BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493775
Length=2395
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42080.1 | Symbols: ADL1, ADL1A, AG68, DRP1A, RSW9, DL1 | dy... 3781 0.0
> AT5G42080.1 | Symbols: ADL1, ADL1A, AG68, DRP1A, RSW9, DL1 |
dynamin-like protein | chr5:16820284-16824756 REVERSE LENGTH=2430
Length=2430
Score = 3781 bits (2047), Expect = 0.0
Identities = 2290/2405 (95%), Gaps = 25/2405 (1%)
Strand=Plus/Plus
Query 1 TTCTTCATCGACTCAAATTCAAAAACTCAtctctctctatctctctTTCTTTGGTTCCAT 60
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 22 TTCTTCATCGACTCAAATTCAAAAACTCATCTCTCTCTATCTCTATTTCTCTGGTTCCAT 81
Query 61 AGCTCACCGTCGCATCGCAGATCTACACCTGCCGGAGTAGATTTTACCGGCGGAGGTATC 120
|||||||||||||||||||||||||| ||| ||| | || ||||||||||||||||||||
Sbjct 82 AGCTCACCGTCGCATCGCAGATCTACTCCTTCCGCAATAAATTTTACCGGCGGAGGTATC 141
Query 121 AGATCTCGCCGATCTGTTCTAGCTGCTACTGTATTTTGAG-TTCTTCATTTGATATTGGG 179
|||||||||||||||||| |||| |||||||||||||| | ||| |||||||||||||||
Sbjct 142 AGATCTCGCCGATCTGTTGTAGCAGCTACTGTATTTTGGGCTTC-TCATTTGATATTGGG 200
Query 180 GAAACGAGGAGTAGAGAACGATGGAGAATCTGATCTCTCTGGTTAACAAGATACAGAGAG 239
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 201 GAAACGAGGAGTAGAGGACGATGGAAAATCTGATCTCTCTGGTTAACAAGATACAGAGAG 260
Query 240 CTTGCACGGCTTTAGGAGACCATGGAGACTCCAGCGCTTTACCTACTCTTTGGGATTCCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CTTGCACGGCTTTAGGAGACCATGGAGACTCCAGCGCTTTACCTACTCTTTGGGATTCCT 320
Query 300 TACCTGCGATTGCCGTCGTTGGTGGTCAGAGTTCAGGGAAGTCTTCAGTCCTGGAGAGCA 359
| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 321 TGCCTGCGATCGCCGTCGTTGGTGGTCAGAGCTCAGGGAAGTCTTCAGTCCTGGAGAGCA 380
Query 360 TCGTGGGAAAGGACTTTTTACCCCGTGGATCTGGCATCGTTACTCGAAGGCCCCTTGTCT 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 381 TCGTGGGAAAGGACTTTTTACCCCGTGGATCTGGCATTGTTACTCGAAGGCCCCTTGTCT 440
Query 420 TACAGTTGCAAAAGATCGAAGATGGAACCCGTGAGTATGCAGAGTTTCTTCACCTCCCGA 479
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 441 TACAGTTGCAAAAGATCGATGATGGAACCCGGGAGTATGCAGAGTTTCTTCACCTCCCGA 500
Query 480 GGAAAAGGTTTACTGATTTTGCTGCTGTGAGGAAGGAGATTCAAGATGAGACTGACAGAG 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 GGAAAAAGTTTACTGATTTTGCTGCTGTGAGGAAGGAGATTCAAGATGAGACTGACAGAG 560
Query 540 AGACTGGACGCAGCAAGGCTATTTCTAGTGTTCCCATTCACCTTAGCATATACTCTCCCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AGACTGGACGCAGCAAGGCTATTTCTAGTGTTCCCATTCACCTTAGCATATACTCTCCCA 620
Query 600 ATGTTGTCAACTTGACACTGATAGATCTTCCAGGGCTTACAAAAGTTGCTGTAGATGGAC 659
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 621 ATGTTGTCAACTTGACACTGATAGATCTTCCAGGGCTTACAAAAGTTGCTGTTGATGGAC 680
Query 660 AATCTGATAGTATAGTGAAGGACATTGAAAACATGGTTCGGTCCTACATTGAAAAGCCCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AATCTGATAGTATAGTGAAGGACATTGAAAACATGGTTCGGTCCTACATTGAAAAGCCCA 740
Query 720 ACTGCATCATTTTGGCAATCTCACCTGCAAACCAAGATCTTGCTACCTCAGATGCAATTA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACTGCATCATTTTGGCAATCTCACCTGCAAACCAAGATCTTGCTACCTCAGATGCAATTA 800
