BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493759
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:150... 1229 0.0
AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:24795... 433 2e-120
> AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:15036197-15037574
FORWARD LENGTH=924
Length=924
Score = 1229 bits (665), Expect = 0.0
Identities = 831/910 (91%), Gaps = 15/910 (2%)
Strand=Plus/Plus
Query 1 ATGTCACTCATTAACGATCATTGCAATGAGCCTAATTACATCTCAAACCCAACTTCTTCA 60
||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 1 ATGTCACTCATTAACGAACATTGCAATGAGCGTAATTACATCTCAACCCCAAATTCTTCA 60
Query 61 GAAGACCTCTCTTCACC-CGAGAATTTTGGATTAGAGGGAA-GAGCTTCAGCTTCAAGCA 118
||||| ||||||||||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct 61 GAAGATCTCTCTTCACCAC-AGAATTGCGGATTAGA-CGAAGGAGCTTCAGCTTCAAGCA 118
Query 119 GTAGCACCATGAATTCTGATCATCAACAGAATCAAGGGTGTGTGTTTTACCCTTCCGGGG 178
|||||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 119 GTAGCACCATAAATTCTGATCATCAAAATAATCAAGGGTTTGTGTTTTACCCTTCCGGGG 178
Query 179 AAAGCATTGAGGATCATAATTCTTTGATGGATTTCAACGCTTCATCATTCTTTAGCTTTG 238
||| |||||| |||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 179 AAACCATTGAAGATCATAATTCTTTGATGGATTTCAATGCTTCATCATTCTTCACCTTTG 238
Query 239 ATTATCACCGAAGCTTTATCTCTCCTGTGACAAACGGTGGTGCCTTCTCGGTCTTGGA-G 297
|| ||||||||||| |||||||||| ||||| ||||||||||||||| ||||| |||| |
Sbjct 239 ATAATCACCGAAGCCTTATCTCTCCCGTGACCAACGGTGGTGCCTTCCCGGTCGTGGACG 298
Query 298 GAGAACATGAGTTACGGCTACACA-GGCTGGAGTCATCATC-AGATGGATAGTATTAGCC 355
| ||||||||||||| |||| | |||||||||||||||| || |||||||||||||||
Sbjct 299 G-GAACATGAGTTACAGCTA-TGATGGCTGGAGTCATCATCAAG-TGGATAGTATTAGCC 355
Query 356 CTAGAGTCATCAAAACCT-CAAATAGCTTTGAAACAACGAGCAGTTTTGAATTGACTTCA 414
||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 356 CTAGAGTCATCAAAA-CTCCAAATAGCTTTGAAACAACGAGCAGTTTTGGATTGACTTCA 414
Query 415 AATTCCA-GATGTAAACCGGCGACAAACCATGGAAATGGAGACTGGTTATATTCAGATTC 473
|| |||| || |||||||||| ||||||||||||||||||||||||||||| || | |||
Sbjct 415 AACTCCATGA-GTAAACCGGCCACAAACCATGGAAATGGAGACTGGTTATACTCTGGTTC 473
Query 474 AACCATTGTAAACACCGGTTTAAGGCACGAGTCTGCGTCCCCTAAACTGGCTGGAAATAA 533
||| |||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 474 AACTATTGTAAACATCGGTTCAAGGCACGAGTCCACGTCCCCTAAACTGGCTGGCAATAA 533
Query 534 ACGTCCTTTCACGGGAGATAACACTCACCTTTCGAAGAAGCCAAGTAGTGGTACCAATGG 593
||| |||||||||||||| ||||| || ||||| |||||||| ||||| ||||| |||||
Sbjct 534 ACGGCCTTTCACGGGAGAGAACACACAACTTTCAAAGAAGCCGAGTAGCGGTACGAATGG 593
Query 594 AGAGGCCAAACCTAAGGCAACAACTTCACCTAAAGATCCACAAAGCCTAGCAGCTAAGAA 653
| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 AAAGATCAAGCCTAAGGCAACAACTTCACCTAAAGATCCACAAAGCCTAGCAGCCAAGAA 653
