BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493757
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37790.1 | Symbols: | Protein kinase superfamily protein | ... 2909 0.0
> AT5G37790.1 | Symbols: | Protein kinase superfamily protein
| chr5:15008172-15011152 REVERSE LENGTH=2047
Length=2047
Score = 2909 bits (1575), Expect = 0.0
Identities = 1898/2044 (93%), Gaps = 62/2044 (3%)
Strand=Plus/Plus
Query 1 AAAAATAAATATAT-TCTCTCTTTCTCTTCCATCAAGCAAAGCTCTTCAAAAAGAATCAA 59
||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 15 AAAAATAAATACATAT-TCTCTTTCTCTTCCATCAAGCAAAGCTTTTCAAAAAGAATCAA 73
Query 60 AC-TTTC-AAGTCTTTTTGTTTTCTCGAGATCTGTTC--ACAGAGAGAGATAAAGAATGG 115
|| |||| || |||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 74 ACTTTTCGAA-TCTTTTTG-CTTCTCGAGATCTGTTCATAGAGAGAGAGATAAAGAATGG 131
Query 116 GTTTTTATGAAGGAGCCTCTGTTCATCCAAAAAAC-CCAGAAAACACAAACTCAGTGAAT 174
|||||||||||||||||||||||||||| || ||| |||||||||| |||| ||||||||
Sbjct 132 GTTTTTATGAAGGAGCCTCTGTTCATCC-AAGAACTCCAGAAAACAAAAACACAGTGAAT 190
Query 175 ATTCCGATTCTCACTTCTTCATCATCATCACCAGATCTTGACGGAGATAACGATG---AC 231
|||||||| ||||||||||| || |||||| |||||||||||||||||||| ||| ||
Sbjct 191 ATTCCGATACTCACTTCTTCTTCTTCATCATCAGATCTTGACGGAGATAACAATGACAAC 250
Query 232 AACAAC-A-A-AGGAATCAAAACCCTTTTGaaaaaaaTGATTTTTGATTTGGGTTTCGCT 288
|||||| | | ||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 251 AACAACAATACAGGAATCAAAACCCTTTTGAAAAGAATGATCTTTGATTTGGGTTTCGCT 310
Query 289 TGTTTTCTTCCTCCTTT-AGCT-----GAAAACTCCGGCAACAACAAT---GGAGG---- 335
||||| ||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct 311 TGTTTCCTTCCTCCTTTAAGCTCAACCGAAAACTCCGGCAACAACAATGGAGGAGGAACA 370
Query 336 TGC--CGGC---GGAGGA--A-GCGGCGGAGGAGAGAATAACAAAGCTTGGCTATTGGCG 387
|| |||| |||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 371 AGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGAGAATAACAAAGCTTGGCTATTGGCG 430
Query 388 GAAACAGCACCGGAGAATATGAATCCTGATCCTCATTCAGTTCATTCATCGTTTAGATTC 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GAAACAGCACCGGAGAATATGAATCCTGATCCTCATTCAGTTCATTCATCGTTTAGATTC 490
Query 448 AGTCTTTGTTCACAGATTGAGCTTGAGAAAATGAAAGGTGAAGAACCGTCCTTGTCTGCT 507
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AGTCTTTGTTCACAAATCGAGCTTGAGAAAATGAAAGGTGAAGAACCGTCCTTGTCTGCT 550
Query 508 TCGTCTTCTTGTCGGAATTTGTCGGTTTCTGGTGGTTCCACGACGGTTTTGATGGTGAAT 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 551 TCGTCTTCTTGTCGGAATTTGTCGGTTTCTGGTGGTTCCACGACGGTTTTGATGGTTAAT 610
