BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493768
Length=348
Score E
Sequences producing significant alignments: (Bits) Value
AT4G06495.1 | Symbols: | transposable element gene | chr4:3133... 169 2e-41
AT2G01029.1 | Symbols: | transposable element gene | chr2:2846... 158 4e-38
AT2G21460.1 | Symbols: | transposable element gene | chr2:9188... 156 2e-37
AT4G06496.1 | Symbols: | transposable element gene | chr4:3136... 154 5e-37
AT3G30816.1 | Symbols: | transposable element gene | chr3:1251... 152 2e-36
AT2G12540.1 | Symbols: | transposable element gene | chr2:5108... 150 7e-36
AT2G06860.1 | Symbols: | transposable element gene | chr2:2766... 150 7e-36
AT1G41797.1 | Symbols: | transposable element gene | chr1:1556... 150 7e-36
AT4G04655.1 | Symbols: | transposable element gene | chr4:2357... 147 9e-35
AT4G08760.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 141 4e-33
AT4G00140.1 | Symbols: EDA34 | Calcium-binding EF-hand family p... 139 2e-32
AT4G05300.1 | Symbols: | transposable element gene | chr4:2705... 139 2e-32
AT5G29060.2 | Symbols: | transposable element gene | chr5:1112... 134 7e-31
AT2G12385.1 | Symbols: | transposable element gene | chr2:4991... 130 9e-30
AT2G12530.1 | Symbols: | transposable element gene | chr2:5106... 117 7e-26
AT3G47240.1 | Symbols: | transposable element gene | chr3:1739... 102 2e-21
> AT4G06495.1 | Symbols: | transposable element gene | chr4:3133802-3135016
FORWARD LENGTH=1215
Length=1215
Score = 169 bits (91), Expect = 2e-41
Identities = 161/192 (84%), Gaps = 15/192 (8%)
Strand=Plus/Plus
Query 39 ggatagaccgatcgtcggacggatcggatcggacagaccgatcgtcggacggatca-gac 97
||| ||||||||||||||||||||||||| |||||| |||||||||||||||| || | |
Sbjct 694 GGACAGACCGATCGTCGGACGGATCGGATGGGACAGGCCGATCGTCGGACGGAACAGGTC 753
Query 98 agaccgatcgtcgga-cggatcAGATAGACCGATCGCGTATAAGGGAAAAGTGTTCGAAG 156
||| || | | || | | |||| || ||| | | || | ||||||||||||| |
Sbjct 754 GGACAGA-C--C-GATC-G-TCAG--AG-GGGAT-G-G-AT-CGAGAAAAGTGTTCGAGG 800
Query 157 AAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTCACC 216
|||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 801 AAGCACAAGGATAAGTGCATCCGAACAAACCCAAGGGTCGCCCATGGATGCAATCTTACC 860
Query 217 GGTAAAGGGAGA 228
||||||||||||
Sbjct 861 GGTAAAGGGAGA 872
> AT2G01029.1 | Symbols: | transposable element gene | chr2:28465-38652
FORWARD LENGTH=10188
Length=10188
Score = 158 bits (85), Expect = 4e-38
Identities = 170/207 (82%), Gaps = 22/207 (11%)
Strand=Plus/Plus
Query 43 agaccgatc-g-tcggacggatcggatcggacagaccgatcgtcggacggatc--a---g 95
|||| |||| | |||| | || |||||||||||||||||||||||||||| || | |
Sbjct 3787 AGACGGATCGGATCGGCCAGA-CGGATCGGACAGACCGATCGTCGGACGGGTCAGATGGG 3845
Query 96 acagaccgatcg--t--cgg-acggatcAGATAGACCGATCG-CGTAT-A-A--G---G- 141
|||| ||||||| | ||| |||| || || ||||| |||| || || | | | |
Sbjct 3846 ACAGGCCGATCGTCTGACGGAACGGGTCGGACAGACCAATCGTCGGATGAGATGGATCGA 3905
Query 142 GAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT 201
||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 3906 GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCAT 3965
Query 202 GGATGCAATCTCACCGGTAAAGGGAGA 228
||||||||||| |||| ||||||||||
Sbjct 3966 GGATGCAATCTTACCGATAAAGGGAGA 3992
