGAAGAGGAAATGGAAAGAAGCCAG 873
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GAGGGCGTGGTAATGGTGGCCGTGGTCGTGGTGGTGGAAGAGGAAATGGAAAGAAGCCAG 977
Query 874 TGGAAAAGTCAGCTGCTGATCTTGACAAGGATCTTGAGAGCTATCACGCTGATGCTATGA 933
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 978 TGGAGAAGTCAGCTGCTGATCTTGACAAAGATCTTGAGAGCTATCACGCTGATGCCATGA 1037
Query 934 ACACCTCTTAAATC 947
||||||||||||||
Sbjct 1038 ACACCTCTTAAATC 1051
> AT1G66260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:24695640-24698434 REVERSE LENGTH=1310
Length=1310
Score = 401 bits (217), Expect = 5e-111
Identities = 595/769 (77%), Gaps = 60/769 (8%)
Strand=Plus/Plus
Query 216 GGTGGAAGAGGAGCTGGACCTGCTCGAAGAGGTCCTCTTGCTGTGAATGCTC-GCC--CA 272
||||||||||||| |||||||| ||| ||||||||||||||||| ||| ||| ||| ||
Sbjct 309 GGTGGAAGAGGAGGTGGACCTGTTCGTAGAGGTCCTCTTGCTGTTAATACTCGGCCATCA 368
Query 273 TCATCTTTCTCCATTAACAAGCCTGTCCGTAGGGTCAGGAGCTTGCCATGGC--AA--AG 328
||||| |||||||| ||||||| || ||| ||| |||||||||||||||| || ||
Sbjct 369 TCATCCTTCTCCATAAACAAGCTTGCCCGCAGGAAGAGGAGCTTGCCATGGCAGAATCAG 428
Query 329 --TGGTTTGTTTGAAG-ATGGCTTAAGAGCTGCTGGGGTATCAGGAGTTGAAGTTGGAAC 385
|| ||||| ||||| | ||| ||||||| ||||||||||||||| ||||| |||||
Sbjct 429 AATGATTTGTATGAAGAAACCCTT-AGAGCTGTTGGGGTATCAGGAGTGGAAGTCGGAAC 487
Query 386 CAGACTCCATGTTACAAATCTGGACCAGGGTGTGACAAATGAAGATATAAGGGAACTCT- 444
|| | | || |||| || || || ||||| ||||||||||||||||||||||||||||
Sbjct 488 CACAGTTTATATTACCAACCTTGATCAGGGAGTGACAAATGAAGATATAAGGGAACTCTA 547
Query 445 TCTCTGAGATTGGGGAGGT-AGAGCGTTATGCGATTCATTATGACAAAAATGGGCGTCCA 503
| |||| ||||| ||| | | | | ||||| ||||| |||||||||||||||||||||
Sbjct 548 TG-CTGAAATTGGAGAGCTGAAAA-GATATGCAATTCACTATGACAAAAATGGGCGTCCA 605
Query 504 AGTGGCA-CAGCTGAAGTGGTGTATCCAAGAAGAAGTGATGCATTTCAAGCTCTGAAGAA 562
||||| | | |||||||| |||||| ||||||||||||||| |||||||| ||| |||
Sbjct 606 AGTGG-ATCGGCTGAAGTTGTGTATATGAGAAGAAGTGATGCAATTCAAGCTATGAGGAA 664
Query 563 ATATAACAATGTA-TTATTGGATGGAAGGCCAATGAGACTTGAGATTTTGGGTGGCAACA 621
||| || |||||| || |||||||||||||| |||| ||| |||||| ||||||| || |
Sbjct 665 ATACAATAATGTACTT-TTGGATGGAAGGCCTATGAAACTGGAGATTCTGGGTGG-AA-A 721
Query 622 ATTCCGAG---GCTCCTTTATCTGGTCGTGTGAATGTGAATGTCACTGGTCTCAACGGAA 678
| | || |||||| | | | |||||| ||||||| || | || || ||||
Sbjct 722 -TACTGAATCTGCTCCTGTCGCAGCTCGTGTTAATGTGACTGG-ATTG-----AATGGAA 774
Query 679 GGCTGAAGAGGACTGTTGTT-ATC---CAAG---TTAGAGGAGGGAGAG--G-A-G-G-A 725
|| ||||||||| ||| || || |||| ||||||| ||||||| | | | | |
Sbjct 775 GGATGAAGAGGAGTGTC-TTCATTGGACAAGGAGTTAGAGGTGGGAGAGTAGGAAGAGGA 833
Query 726 AGAGGTCCAGCTCCTACTATCAGTCGTCG-CCT-TCCAATTCATAACCAGCAGGGAGG-G 782
|||||| ||| |||| || || || | || ||||| || ||||| || || || |
Sbjct 834 AGAGGTTCAGGTCCTTCTGGGAGACGCCTTCCACTCCAA--CAAAACCAACAAGGTGGTG 891
Query 783 ATGAGAGGGGGAAGAGGCGGGTTTCGTGGTAGAGGGCGTGGT---GGTGGCGGCCGTGGT 839
||| || || |||||||||| ||||||||||| || ||| ||||| ||| | ||
Sbjct 892 -TGACAGCTGGTCGAGGCGGGTTCCGTGGTAGAGGCCGGGGTAATGGTGGTGGCAGAGGG 950
Query 840 CGTG---GTGGTGGAAGAGGAAATGGAAAGAAGCCAGTGGAAAAGTCAGCTGCTGATCTT 896
| | ||||| |||| |||||||||||||||||| ||||| ||||| |||||
Sbjct 951 AATAAAAGCGGTGGGCGAGG---TGGAAAGAAGCCAGTGGAGAAGTCTGCTGCGGATCTC 1007
Query 897 GACAAGGATCTTGAGAGCTATCACGCTGATGCTATGAACACCTCTTAAA 945
||||| ||||| || |||||||| ||||| |||||||||| ||||||||
Sbjct 1008 GACAAAGATCTCGAAAGCTATCATGCTGAAGCTATGAACATCTCTTAAA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5