Query 568 TTGGAGAATGGTGTTAAGGAG---AC------T---ACTGATGATTTGCGGTGGACGAGA 615
||||||||||||||||||||| || | |||||||||||||||||||| |||
Sbjct 611 TTGGAGAATGGTGTTAAGGAGACTACTGGGAATGCGACTGATGATTTGCGGTGGACTAGA 670
Query 616 GCTAGGTCGCTTGAGAAGAGTATTTCTCCGGTGGCTAATACTTTGGTTCGGTTTAGCTAC 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GCTAGGTCGCTTGAGAAGAGTATTTCTCCGGTGGCTAATACTTTGGTTCGGTTTAGCTAC 730
Query 676 GGTGAAATTGTGGCAGCTACTCGTAATTTCTCTAAAGGGAGAGTGTTGGGAAGAGGAGCT 735
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GGTGAGATTGTGGCAGCTACTCGTAATTTCTCTAAAGGGAGAGTGTTGGGAAGAGGAGCT 790
Query 736 TGTAGTTATGTGTTTAGAGGCAAAATCGGAATGTGGCGAACCGCTTTGGCGATCAAGAGA 795
||||| |||||||||||||||||||||||||||||| |||| ||||| || |||||||||
Sbjct 791 TGTAGCTATGTGTTTAGAGGCAAAATCGGAATGTGGAGAACGGCTTTAGCAATCAAGAGA 850
Query 796 CTTGATAAGGAAGACAAAGAATCTCCAAAATCTTTTTGTAGAGAGTTGATGATTGCAAGC 855
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 851 CTTGATAAGGAAGACAAAGAATCTCCTAAATCTTTTTGTAGAGAGTTGATGATTGCAAGC 910
Query 856 TCTCTTCATAGTTTCAACATTGTGCCTCTTCTTGGCTTTTGTATTGATCCTGAAGAAGGT 915
||||||||||| | ||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 911 TCTCTTCATAGCTCCAACATTGTACCTCTTCTTGGATTCTGTATTGATCCTGAAGAAGGG 970
Query 916 TTATTCTTGGTTTACAAGTATGTCTCTGGTGGTAGTCTCGAACATTATTTACACGATAAG 975
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 971 TTATTCTTGGTTTACAAGTATGTCTCTGGTGGTAGCCTCGAACATTATTTACACGATAAG 1030
Query 976 AAGAAGAAGAAAGGTGTGAAAGCAGCTTTTGGTTTACCTTGGTCAGCAAGGTACAAGGTA 1035
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1031 AAGAAGAAGAAAGGCGTAAAAGCCGCTTTTGGTTTGCCTTGGTCAGCAAGGTACAAGGTA 1090
Query 1036 GCGTTAGGTATCGCAGATGCCATCGCCTATTTGCATAATGGAACAGAGCAATGTGTTGTT 1095
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1091 GCGTTAGGTATAGCAGATGCCATAGCTTATTTGCATAATGGAACAGAGCAATGTGTTGTT 1150
Query 1096 CACAGAGATATCAAACCCTCCAATATTCTTCTTTCCTCAAAGAAAATACCAAAGTTGTGT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CACAGAGATATCAAACCCTCCAATATTCTTCTTTCCTCAAAGAAAATACCAAAGTTGTGT 1210
Query 1156 GATTTTGGGTTAGCTACTTGGACCGCTGCGCCTTCTATTCCTTTCCTCTGCAAGACCGTG 1215
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1211 GATTTTGGGTTAGCTACTTGGACCGCTGCACCTTCGGTTCCTTTCCTCTGCAAGACCGTG 1270
Query 1216 AAAGGCACATTCGGCTATCTGGCTCCAGAGTATTTCCAGCATGGTAAAATATCTGACAAG 1275
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1271 AAAGGCACATTCGGCTATCTGGCTCCTGAGTATTTCCAGCATGGTAAGATATCTGACAAG 1330
Query 1276 ACTGATGTTTACGCCTTTGGGGTTGTGTTGCTTGAGCTAATAACTGGCCGGAAACCAATC 1335