Score = 152 bits (82), Expect = 2e-36
Identities = 170/208 (82%), Gaps = 24/208 (12%)
Strand=Plus/Plus
Query 43 agaccgatc-g-tcggacggatcggatcggacagaccgatcgtcggacggatc--a---g 95
|||| |||| | |||| | || |||||||||||||||||||||||||||| || | |
Sbjct 6721 AGACGGATCGGATCGGCCAGA-CGGATCGGACAGACCGATCGTCGGACGGGTCAGATGGG 6779
Query 96 acagaccgatcg--t--cgg-acggatcAGATAGACCGATCG-CGTAT-A-A--G---G- 141
|||| ||||||| | ||| |||| || || ||||| |||| || || | | | |
Sbjct 6780 ACAGGCCGATCGTCTGACGGAACGGGTCGGACAGACCAATCGTCGGATGAGATGGATCGA 6839
Query 142 GAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT 201
||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 6840 GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCAT 6899
Query 202 GGATGCAATCTCACCG-GTAAAGGGAGA 228
||||||||||| |||| | |||||||||
Sbjct 6900 GGATGCAATCTTACCGAG-AAAGGGAGA 6926
> AT2G21460.1 | Symbols: | transposable element gene | chr2:9188338-9194491
REVERSE LENGTH=6154
Length=6154
Score = 156 bits (84), Expect = 2e-37
Identities = 166/201 (83%), Gaps = 24/201 (12%)
Strand=Plus/Plus
Query 35 ggat-ggatagaccgatcgtcggacggatcggatcggac-agaccgatcg--t--cgg-a 87
|||| ||| |||||||||||||||||| |||||| |||| || ||||||| | ||| |
Sbjct 1606 GGATGGGACAGACCGATCGTCGGACGGGTCGGATGGGACAAG-CCGATCGTCTGACGGAA 1664
Query 88 cggatcagacagaccgatcgtcggacggatcAGATAGACCGATCGCGTATAAGGGAAAAG 147
||| ||||||||||| ||||||||| || ||| | ||| || | ||||||
Sbjct 1665 CGGGTCAGACAGACCAATCGTCGGATGG----GAT-G---GAT--CG----A--GAAAAG 1708
Query 148 TGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGC 207
||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1709 TGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCATGGATGC 1768
Query 208 AATCTCACCGGTAAAGGGAGA 228
||||| |||| ||||||||||
Sbjct 1769 AATCTTACCGATAAAGGGAGA 1789
> AT4G06496.1 | Symbols: | transposable element gene | chr4:3136680-3137837
FORWARD LENGTH=1158
Length=1158
Score = 154 bits (83), Expect = 5e-37
Identities = 177/219 (81%), Gaps = 20/219 (9%)
Strand=Plus/Plus
Query 30 ggattggat-ggatagaccgatcgtcggacggatcggatcggacagaccgatcgtcggac 88
|||| |||| || ||||| ||| |||||| ||||| ||||| ||||||| ||||||||||
Sbjct 708 GGATCGGATCGGCTAGACTGATGGTCGGAAGGATCAGATCGCACAGACCAATCGTCGGAC 767
Query 89 ggatc--a--gac-agaccgatcgtc-g--g--acggatcAGATAGACCGATCG-C---- 133
|||| | | | || ||||||||| | | |||| || || |||||||||| |
Sbjct 768 AGATCGGATGGGCTAGGCCGATCGTCAGACGAAACGGGTCGGACAGACCGATCGTCGGAG 827
Query 134 -GTAT--A-AGGGAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCA 189
| || | | |||||||||| || ||||||| |||||||||||| |||||||||||||
Sbjct 828 GGGATGGATCGAGAAAAGTGTTTGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCA 887
Query 190 AGGGTCGCCCATGGATGCAATCTCACCGGTAAAGGGAGA 228
||||||||||||||||||||||| |||||||||||||||
Sbjct 888 AGGGTCGCCCATGGATGCAATCTTACCGGTAAAGGGAGA 926
> AT3G30816.1 | Symbols: | transposable element gene | chr3:12511659-12513384
FORWARD LENGTH=1029
Length=1029
Score = 152 bits (82), Expect = 2e-36
Identities = 154/185 (83%), Gaps = 19/185 (10%)
Strand=Plus/Plus
Query 63 cggatcggacagaccgatcgtcggacggatc--a---gacagaccgatcg--t--cgg-a 112
|||||||||||||||||||||||||||| || | ||| | ||||||| | ||| |
Sbjct 439 CGGATCGGACAGACCGATCGTCGGACGGGTCAGATGGGACTGGCCGATCGTCTGACGGAA 498
