BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493762
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37840.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 922 0.0
> AT5G37840.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:15062008-15063402
REVERSE LENGTH=904
Length=904
Score = 922 bits (499), Expect = 0.0
Identities = 706/800 (88%), Gaps = 37/800 (5%)
Strand=Plus/Plus
Query 1 ACCAAATCCTTCTCAACATATAAATAGAAAGCGTTGCATACTTTATGAGATATA-T---- 55
|||||||||| ||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 1 ACCAAATCCTCCTCAACATATAAATAGATAGCGTTGCATGCTTTATGAGATATATTCAAC 60
Query 56 ------------AAAATGGGAAACACTAT-A-----AGGAGAAACAAGGCGAAAGTTATG 97
|||||||| |||||||| | ||||||||||||| ||||||||||
Sbjct 61 AAAAAAGACAGAAAAATGGGGAACACTATAATGGTGAGGAGAAACAAGGTGAAAGTTATG 120
Query 98 AAGATCGACGGTGATATTTTCCGGCTCAAAACTCCGGTGACGGCGAGTGACGCCACGAAA 157
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGATCGACGGCGATATTTTCCGGCTCAAAACTCCGGTGACGGCGAGTGACGCCACGAAA 180
Query 158 GAGTATCCCGGATTTGTGCTGTTAGACTCCGAGACCGTGAAACGGTTAGGAGTTCATGCC 217
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 181 GAGTATCCCGGATTCGTGCTGTTAGACTCCGAGACCGTGAAACGATTAGGAGTTCGCGCC 240
Query 218 AAACCGCTAGAGCCGAATCAGA-ACTTAAAGCCGAA-CAAAACTTATTTTTTGGTGGACC 275
||||| |||||||||||||| | | |||||||| || || | | ||||||||||||||||
Sbjct 241 AAACCTCTAGAGCCGAATCAAATA-TTAAAGCCTAATCACA-CATATTTTTTGGTGGACC 298
Query 276 TTCCGCCAGTAGATAAAAAGAATAAGCTTCCATACCGGAGAGTTATGTCCGGTAATATAC 335
|||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTCCACCGGTAGATAAGAGGAATAAGCTTCCATACCGGAGAGTTATGTCCGGTAATATAC 358
Query 336 ATATTGGCGCCAAGGAGCGTTTGGAGATGTTAATGCTTTCCCGGAGAACGGTTTCCGATG 395
|| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 359 ATGTTGGCGCAAAGGAGCGTTTAGAGATGTTAATGCTTTCAAGGAGAACGGTTTCTGATG 418
Query 396 TTGGTGCCGCAAGATCT-ACCG-A--AGCAGATGGGCCTGAGCTTGGACAAAGGAGGGTG 451
||||||| ||||||||| || | | || ||||||||||||||||||||| | |||||||
Sbjct 419 TTGGTGCAGCAAGATCTGAC-GTAGTAGGAGATGGGCCTGAGCTTGGACATACGAGGGTG 477
Query 452 AGATTAAGGCTGCCTAGGTCTCAGATCACAAAGTTAATGGGAGAGAGCCATGATGCTTCG 511
|| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 478 AGGTTAAGGCTGCCTAGGTCTCAGATAACAAAGTTAATGGAAGAGAGCCATGATGCTTCG 537
Query 512 GAAGTTGCGGCGA-GAATTATCAATGCTTATATGGAGAGTTCCGGTGAGATGCAAGGCGG 570
||||| || |||| || |||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 538 GAAGTGGCAGCGAAGA-TTATCAGTGCTTATATGGAGAGTTCCGGTGGGATACAAGGCGG 596
Query 571 CAAAGATAACGATGGTCTTCACCGGAAACTTGGAATTGCGGAGATAAACAGCCATTACAA 630
| ||||||||||| |||| || || ||||||||||||||||||||||| |||||||||
Sbjct 597 TAGGGATAACGATGGCCTTCGCCAGAGACTTGGAATTGCGGAGATAAACAACCATTACAA 656
Query 631 AGCACGAGAGAAGCATGTGAGTTTCGCTGAGAAAGGAGGAAGAGGAGAGATCATTGTTTT 690
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 657 AGCACGAGAGAAGCATGTGAGTTTCGCAGAGAAAGGAGGAAGAGGAGAGATCGTTGTTCT 716
Query 691 AT-AACGAACAAAGCAAGAGTAGCCATCAATTACCTATTGTCCACGACTGAAAAAATGCA 749
|| || | |||||||||||||||||| ||||||| |||||||||| ||| |||| ||||
Sbjct 717 ATGAA-GTACAAAGCAAGAGTAGCCAGCAATTACATATTGTCCACTACTTCAAAA-TGCA 774
Query 750 TTTGTTCGGACTCATATTTT 769
|||||| ||| || ||||||
Sbjct 775 TTTGTTAGGATTCTTATTTT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5