BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493763
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37850.1 | Symbols: SOS4, ATSOS4 | pfkB-like carbohydrate ki... 1914 0.0
> AT5G37850.1 | Symbols: SOS4, ATSOS4 | pfkB-like carbohydrate
kinase family protein | chr5:15065374-15068999 FORWARD LENGTH=1268
Length=1268
Score = 1914 bits (1036), Expect = 0.0
Identities = 1196/1271 (94%), Gaps = 20/1271 (2%)
Strand=Plus/Plus
Query 1 CAGCTCTTGATGCAATTCTCCTTCCCGACAACAACTACCACTTCTCCTCGATTCCTTAAT 60
||||||||||||| ||||||||||||||||||||| |||||||||| || ||||| |
Sbjct 12 CAGCTCTTGATGCCATTCTCCTTCCCGACAACAACAACCACTTCTCTTCCATTCC---A- 67
Query 61 CAAAATCTCCGGTTTTGC-TCAAACCTGAAT-TAATTTTCAATTATCGAGAAATTGGAGA 118
| || || | | || ||||| ||| || | || |||||||||| |||||
Sbjct 68 C--AAGGACCACAATCACTTC-AACCTTAATCGAAATCTC--CGATCGAGAAATAGGAGA 122
Query 119 ATGACGACGCCTCCAGTTCTATCTCTCGCTCTTCCTTCAGACACTGGTCGTGTTCTTAGT 178
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 123 ATGACGACGCCTCCAGTTCTATCTCTCGCTCTTCCTTCAGATACTGGTCGTGTTCTTAGT 182
Query 179 ATCCAATCCCACACTGTTCAGGGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ATCCAATCCCACACTGTTCAGGGATATGTTGGTAACAAATCAGCTGTCTTTCCTCTTCAA 242
Query 239 TTGTTGGGGTATGATGTGGATCCAATTAACTCAGTACAATTCTCAAATCATACTGGGTAT 298
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct 243 TTGTTGGGGTATGATGTGGATCCAATCAACTCTGTACAATTCTCGAATCATACAGGGTAT 302
Query 299 CCTACGTTCAAAGGACAGGTTTTGAATGGTCAGCAATTGTGTGATTTGATTGAAGGTCTT 358
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CCTACATTTAAAGGACAGGTTTTGAATGGTCAGCAATTGTGTGATTTGATTGAAGGTCTT 362
Query 359 GAAGCAAACGATTTGTTGTTCTACACTCATGTATTAACAGGTTATATTGGATCAGTGTCA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GAAGCAAACGATTTGTTGTTCTACACTCATGTATTAACAGGTTATATTGGATCAGTGTCA 422
Query 419 TTCCTGGATACAATTTTGGAGGTTATCAATAAGCTTCGCGCTGTAAACCCGAAACTTACA 478
|||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||
Sbjct 423 TTCCTGGATACAATTTTGGAGGTTATTAATAAGCTTCGCTCTGTAAACCCGAATCTTACA 482
Query 479 TATGTATGTGATCCGGTGATGGGTGATGAAGGAAAGTTGTATGTGCCTGAAGAATTGGTA 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 483 TATGTATGTGATCCGGTGATGGGTGATGAAGGAAAGTTGTATGTGCCTGAAGAACTGGTA 542
Query 539 CATGTTTATCGTGAAAAGGTTGTTCCCCTGGCTTCTATGTTGACTCCTAACCAGTTTGAG 598
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 543 CATGTTTATCGTGAAAAGGTTGTTCCCTTGGCTTCTATGTTGACTCCTAACCAGTTTGAG 602
Query 599 GCAGAGAAGTTAACAGGATTAAGGATAAATTCTGAGGAAGATGGCAGGGAAGCTTGTGCT 658
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GCAGAGAAGTTAACAGGACTAAGGATAAATTCTGAGGAAGATGGCAGGGAAGCTTGTGCT 662
Query 659 ATTCTTCATGCAGCTGGTCCTTCAAAGGTTGTGATCACTAGCATTACTATAGGAGGCATT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ATTCTTCATGCAGCTGGTCCTTCAAAGGTTGTGATCACTAGCATTACTATAGGAGGCATT 722
Query 719 CTATTACTTATTGGAAGCCATCAGAAAGAAAAGGGTCTCAAGCCTGAGCAATTCAAGATT 778
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CTATTACTTATCGGAAGCCATCAGAAAGAAAAGGGTCTCAAGCCTGAGCAATTCAAGATT 782
Query 779 TTGATACACAAAATCCCTGCTTATTTTACGGGAACAGGAGATCTCATGACTGCTCTTCTA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TTGATACACAAAATCCCTGCTTATTTTACGGGAACAGGAGATCTCATGACTGCTCTTCTA 842
Query 839 CTTGGTTGGAGTAATAAATACCCGGACAACCTTGACAAGGCAGCCGAGCTTGCAGTTTCA 898
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 843 CTTGGTTGGAGTAATAAATACCCTGACAACCTTGACAAAGCAGCCGAGCTTGCAGTTTCA 902
Query 899 ACGTTGCAGGCACTTCTGCGAAGGACACTTGATGATTACAAACGCGCTGGGTATGATCCT 958
||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 903 ACGTTGCAGGCGCTTTTGCGAAGGACGCTTGATGATTACAAACGAGCTGGGTATGATCCT 962
Query 959 ACCTCAAGCAGTTTGGAGATTAGATTAATACAAAGCCAAGAAGAAATTCGCAACCCAAAT 1018
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 963 ACCTCAAGCAGTTTGGAGATTAGATTGATACAAAGCCAGGAAGACATTCGCAACCCGAAG 1022
Query 1019 GTCGAACTGAAAGCTGAGAA-ATACAGCTGAAGCAGGTGAAAA--TGTAACACATTTATC 1075
||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||
Sbjct 1023 GTCGAACTGAAAGCTGA-AAGATACAGCTGAAGCAGGTGAAAAAATGTAACATATTTATC 1081
Query 1076 ATAAAATAAGAAAACATAGATGATTTTGGGGATACAATAATTATGTTGCACAATTCTTTT 1135
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1082 -TGAAATAAGAAAACATAGATGATTTTGGGGATACAATAATTATGTTGCACGATTCTTTT 1140
Query 1136 ATGCATATAAAAGAGTACAGACTTCAGAGTAATAGGATGTGCAAGAGCTCCTATAACTCA 1195
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1141 ATGCATATAAAAGAGTACAGACTTCAGAGTAATAGGATGTTCAAGAGCTCCTATAAAGCT 1200
Query 1196 TTTAAAACAGCCGTTAGACTGTTTTGTTTGTG-TACTTATCTTTCTATCATTTTGCTGGT 1254
|||||||||||| ||||||||||| ||||| | |||||||||||| |||||||||||| |
Sbjct 1201 TTTAAAACAGCC-TTAGACTGTTTGGTTTG-GATACTTATCTTTC-ATCATTTTGCTGAT 1257
Query 1255 GTTAATATGTT 1265
||||||| |||
Sbjct 1258 GTTAATACGTT 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62198475255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5