Query 780 AAATTTCCCGTGAGGTTGATCCATCGGGGGAGAGAACATTTGGTGTCTTGACAAAGATTG 839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 801 AAATTTCCCGTGAGGTTGATCCATCGGGGGACAGAACATTTGGTGTCTTGACAAAGATTG 860
Query 840 ATCTTATGGACAAGGGGACTGATGCAGTGGAAATTCTGGAAGGGAGATCTTTTAAACTTA 899
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 861 ATCTTATGGACAAGGGGACGGATGCAGTGGAAATTCTGGAAGGGAGATCTTTTAAACTTA 920
Query 900 AATATCCATGGGTTGGTGTCGTCAACCGTTCCCAAGCAGATATTAACAAGAATGTCGACA 959
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AATATCCGTGGGTTGGTGTCGTCAACCGTTCCCAAGCAGATATTAACAAGAATGTCGACA 980
Query 960 TGATTGCGGCTCGGAAAAGAGAGAGGGAATACTTTTCCAATACTACTGAGTATAGGCACC 1019
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 981 TGATTGCGGCTCGGAAAAGAGAGAGGGAGTACTTTTCCAATACTACTGAGTATAGGCACC 1040
Query 1020 TTGCTCATAAAATGGGTTCCGAGCATTTGGCAAAGATGCTATCCAAGCATCTCGAACATG 1079
||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct 1041 TTGCTAATAAAATGGGTTCCGAGCATTTGGCAAAGATGCTCTCCAAGCATCTAGAACGTG 1100
Query 1080 TGATCAAGTCGAGAATTCCAGGCATTCAGTCACTTATTAACAAAACAGTATCAGAGCTGG 1139
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1101 TGATCAAGTCGAGAATTCCTGGCATTCAGTCACTTATTAACAAAACAGTATTAGAGCTGG 1160
Query 1140 AAAGTGAACTAAGTCGCCTTGGAAAGCCTATTGCAGCTGATGCAGGGGGGAAGTTGTACT 1199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 AAACTGAACTAAGTCGCCTTGGAAAGCCTATTGCAGCTGATGCAGGGGGGAAGTTGTACT 1220
Query 1200 CAATAATGGAGATATGTCGGCTTTTTGATCAAATATTCAAGGAGCATCTTGATGGAGTGC 1259
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1221 CAATAATGGAGATATGTCGGCTTTTTGATCAAATATTCAAAGAGCATCTTGATGGAGTGC 1280
Query 1260 GTGCTGGTGGTGAAAAAGTGTATAACGTGTTTGATAACCAGCTTCCTGCGGCTCTGAAGA 1319
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1281 GTGCTGGTGGTGAAAAAGTGTACAACGTGTTTGATAACCAGCTTCCTGCGGCTCTGAAGA 1340
Query 1320 GACTCCAATTTGACAAGCAGCTAGCGATGGACAACATCCGGAAGCTGGTCACTGAGGCTG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 GACTCCAATTTGACAAGCAGCTAGCGATGGACAACATCCGGAAGCTGGTCACTGAGGCTG 1400
Query 1380 ATGGTTACCAGCCTCACTTGATTGCTCCTGAGCAAGGTTACCGTCGTCTCATTGAGTCTT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 ATGGTTACCAGCCTCACTTGATTGCTCCTGAGCAAGGTTACCGTCGTCTCATTGAGTCTT 1460
Query 1440 CTATTGTCTCCATCAGAGGCCCTGCTGAAGCATCTGTTGACACCGTTCATGCCATCTTGA 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1461 CTATTGTCTCCATCAGAGGCCCTGCTGAAGCATCTGTTGACACCGTTCATGCTATCTTAA 1520
Query 1500 AGGATCTGGTTCACAAGTCTGTGAATGAGACTGTGGAACTAAAGCAATACCCAGCTCTGA 1559
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1521 AGGATCTGGTTCACAAGTCTGTGAATGAAACTGTGGAACTAAAACAATACCCAGCTCTGA 1580
Query 1560 GAGTGGAGGTGACAAACGCAGCCATAGAGTCGCTGGATAAAATGCGGGAAGGAAGTAAGA 1619
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 1581 GAGTGGAGGTGACAAATGCGGCGATAGAGTCGCTGGATAAAATGCGGGAAGGAAGTAAGA 1640
Query 1620 AAGCAACACTGCAGCTTGTTGACATGGAGTGCAGTTACCTCACTGTTGATTTCTTCAGGA 1679
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1641 AAGCAACACTGCAGCTGGTTGACATGGAGTGCAGTTACCTCACTGTTGATTTCTTCAGGA 1700
