BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493784
Length=2298
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42010.1 | Symbols: | Transducin/WD40 repeat-like superfami... 3419 0.0
> AT5G42010.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:16802280-16805013 FORWARD LENGTH=2386
Length=2386
Score = 3419 bits (1851), Expect = 0.0
Identities = 2104/2228 (94%), Gaps = 10/2228 (0%)
Strand=Plus/Plus
Query 1 ATGGGTACTCGAGGGAACGAGGAAGAGGAAGATTGGTTTTGTGATGCTCGTGAAGAGGTT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1 ATGGGTACTCGAGGGAACGAGGAAGAGGAAGATTGGTTTTCTGATGCTCGTGAGGAGGTT 60
Query 61 TCATCTGTTTCTGATTGTAACTCTGAAGTCGCCGATGAATTTGTTCAAGCAACTGGTGAT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TCATCTGTTTCTGATTGTAACTCTGAAGTCGCCGATGACTTTGTTCAAGCAACTGGTGAT 120
Query 121 TTAGATCTCTGGACTATGAATCCAGAGAGTGTTACCAACCGTCGACAAAAGTTTTTTCAA 180
|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 121 TTAGATCTTTGGACTATGAATCCAGAGAGTGTTACTAACCGTAGACAAAAGTTTTTTCAA 180
Query 181 TCTATGGGTTTTAGTTTCAAAAAACGAGACTTTGATCTTGATCTTGATCTGTTGGGAGAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTATGGGTTTTAGTTTCAAAAAACGAGACTTTGATCTTGATCTTGATCTGTTGGGAGAC 240
Query 241 TCTAGTTCCGACCATATTCCGGTTTCGAAACAGTTGAACTCTGTGTCTGAAACTGATCAT 300
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TCTAGTTCCGACCATATTCCGGTTTCGAAACAGTTGACCTCTGTGTCTGAAACTGATCAC 300
Query 301 GAGGAGGAAGAGAAGGAGGAGAAGTTGTTGAGGAATGAATCTACTTCCTCTGGATCCTCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGGAGGAAGAGAAGGAGGAGAAGTTGTTGAGGAATGAATCTACTTCCTCTGGATCCTCC 360
Query 361 GTTTCATCAATGTCAACTTCTTCTTTGGCTGAGGCATTTAGTTTCAGAGGTTCATTTCTG 420
|||||||| | |||||| | ||||||||||| |||||||||||||||||||| |||| |
Sbjct 361 GTTTCATCTTTCTCAACTGCATCTTTGGCTGAAGCATTTAGTTTCAGAGGTTCTTTTCAG 420
Query 421 AATCGTGCCAAGAATATAGATGATCAGATTTTGCTGACAAGAGATTATTCCAGTAATAGC 480
|||||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 421 AATCGTGCCAAGAACATTGATGATCAGATTTTGCTGACGAGAGACTATTCAAGTAATAGT 480
Query 481 AGTAGCATTGCTGAGGGATTGAGTGAATCTGGTTCGAGTAGGTTTGATAGCTATGGAGAT 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 AGTAGCATTGCTGAGGGATTGAGTGAATCTGATTCGAGTAGGTTTGATAGCTATGGAGAT 540
Query 541 CTGCAGAACTCTCCAATGAGTCATTATGAAGAATCGCCTAAAAAAGGAGCTAAAGGGTGG 600
| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 TTACCGAACTCTCCAATGAGTCGTTATGAAGAATCGCCTAAAAAAGGAGCTAAAGGGTGG 600
Query 601 ATAAAGAAGTTAGGTGTGTTAACTCATATTCTTGACAAAACTGAAGAGTGCACTGATGGT 660
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 TTAAAGAAGTTAGGTGTGTTAACTCATGTTCTTGACAAAACTGAAGAGTGCACTGATGGT 660
Query 661 GAGTCAATGGGATCATCGATACGGAGACAATTAACTAGAGTTCAATCGTTTAAAAAGCAG 720
||||||| | |||||||||||||||| ||||||||| ||||||| || ||||| |||||
Sbjct 661 GAGTCAACGAGATCATCGATACGGAGGCAATTAACTCGAGTTCAGTCTTTTAAGAAGCAA 720
Query 721 TTCAAGGAGCTTTCGTCTCTTTGTATCGGACAGGAGTTCTCTGCGCATGATGGATCCATT 780