Query 113 cggatcAGATAGACCGATCG-CGTAT-A-A-GG-----GAAAAGTGTTCGAAGAAGCACG 163
||| || || |||||||||| || || | | || ||||||||||||| |||||||
Sbjct 499 CGGGTCGGACAGACCGATCGTCGGATGAGATGGATCAAGAAAAGTGTTCGAGGAAGCACA 558
Query 164 AGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAG 223
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 559 AGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCATGGATGCAATCTTACCGATAAAG 618
Query 224 GGAGA 228
|||||
Sbjct 619 GGAGA 623
> AT2G12540.1 | Symbols: | transposable element gene | chr2:5108873-5110827
REVERSE LENGTH=1955
Length=1955
Score = 150 bits (81), Expect = 7e-36
Identities = 183/227 (81%), Gaps = 27/227 (12%)
Strand=Plus/Minus
Query 13 ggacggat-ggat--g--agtcggattggat-ggatagaccgatcgtcggacggatcgga 66
|||||||| |||| | || ||||| |||| |||||||||||||||||||||| |||||
Sbjct 1245 GGACGGATCGGATCAGCCAGACGGATCGGATCGGATAGACCGATCGTCGGACGGGTCGGA 1186
Query 67 tcggacagaccgatcg--t--c-ggacggatcagacagaccgatcgtcggacggatcAGA 121
| |||||| ||||||| | | | |||| || |||||| ||||||||||| || ||
Sbjct 1185 TGGGACAGTCCGATCGTCTAACAGAACGGGTCGGACAGAACGATCGTCGGATGG----GA 1130
Query 122 TAGACCGATCGCGTATAAGGGAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAA 181
| | ||| || | ||||||||||||| ||||||| | |||||||||| || ||
Sbjct 1129 T--A--GAT--CG----A--GAAAAGTGTTCGAGGAAGCACAAAGATAAGTGCATCCAAA 1082
Query 182 CACACCCAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAGGGAGA 228
||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1081 CACACCCAAGGGTCGCCCATGGATGCAATCTTACCAGTAAAGGGAGA 1035
> AT2G06860.1 | Symbols: | transposable element gene | chr2:2766356-2772445
FORWARD LENGTH=2817
Length=2817
Score = 150 bits (81), Expect = 7e-36
Identities = 184/228 (81%), Gaps = 29/228 (13%)
Strand=Plus/Plus
Query 13 ggacggat-ggat--g--agtcggattgga-tggatagaccgatcgtcggacggatcgga 66
|||||||| |||| | || ||||||||| ||| | ||||||| |||||||||||||
Sbjct 2402 GGACGGATCGGATCGGCCAGACGGATTGGACCGGACAAACCGATCATCGGACGGATCGGG 2461
Query 67 tcggac-agaccgatcgt----cgg-acggatcagacagaccgatcgtcggacggatcAG 120
| |||| || |||||||| ||| |||| | |||||||| ||||||| | || | |
Sbjct 2462 TGGGACAAG-CCGATCGTCAGACGGAACGGGTTAGACAGACTGATCGTC-G--GG-T--G 2514
Query 121 ATAGACCGATCGCGTATAAGGGAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGA 180
| ||| | | || ||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 2515 ---G---GAT-G-G-AT-CGGGAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGA 2564
Query 181 ACACACCCAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAGGGAGA 228
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2565 ACACACCCAAGGGTCGCCCATGGATGCAATCTTACCGGTAAAGGGAGA 2612
> AT1G41797.1 | Symbols: | transposable element gene | chr1:15560039-15563509
REVERSE LENGTH=3471
Length=3471
Score = 150 bits (81), Expect = 7e-36
Identities = 166/202 (82%), Gaps = 26/202 (13%)
Strand=Plus/Minus
Query 35 ggat-ggatagaccgatcgtcggacggatcggatcggacagaccgatcg--t--cgga-c 88
|||| ||| |||||||||||||||||| |||||| |||||| ||||||| | |||| |
Sbjct 687 GGATCGGACAGACCGATCGTCGGACGGGTCGGATGGGACAGGCCGATCGTCTGACGGAGC 628
Query 89 ggatcag-acagaccgatcgtcggacggatcAGATAGACCGATCGCGTATAAGGGAAAAG 147
|| || | ||| ||||||||||||| || ||| | ||| || | ||||||
Sbjct 627 GGGTC-GAACAAACCGATCGTCGGATGG----GAT-G---GAT--CG----A--GAAAAG 585