Query 1680 AACTTCCCCAGGATGTTGAGAAGGGTGGTAACCCCACACACTCCATTTTCGACCGCTACA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 AACTTCCCCAGGATGTTGAGAAGGGTGGTAACCCCACACACTCCATTTTCGACCGCTACA 1760
Query 1740 ACGATTCCTATCTCAGACGAATCGGATCCAATGTTTTGTCTTACGTGAACATGGTCTGTG 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 ACGATTCCTATCTCAGACGAATCGGATCCAATGTTTTGTCTTACGTGAACATGGTCTGTG 1820
Query 1800 CTGGCCTGCGAAATTCAATCCCCAAGTCCATCGTATACTGCCAAGTCCGAGAAGCCAAGC 1859
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1821 CTGGCCTGCGGAATTCAATCCCCAAGTCCATCGTATACTGCCAAGTCCGAGAAGCGAAGC 1880
Query 1860 GCAGTCTCCTTGACCATTTCTTCGCCGAACTCGGTACCATGGACATGAAGAGGCTTTCGT 1919
|||||||||| ||||||||||| || || |||||||||||||| ||||||||||| ||||
Sbjct 1881 GCAGTCTCCTCGACCATTTCTTTGCGGAGCTCGGTACCATGGATATGAAGAGGCTCTCGT 1940
Query 1920 CTCTGTTAAACGAAGATCCAGCCATCATGGAGAGACGCAGTGCCATCTCAAAGCGGCTAG 1979
| || || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1941 CGCTATTGAACGAAGATCCAGCAATCATGGAGAGACGCAGTGCCATCTCAAAGCGGCTAG 2000
Query 1980 AGTTGTATCGAGCAGCCCAATCCGAGATCGACGCTGTTGCTTGGTCCAAGTGAAACCGGC 2039
| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 2001 AATTGTATCGAGCAGCCCAATCCGAGATCGATGCTGTTGCTTGGTCCAAGTGATACCGGC 2060
Query 2040 ATCTCATGTCCACTGTTTTGCTCGGTTCTGGTCGGTCGGTGTGGCTCAGACTCGGAACAG 2099
|| ||||||||||||||||||||||||||||||||| | || | |||||||||||| |||
Sbjct 2061 ATGTCATGTCCACTGTTTTGCTCGGTTCTGGTCGGT-G-TG-G-CTCAGACTCGGAGCAG 2116
Query 2100 AGATTTAGGTTGTGTAATTTTTATAAGATGGTCTTCCCGATACCATGCAATATCGTTTTA 2159
||||||||| | |||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 2117 AGATTTAGGGTCTGTAATTTGTATAAGATGATCTTCCCGATACCATGCAGTATCGTTTTA 2176
Query 2160 TATAACATC-ATATTGTTTGTCCTACCTCTTTGTTTTTTGTCCATCACCCGATATGTTAT 2218
||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2177 TATAACATCCACATTGTTTGTCCTACCTCTATGTTTTTTGTCCATCACCCGATATGTTAC 2236
Query 2219 GTAGATCGTTTTATAACATCCACATTGTTTATTCTACCACTC-TGCTTTTTTGTCGATCA 2277
||| ||||||||||||||||||||||||| | || || || || ||||||||| ||||
Sbjct 2237 GTA--TCGTTTTATAACATCCACATTGTTTGTCCTGCCTCTAATG-TTTTTTGTCCATCA 2293
Query 2278 CCC-ATTATGCTGCAG-ATATTTGT-TC-CAATCCACATAGGTATACATTGGTCCCTGG- 2332
||| || ||| | | | || ||| | | || ||||||||| | || ||| || ||
Sbjct 2294 CCCGAT-ATGTTAC-GTATCTTT-TATAACA-TCCACATAGAT-TAGATTT-TCTCTATT 2347
Query 2333 CAGTG-ATTAACAT-ACTATAAAATATGTTTTTTGCATATGATAAtttttttGTAACAAT 2390
| | ||| | || |||||||||| | ||||| |||||||||||||||| |||||||||
Sbjct 2348 CCCTTTATTTA-ATTACTATAAAATGTATTTTTCGCATATGATAATTTTTCTGTAACAAT 2406
Query 2391 AGTAT 2395
|||||
Sbjct 2407 AGTAT 2411
Score = 110 bits (59), Expect = 9e-23
Identities = 85/96 (89%), Gaps = 7/96 (7%)
Strand=Plus/Plus
Query 2150 TATCGTTTTATATAACAT-CATATTGTTTGTCCTACCTCT-TTGTTTTTTGTCCATCACC 2207
||||| ||| |||||||| || |||||||||||| ||||| ||||||||||||||||||
Sbjct 2238 TATCG-TTT-TATAACATCCACATTGTTTGTCCTGCCTCTAATGTTTTTTGTCCATCACC 2295
Query 2208 CGATATGTTATGTAGATCGTTTTATAACATCCACAT 2243
|||||||||| ||| || |||||||||||||||||
Sbjct 2296 CGATATGTTACGTA--TC-TTTTATAACATCCACAT 2328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118925091105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5