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 ACCGATGTTTACGCCTTCGGGGTTGTGTTGCTTGAGCTAATAACTGGCCGGAAACCAATC 1390
Query 1336 GAAGCAAGAAGAGCATCTGGTCAAGAAAATTTGGTTGTTTGGGCGAAACCGTTGTTGCAT 1395
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1391 GAAGCAAGAAGAGCATCTGGTCAAGAAAATCTGGTTGTTTGGGCGAAACCGTTGTTGGAT 1450
Query 1396 AGAGGGATGGAAGCTATAGTGGAGCTGCTCGATCCGAGGCTCAAATGCACAAGAAAAAAC 1455
|||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1451 AGAGGGATAGAAGCTATAGTGGAGCTGCTTGATCCAAGGCTAAAATGCACAAGAAAAAAC 1510
Query 1456 TCGGTTCAAATGGAACGTATGATCCGCGCTGCAGCGGCATGTGTGATCAATGAGGAGTCC 1515
|||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1511 TCGGTTCAAATGGAGCGGATGATCCGTGCTGCAGCGGCGTGTGTGATCAATGAGGAGTCC 1570
Query 1516 CGAAGACCCGGTATGGAAGAGATTGTCTCAATCTTGAAAGGCGAAGAAGGTTTAGAGCCA 1575
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1571 CGAAGACCCGGTATGGAAGAGATTGTCTCAATCTTGAAAGGCGAAGAAGGTGTAGAGCCA 1630
Query 1576 AAAACACACTCAAGCAGGAAAAATACAAATACTTCGAGTATGATCGACTCGTATACACAA 1635
||||||| ||||||||||||| |||||||| |||| ||||||| ||||| |||||||||
Sbjct 1631 GAAACACATTCAAGCAGGAAAACTACAAATATTTCGGGTATGATTGACTCTTATACACAA 1690
Query 1636 TTGCAACAAACCAAATCCGAGATGAAATGTCATCTTGATCTTGCGATGCTCGGGGTAACC 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1691 TTGCAACAAACCAAATCCGAGATGAAATGTCATCTTGATCTTGCGATGCTCGGAGTAACC 1750
Query 1696 GAGTTTGAAGACGATGATCATGTGTACGGCCGATAAAAGATCCCAATAAATGGATTAAAA 1755
||||||||||| ||||||||||||||||||||||||||||| | || ||||||||| |||
Sbjct 1751 GAGTTTGAAGATGATGATCATGTGTACGGCCGATAAAAGATTCTAAGAAATGGATTTAAA 1810
Query 1756 AGTGTGTAAATAGGTATTTATGAAAAGTTTGAAACAGAGTTCTTAGTTTCTGAATCAGTG 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1811 AGTGTGTAAATAGGTATTTATGAAAAGTTTGAAACAGAGTTCTTAGTTTCTGAATTAGTG 1870
Query 1816 TTTGGTTGGTGTGTGTACATTGGTTTCGGtttttttttttGTTTATTCCACTATGGAGAA 1875
|| | | ||||||||||||||||||| |||||||||||| || | | ||| |||||||
Sbjct 1871 ATT--T-GCTGTGTGTACATTGGTTTCG-TTTTTTTTTTTGGTT-T-CTACTTTGGAGAA 1924
Query 1876 AACCGGTTTAGGTTTTTATATTTCCGGTTTGGTTATGGAGACAAAGCCGACTCTCCGGtt 1935
|||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1925 AACCGGTTTAGGTTTTGAT-TTTCCGGTTTGGTTATGGAGACA--GCCGATTCTCCGGTT 1981
Query 1936 tcgttttccgttttcaatatttttgggctttttt----GAGAAATCCATTAAAAAGAGGG 1991
|||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1982 TCGTTTTCAGTTTTCAATATTTTTGGGCTTTTTTTTTTGAGAAATCCATTAAAATGAGGG 2041
Query 1992 TTGG 1995
||||
Sbjct 2042 TTGG 2045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5