Query 654 CCGAAGAGAAAGGATAAGCGAGCGCCTCAAAGTATTGCAAGAACTTGTACCCAATGGCAC 713
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||
Sbjct 654 CCGAAGAGAAAGGATAAGCGAACGCCTCAAGGTATTGCAAGAACTTGTACCGAATGGTAC 713
Query 714 CAAGGTGGATTTGGTGACTATGCTTGAGAAAGCAATTGGCTATGTCAAGTTTCTTCAAGT 773
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 714 CAAGGTGGATTTGGTAACTATGCTTGAGAAAGCAATTGGCTATGTAAAGTTTCTTCAAGT 773
Query 774 ACAAGTTAAGGTACTTGCGGCCGATGAGTTTTGGCCGGCGCAAGGAGGAAAAGCTCCGGA 833
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 774 ACAAGTTAAGGTACTTGCAGCCGATGAGTTTTGGCCGGCACAAGGAGGGAAAGCTCCGGA 833
Query 834 CATTTCTCAAGTTAAAGAAGCCATTGACGCAATCCTCTCATCAACGCAAAGAGATAGTAA 893
||||||||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||
Sbjct 834 CATTTCTCAAGTTAAAGAAGCTATTGACGCAATCCTCTCATCATCACAACGAGATAGTAA 893
Query 894 CTCAAACTAG 903
||||| ||||
Sbjct 894 CTCAA-CTAG 902
> AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:24795214-24796988
FORWARD LENGTH=1399
Length=1399
Score = 433 bits (234), Expect = 2e-120
Identities = 375/442 (85%), Gaps = 14/442 (3%)
Strand=Plus/Plus
Query 453 AGACTGGTTATATTCAGATTCAACCATTGTAAACACCGGTT-TAAGGCACGAGTCTGC-G 510
||||||||||||||| |||||||| |||||| ||| |||| | || |||||||| |
Sbjct 547 AGACTGGTTATATTCTGATTCAACTGTTGTAACCACTGGTTCT-AGAAACGAGTCT-CTT 604
Query 511 TCCCCTAAACT-GGCTGGAAATAAACGTCCTTTCACGGGAGATAACACTC-ACCTTTCGA 568
|| |||||| | |||||||| |||||| || ||||||||| | ||||| ||| ||||
Sbjct 605 TCGCCTAAA-TCCGCTGGAAACAAACGTTCTCACACGGGAGAGAGCACTCAACC-GTCGA 662
Query 569 AGAAGCCAAGTAGTGGTACCAATGGAGAGGCCAAACCTAAGGCAACAACTTCACCTAAAG 628
|||| | ||||| ||| | ||| || |||| |||||| ||||||||||||||||||
Sbjct 663 AGAAACTGAGTAGCGGTGTGACCGGAAAGACCAAGCCTAAGCCAACAACTTCACCTAAAG 722
Query 629 ATCCACAAAGCCTAGCAGCTAAGAACCGAAGAGAAAGGATAAGCGAGCGCCTCAA-AGTA 687
||||||||||||||||||| ||||| ||||||||||||||||| || || ||||| | ||
Sbjct 723 ATCCACAAAGCCTAGCAGCCAAGAATCGAAGAGAAAGGATAAGTGAACGTCTCAAGA-TA 781
Query 688 TTGCAAGAACTTGTACCCAATGGCACCAAGGTGGATTTGGTGACTATGCTTGAGAAAG-C 746
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||| |
Sbjct 782 TTGCAAGAACTTGTTCCCAATGGCACCAAGGTTGATTTGGTGACAATGCTTGA-AAAGGC 840
Query 747 AATTGGCTATGTCAAGTTTCTTCAAGTACAAGTTAAGGTACTT-GCGGCCGATGAGTTTT 805
||| | ||||||||||| ||||||||||||||||||||| || ||| ||||||||||||
Sbjct 841 TATTAGTTATGTCAAGTTCCTTCAAGTACAAGTTAAGGTA-TTAGCGACCGATGAGTTTT 899
Query 806 GGCCGGCGCAAGGAGGAAAAGCTCCGGACATTTCTCAAGTTAAAGAAGCCATTGACGCAA 865
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 900 GGCCGGCTCAAGGAGGAAAAGCTCCTGACATTTCTCAAGTTAAAGACGCCATTGATGCCA 959
Query 866 TCCTCTCATCAACGCAAAGAGA 887
| ||||| ||| | ||| ||||
Sbjct 960 TTCTCTCCTCATCACAACGAGA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5