Query 148 TGTTCGAA-GAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATG 206
||||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 584 TGTTC-AAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCATGGATG 526
Query 207 CAATCTCACCGGTAAAGGGAGA 228
|||||| |||||||||||||||
Sbjct 525 CAATCTTACCGGTAAAGGGAGA 504
> AT4G04655.1 | Symbols: | transposable element gene | chr4:2357418-2364944
FORWARD LENGTH=7527
Length=7527
Score = 147 bits (79), Expect = 9e-35
Identities = 160/195 (82%), Gaps = 21/195 (11%)
Strand=Plus/Minus
Query 39 ggatagaccgatcgtcggacggatcggatcggacagaccgatcg--t--cgg-acggatc 93
||| |||||||||||||||||| |||||| ||| || ||||||| | ||| |||| ||
Sbjct 5148 GGACAGACCGATCGTCGGACGGGTCGGATGGGATAGGCCGATCGTCTGACGGAACGGGTC 5089
Query 94 agacagaccgatcgtcggacggatcAGATAGACCGATCGCGTATAAGGGAAAAGTGTTCG 153
|||||||||||| ||||| || ||| | ||| || | ||||||||||||
Sbjct 5088 GGACAGACCGATCATCGGATGG----GAT-G---GAT--CG----A--GAAAAGTGTTCG 5045
Query 154 AAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTC 213
| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 5044 AGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCATGGATGCAATCTT 4985
Query 214 ACCGGTAAAGGGAGA 228
|||| ||||||||||
Sbjct 4984 ACCGATAAAGGGAGA 4970
> AT4G08760.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: nucleolin like 1 (TAIR:AT1G48920.1); Has 36 Blast hits
to 36 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:5584739-5591133 REVERSE
LENGTH=1566
Length=1566
Score = 141 bits (76), Expect = 4e-33
Identities = 157/191 (82%), Gaps = 25/191 (13%)
Strand=Plus/Minus
Query 35 ggat-ggatagaccgatcgtcggacggatcggatcggaca-gaccgatcg--t--cgga- 87
|||| ||| |||||||||||||||||| |||||| ||||| | ||||||| | ||||
Sbjct 1135 GGATCGGACAGACCGATCGTCGGACGGGTCGGATGGGACATG-CCGATCGTCTGACGGAT 1077
Query 88 cggatcagacagaccgatcgtcggacggatcAGATAGACCGATCGCGTATAAGGGAAAAG 147
||| || |||||||||||||||||| || ||| | ||| || | ||||||
Sbjct 1076 CGGGTCGGACAGACCGATCGTCGGATGG----GAT-G---GAT--CG----A--GAAAAG 1033
Query 148 TGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGC 207
||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1032 TGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCATGGATGC 973
Query 208 AATCT-CACCG 217
||||| |||||
Sbjct 972 AATCTTCACCG 962
> AT4G00140.1 | Symbols: EDA34 | Calcium-binding EF-hand family
protein | chr4:51166-53449 REVERSE LENGTH=774
Length=774
Score = 139 bits (75), Expect = 2e-32
Identities = 83/87 (95%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 142 GAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT 201
||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 532 GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCAT 591
Query 202 GGATGCAATCTCACCGGTAAAGGGAGA 228
||||||||||| |||||||||||||||
Sbjct 592 GGATGCAATCTTACCGGTAAAGGGAGA 618
> AT4G05300.1 | Symbols: | transposable element gene | chr4:2705670-2708158
FORWARD LENGTH=1164
Length=1164
Score = 139 bits (75), Expect = 2e-32
Identities = 178/223 (80%), Gaps = 25/223 (11%)
Strand=Plus/Plus
Query 29 cggattggat-ggatagaccgatc-g-tcggacggatcggatcggacagaccgatcgtcg 85
||||| |||| || |||| |||| | |||| | || |||||||||| ||| ||||||||
Sbjct 769 CGGATCGGATCGGCCAGACGGATCGGATCGGCCAGA-CGGATCGGACTGACTGATCGTCG 827