|||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 721 TTCAAGGAGCTTTCGTCTCTGTGTGTCGGACAAGAGTTCTCTGCGCATGATGGATCCATA 780
Query 781 GTAGTTATGAAGTTTTCGCATGATGGGAAGTACTTAGCTAGTGCTGGTGAAGATTGTGTT 840
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTAGTGATGAAGTTTTCTCATGATGGGAAGTACTTAGCTAGTGCTGGTGAAGATTGTGTT 840
Query 841 GTGCGAGTGTGGAACATAACGGAAGACGAGAGAAGAGACAACGAGTTTGAAGTGGCGGAG 900
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||
Sbjct 841 GTGCGAGTGTGGAACATAATTGAAGATGAGAGAAGGGACAACGAGTTTGAAGTGGCTGAG 900
Query 901 TCTGATTCAAGCTGTGTCTACTTTGGAATGAATGACAAGTCACAGATTGAGCCTCTCAAG 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTGATTCAAGCTGTGTTTACTTTGGAATGAATGACAAGTCACAGATTGAGCCTCTCAAG 960
Query 961 ACTGAGAATGAGAAGATCGAAAAGAGCAGAAGATTGTTGAGGAAGAAGTCAGAATCGACT 1020
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 ACTGAGAATGAGAAGATCGAAAAGAGCAGAGGATTGTTGAGGAAGAAGTCAGAATCGACT 1020
Query 1021 TGCGCTGTGTTGCCCTCAAAAGT-TTTCAGTATATCTGAAACCCCTCAGCACGAGTTCCG 1079
|||||||||||||| |||||||| ||| ||||||||||||||||| || |||||||||||
Sbjct 1021 TGCGCTGTGTTGCCTTCAAAAGTCTTT-AGTATATCTGAAACCCCGCAACACGAGTTCCG 1079
Query 1080 AGGACATACGGGTGAAATCTTGGATCTTTCTTGGTCGGAGAAAGGGTTTCTACTGTCATC 1139
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 AGGACATACTGGTGAAATCTTGGATCTTTCATGGTCGGAGAAAGGGTTTCTACTGTCATC 1139
Query 1140 TTCAGTGGATGAGACTGTTCGGTTGTGGCGAGTTGGTTCTTCTGATGAATGTATCAGAGT 1199
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCCGTGGACGAGACTGTTCGTTTGTGGCGAGTTGGTTCTTCTGATGAATGTATCAGAGT 1199
Query 1200 TTTCTCTCATAAGAGTTTTGTGACTTGTGTGGCATTTAATCCTGTGGATGACAATTACTT 1259
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1200 TTTCTCTCATAAGAGTTTTGTGACTTGTGTGGCATTCAATCCTGTGGATGACAATTACTT 1259
Query 1260 TATAAGCGGATCGATTGATGGCATAGTTCGTATATGGGATGTGTCTCATTTCCGAGTTGT 1319
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1260 TATAAGCGGATCGATTGATGGCAAAGTTCGTATATGGGATGTGTCTCAGTTCCGAGTTGT 1319
Query 1320 TGACTATACAGATATAAGAGAGATTGTTACAGCCTTGTGCTATTACCCTGATGCTAAGGG 1379
||||||||| ||||||||| ||||||||||||| ||||||||| |||||||| ||||||
Sbjct 1320 TGACTATACTGATATAAGACAGATTGTTACAGCTTTGTGCTATCGCCCTGATGGTAAGGG 1379
Query 1380 TGCTGTTGTAGGTTCTATGACTGGCGAATGTCGCTTTTACCATACAACTGATAACCAGCT 1439
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 TGCAGTAGTAGGTTCTATGACTGGCGAGTGTCGCTTTTACCATACAACTGATAACCAGCT 1439
Query 1440 GCAACTGGATAGAGAGATCAGTTTACATGGGAAGAAGAAGGTTCCTAACAAAAGAATCAC 1499
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GCAACTGGATAGAGATATCAGTTTACATGGGAAGAAGAAGGTTCCTAACAAAAGAATCAC 1499
Query 1500 CGGTTTTCAGTTTTTTCCTGGTGATTCGGACAAAGTGATGGTTACTTCTGCTGATTCTCA 1559
||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1500 CGGTTTTCAGTTTTTCCCCGGAGATTCAGACAAAGTGATGGTTACTTCTGCTGATTCTCA 1559
