BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493762 Length=827 Score E Sequences producing significant alignments: (Bits) Value AT5G37840.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 922 0.0 > AT5G37840.1 | Symbols: | BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:15062008-15063402 REVERSE LENGTH=904 Length=904 Score = 922 bits (499), Expect = 0.0 Identities = 706/800 (88%), Gaps = 37/800 (5%) Strand=Plus/Plus Query 1 ACCAAATCCTTCTCAACATATAAATAGAAAGCGTTGCATACTTTATGAGATATA-T---- 55 |||||||||| ||||||||||||||||| |||||||||| |||||||||||||| | Sbjct 1 ACCAAATCCTCCTCAACATATAAATAGATAGCGTTGCATGCTTTATGAGATATATTCAAC 60 Query 56 ------------AAAATGGGAAACACTAT-A-----AGGAGAAACAAGGCGAAAGTTATG 97 |||||||| |||||||| | ||||||||||||| |||||||||| Sbjct 61 AAAAAAGACAGAAAAATGGGGAACACTATAATGGTGAGGAGAAACAAGGTGAAAGTTATG 120 Query 98 AAGATCGACGGTGATATTTTCCGGCTCAAAACTCCGGTGACGGCGAGTGACGCCACGAAA 157 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAGATCGACGGCGATATTTTCCGGCTCAAAACTCCGGTGACGGCGAGTGACGCCACGAAA 180 Query 158 GAGTATCCCGGATTTGTGCTGTTAGACTCCGAGACCGTGAAACGGTTAGGAGTTCATGCC 217 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 181 GAGTATCCCGGATTCGTGCTGTTAGACTCCGAGACCGTGAAACGATTAGGAGTTCGCGCC 240 Query 218 AAACCGCTAGAGCCGAATCAGA-ACTTAAAGCCGAA-CAAAACTTATTTTTTGGTGGACC 275 ||||| |||||||||||||| | | |||||||| || || | | |||||||||||||||| Sbjct 241 AAACCTCTAGAGCCGAATCAAATA-TTAAAGCCTAATCACA-CATATTTTTTGGTGGACC 298 Query 276 TTCCGCCAGTAGATAAAAAGAATAAGCTTCCATACCGGAGAGTTATGTCCGGTAATATAC 335 |||| || |||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TTCCACCGGTAGATAAGAGGAATAAGCTTCCATACCGGAGAGTTATGTCCGGTAATATAC 358 Query 336 ATATTGGCGCCAAGGAGCGTTTGGAGATGTTAATGCTTTCCCGGAGAACGGTTTCCGATG 395 || ||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||| Sbjct 359 ATGTTGGCGCAAAGGAGCGTTTAGAGATGTTAATGCTTTCAAGGAGAACGGTTTCTGATG 418 Query 396 TTGGTGCCGCAAGATCT-ACCG-A--AGCAGATGGGCCTGAGCTTGGACAAAGGAGGGTG 451 ||||||| ||||||||| || | | || ||||||||||||||||||||| | ||||||| Sbjct 419 TTGGTGCAGCAAGATCTGAC-GTAGTAGGAGATGGGCCTGAGCTTGGACATACGAGGGTG 477 Query 452 AGATTAAGGCTGCCTAGGTCTCAGATCACAAAGTTAATGGGAGAGAGCCATGATGCTTCG 511 || ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 478 AGGTTAAGGCTGCCTAGGTCTCAGATAACAAAGTTAATGGAAGAGAGCCATGATGCTTCG 537 Query 512 GAAGTTGCGGCGA-GAATTATCAATGCTTATATGGAGAGTTCCGGTGAGATGCAAGGCGG 570 ||||| || |||| || |||||| ||||||||||||||||||||||| ||| |||||||| Sbjct 538 GAAGTGGCAGCGAAGA-TTATCAGTGCTTATATGGAGAGTTCCGGTGGGATACAAGGCGG 596 Query 571 CAAAGATAACGATGGTCTTCACCGGAAACTTGGAATTGCGGAGATAAACAGCCATTACAA 630 | ||||||||||| |||| || || ||||||||||||||||||||||| ||||||||| Sbjct 597 TAGGGATAACGATGGCCTTCGCCAGAGACTTGGAATTGCGGAGATAAACAACCATTACAA 656 Query 631 AGCACGAGAGAAGCATGTGAGTTTCGCTGAGAAAGGAGGAAGAGGAGAGATCATTGTTTT 690 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 657 AGCACGAGAGAAGCATGTGAGTTTCGCAGAGAAAGGAGGAAGAGGAGAGATCGTTGTTCT 716 Query 691 AT-AACGAACAAAGCAAGAGTAGCCATCAATTACCTATTGTCCACGACTGAAAAAATGCA 749 || || | |||||||||||||||||| ||||||| |||||||||| ||| |||| |||| Sbjct 717 ATGAA-GTACAAAGCAAGAGTAGCCAGCAATTACATATTGTCCACTACTTCAAAA-TGCA 774 Query 750 TTTGTTCGGACTCATATTTT 769 |||||| ||| || |||||| Sbjct 775 TTTGTTAGGATTCTTATTTT 794 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40287785894 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5