Query 86 gacggatc--a---gacagaccgatcgtc-g---g-ac-ggatcAGATAGACCGATC-GC 133
||||| || | ||||| ||||||||| | | || ||| | || ||||||||| |
Sbjct 828 GACGGGTCAGATGGGACAGGCCGATCGTCTGACAGAACGGGA-CGGACAGACCGATCATC 886
Query 134 -G-T---AT--A-AGGGAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACA 185
| | || | | ||||||||||||| ||||||| |||||||||||| |||| ||||
Sbjct 887 GGATGGGATGGATCGAGAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAGCACA 946
Query 186 CCCAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAGGGAGA 228
||||||||||||||||||||||||||| |||||||||||||||
Sbjct 947 CCCAAGGGTCGCCCATGGATGCAATCTTACCGGTAAAGGGAGA 989
> AT5G29060.2 | Symbols: | transposable element gene | chr5:11128470-11129537
REVERSE LENGTH=1068
Length=1068
Score = 134 bits (72), Expect = 7e-31
Identities = 82/87 (94%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 142 GAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT 201
||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct 747 GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACTCAAGGGTCGCCCAT 806
Query 202 GGATGCAATCTCACCGGTAAAGGGAGA 228
|||||||||||||||| ||||||||||
Sbjct 807 GGATGCAATCTCACCGATAAAGGGAGA 833
> AT2G12385.1 | Symbols: | transposable element gene | chr2:4991988-4995221
REVERSE LENGTH=3234
Length=3234
Score = 130 bits (70), Expect = 9e-30
Identities = 161/204 (79%), Gaps = 10/204 (5%)
Strand=Plus/Plus
Query 29 cggattggat-ggatagaccgatcgtcggacggatcggatcggacagaccgatcgtcgga 87
||||| |||| ||| ||| |||| || ||||||||||||||||||||| ||||||| |||
Sbjct 2176 CGGATCGGATCGGACAGATCGATAGTTGGACGGATCGGATCGGACAGATCGATCGTTGGA 2235
Query 88 cggatcaga-cagaccgatcgtcg-gacggatcAGATAGACC--GAT-CGCGTATAAGGG 142
| | || | || | | | | ||||||| | |||| ||| ||| || |||
Sbjct 2236 -TAAACGGATCGGATCTAACAAAGAGACGGAT--TACCGACCGGGATAGGCGGAT-CGGG 2291
Query 143 AAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATG 202
||| |||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||
Sbjct 2292 AAAGGTGTTCGAGGAAGCACAAAGATAAGTGCATCCGAACACACCCAAGGGTCGCCCATG 2351
Query 203 GATGCAATCTCACCGGTAAAGGGA 226
|||||||| | |||| |||| |||
Sbjct 2352 GATGCAATATTACCGATAAAAGGA 2375
> AT2G12530.1 | Symbols: | transposable element gene | chr2:5106678-5106974
REVERSE LENGTH=297
Length=297
Score = 117 bits (63), Expect = 7e-26
Identities = 79/87 (91%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 142 GAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT 201
|||| |||||||| ||||||| | |||||||||| || ||||||||||||||||||||||
Sbjct 241 GAAAGGTGTTCGAGGAAGCACAAAGATAAGTGCATCCAAACACACCCAAGGGTCGCCCAT 182
Query 202 GGATGCAATCTCACCGGTAAAGGGAGA 228
||||||||||| ||| |||||||||||
Sbjct 181 GGATGCAATCTTACCAGTAAAGGGAGA 155
> AT3G47240.1 | Symbols: | transposable element gene | chr3:17393861-17394988
REVERSE LENGTH=720
Length=720
Score = 102 bits (55), Expect = 2e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 165 GGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAGG 224
||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 GGATAAGTGCATCCGGACACACCCAAGGGTCGCCCATGGATGCAATCTTACCGGTAAAGG 476
Query 225 GAGA 228
||||
Sbjct 477 GAGA 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16286750676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5