Query 1560 ACTCCGAATAATAAGCGGAGTGGATACAATCTGCAAGCTTAAAAAATCTTCAAGTCTTCG 1619
| | |||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1560 AATACGAATAATCTGCGGTGTGGATACAATCTGCAAGCTTAAGAAAGCTTCAAGTCTTCG 1619
Query 1620 AACAACTCTGATGAGTCCAACATTTGCTTCATTCACGTCTGATGGGAAACACATTGTCTC 1679
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1620 AACAACACTGATGAGTCCAACATTTGCTTCATTCACATCTGATGGGAAACACATTGTCTC 1679
Query 1680 AACAATAGAAGACTCAGGCATTCATGTTTGGGACTACTCTCAACCAAACAAAAAGGTGTC 1739
|||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 1680 AACAATAGAAGAGTCAGGCATTCATGTTTGGGACTTCTCTCAACCCAACAAAAAGGCATC 1739
Query 1740 TTCTCAGAAACCAAAGACCATCAGATCTTATGAGGGATTTCTCTCACAAAATGTGTCTGT 1799
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1740 TTCTCAGAAACCAAAGACCATCAGATCTTATGAGGGATTTCTATCGCGAAATGTGTCTGT 1799
Query 1800 GGCCATACCTTGGCTAGGCCAGGGGAAGGAGGAAACTATCATAGCCGATTTGGAAAAAAG 1859
||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 1800 GGCCATACCTTGGCTAGGCCAGGGGAAGGAGGACAGTATCATAGCAGATTTGGAAAAAAG 1859
Query 1860 TTTTGCTCATTTCCCGGCTCCCATGGACTATTTCTCTCCAATGAAAGGAGCAACTACATG 1919
||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1860 TTTTGCTCATTTCCCTGTTCCCTTGGACTATTTCTCTCCAATGAAAGGAGCAACAACATG 1919
Query 1920 GCCGGAAGAGAAGCTTGGAGTAGTAGCAGGTTCGGCTGCAGCAGCGGTTTCAGCAACAGT 1979
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1920 GCCGGAAGAGAAGCTTGGAGTAGTAGCAGGTACGGCTGCAGCAGCGGTTTCAGCTACAGT 1979
Query 1980 CAGCAGCAGATCCAAGTTGAGGCTCTTAAAGAGTGTGTGCCAGAACGTTAATGGCTCGAC 2039
|||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1980 CAGCAGCAGATCTAAGTTGAGGCTCTTAAAAAGTGTGTGCCAGAACGTTCATGGCTCGAC 2039
Query 2040 GCCTCACCTGTGGGGGCTTGTGATTGTGACAGCAACTTGGGACGGTATTATCAGAGTGTT 2099
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||
Sbjct 2040 GCCTCACCTGTGGGGGCTTGTGATTGTGACTGCAACGTGGGACGGTAGTATCAGAGTATT 2099
Query 2100 CCATAACTACGGTTTACCAATTCGAGTCTAAAGACCGAA---GCAGCGCATGTAGAGATT 2156
||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 2100 CCATAACTACGGTTTACCAATTCGAGTCTAAAGACAGAATAAGCAGCGCATGTAGAT-TT 2158
Query 2157 TGAAGAAAAATTGTGGCAGTGTT-AGTGCAGCATTCTTTGATTTTGTTTGGA-GCTCACT 2214
||||| || ||||||||||||| ||||||||||||||| |||||||||||| | |||||
Sbjct 2159 TGAAGGGAA-TTGTGGCAGTGTTTAGTGCAGCATTCTTTCATTTTGTTTGGAAG-TCACT 2216
Query 2215 TAGCCTTA 2222
||||||||
Sbjct 2217 TAGCCTTA 2224
Score = 97.1 bits (52), Expect = 7e-19
Identities = 74/83 (89%), Gaps = 7/83 (8%)
Strand=Plus/Plus
Query 2223 GAACTAAGTGGGTCTCTTTGCATTTGCTTTTAATTGGTACGA---GTATTTGTATAGTG- 2278
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 2249 GAACTAAGTGGGTCTCTTTGCATTTGCTTTTAATTGGTACTATTTGTAATTGTATAGTGT 2308
Query 2279 -A--TCTATTtgtgtgtgtgtgt 2298
| |||||||||||||||||||
Sbjct 2309 GAGATCTATTTGTGTGTGTGTGT 2331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114055638240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5