BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493755
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37770.1 | Symbols: TCH2, CML24 | EF hand calcium-binding pr... 793 0.0
> AT5G37770.1 | Symbols: TCH2, CML24 | EF hand calcium-binding
protein family | chr5:14998854-14999619 REVERSE LENGTH=766
Length=766
Score = 793 bits (429), Expect = 0.0
Identities = 512/549 (93%), Gaps = 17/549 (3%)
Strand=Plus/Plus
Query 1 ACACAACTCTAACCGttttttttC-TCAATCTC---TCTC-AAATCTCAAAACTCTTCAA 55
|||| ||||||||||||||||||| || |||| |||| ||||||| || |||||||
Sbjct 1 ACACTACTCTAACCGTTTTTTTTCTTC--TCTCAAATCTCAAAATCTC-AATTTCTTCAA 57
Query 56 CAATGTCATCGAAGAACGGAGTTGTTCGTAGCTGTTTAGGATCAATGGACGACATCAAAA 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CAATGTCATCGAAGAACGGAGTTGTTCGTAGCTGTTTAGGATCAATGGACGACATCAAAA 117
Query 116 AAGTCTTCCAACGATTCGACAAAAACGGCGACGGAAAAATCTCCGTCGACGAGCTAAAAG 175
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 118 AAGTCTTCCAACGATTCGACAAAAACGGCGACGGGAAAATCTCCGTCGACGAGCTCAAAG 177
Query 176 AAGTGATTCGCGCTCTTTCACCAACAGCATCACCGGAAGAAACAGTAACGATGATGAAAC 235
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 AAGTGATCCGCGCTCTCTCACCAACAGCATCACCAGAAGAAACAGTAACGATGATGAAAC 237
Query 236 AATTTGATCTCGACGGTAATGGATTCATAGATCTGGACGAATTCGTTGCTCTTTTTCAAA 295
|||| ||||| |||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 238 AATTCGATCTAGACGGTAACGGATTCATAGATCTGGACGAATTCGTCGCGCTTTTCCAAA 297
Query 296 TCGGAATCGGTGGAGGAGGTAATAATCGAA--G-CG-A-----TTTGAAAGAAGCGTTTG 346
|||||||||| ||||||||||| ||||||| | || | |||||||||||||||||
Sbjct 298 TCGGAATCGGAGGAGGAGGTAACAATCGAAACGACGTAAGCGATTTGAAAGAAGCGTTTG 357
Query 347 AGTTATATGATTTGGATGGTAATGGAAGAATCTCGGCGAAAGAGCTTCATTCAGTGATGA 406
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 AGTTATATGATTTGGATGGTAATGGAAGGATCTCGGCGAAAGAGCTTCATTCAGTGATGA 417
Query 407 AGAATTTGGGTGAGAAGTGTTCTGTGCAAGATTGTAAGAAGATGATTAGTAAAGTTGATG 466
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGAATTTGGGTGAGAAGTGCTCTGTGCAAGATTGTAAGAAGATGATTAGTAAAGTTGATA 477
Query 467 TTGATGGTGATGGTTGTGTTAATTTTGATGAGTTTAAGAAGATGATGAGTAATGGTGGTG 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTGATGGTGATGGTTGTGTTAATTTTGATGAGTTTAAGAAGATGATGAGTAATGGTGGTG 537
Query 527 GTGCATGAG 535
|||| ||||
Sbjct 538 GTGCTTGAG 546
Score = 159 bits (86), Expect = 2e-38
Identities = 136/158 (86%), Gaps = 12/158 (8%)
Strand=Plus/Plus
Query 536 TTTAGTGACGGCGATTAAAAACCCTAGAAGTTTGTGGTGATTGATGATTATTGATTTTAA 595
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 611 TTTAGTGACGGCGATTAAAAACCCTAGAAGTATGTGGTGATTGATGAATATTGATTTTAA 670
Query 596 CTATATGAGGTTGTTTCTATCT-TT-TGCTCTTTTTTATAATTACTAAGCTTT-TGGAGT 652
| | | |||||||||| | || |||||||||| ||||||| || ||||| | ||||
Sbjct 671 C-----G-G-TTGTTTCTATATCTTCTGCTCTTTTT-ATAATTAATATGCTTTGTTGAGT 722
Query 653 ATTATTTACTCTTTAATGTACTGAATTAATTACTGATT 690
||||| | |||||||| | ||||||||||||||||||
Sbjct 723 GTTATT-AGTCTTTAATATTCTGAATTAATTACTGATT 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5