BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493790
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2329 0.0
> AT5G41950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:16785714-16789514 FORWARD LENGTH=1963
Length=1963
Score = 2329 bits (1261), Expect = 0.0
Identities = 1442/1526 (94%), Gaps = 26/1526 (2%)
Strand=Plus/Plus
Query 179 GCCGGAGGAAGTACAATCGGAGGTAACCGATGCGAAGCCGGAGGAAGTACAATCTGAGGT 238
||||||||||||| || | | ||||||||||||||| |||||||||| ||||||||||||
Sbjct 321 GCCGGAGGAAGTAAAAACTGTGGTAACCGATGCGAAACCGGAGGAAGCACAATCTGAGGT 380
Query 239 AAAGCCGGAGGAAGTACAATCTGTGGTAACCGATGTGAAACCGGAGTTAACCGATGTGGA 298
||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 381 GAAGCCGGAGGAGGTACAATCTGTGGTAACCGATACGAAACCGGATTTAACCGATGTGGA 440
Query 299 TCTGTCGCCGGGAGGATCCGAGGAGATCCCGATCCAGTCGAGGGAGG-TGAATCAGGAAT 357
|||||| ||||||||||| |||||||||||||||| ||||| ||||| |||| ||||||
Sbjct 441 TCTGTCTCCGGGAGGATCTGAGGAGATCCCGATCCGGTCGACGGAGGTTGAA-CAGGAA- 498
Query 358 CTTCTTCCACTGATCAGGAATCTACTTCTGTTCTGAAGAAAGAAGATGATGGGAACAAGA 417
| | | | |||||||||||||||||||||| ||||||||||||||||
Sbjct 499 -----T---C---T-----A-CTACTTCTGTTCTGAAGAAAGATGATGATGGGAACAAGA 541
Query 418 CATTTACCATGAGAGAG-TTGCTTAGCGAATTAAAAAGCGAGGAAGGAGATGGGACTCCT 476
||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||
Sbjct 542 CATTTACCATGAGAGAGCTT-CTTAGTGAATTAAAAAGCGAGGAAGGAGATGGCACTCCT 600
Query 477 CACAGTTCTGCTTCCCCCTTTAGTCGAGAAAGTGCTTCTCAACCAGCGGAGAACAATCCT 536
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CACAGTTCTGCTTCTCCATTTAGTCGAGAAAGTGCTTCTCAACCAGCGGAGAACAATCCT 660
Query 537 GCAATGGATCTGATTAACAGGATCCAAGTTAACGACGAAGAGGGTCGATCTCGCCAGCGT 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 GCAATGGATCTGATTAACAGGATCCAAGTTAACGACGAAGAGGGTCGATCTCGCCAACGT 720
Query 597 GTTCTTGCATTTGCTGCCCGCAAGTATGCAAGTGCGATAGAGAGAAATCCAGATGATCAT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTTCTTGCATTTGCTGCCCGCAAGTATGCAAGTGCGATAGAGAGAAATCCAGATGATCAT 780
Query 657 GATGCATTATACAACTGGGCACTTATTCTCCAGGAAAGTGCTGATAATGTCAGTGCAGAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 781 GATGCATTATACAACTGGGCACTTATTCTCCAGGAAAGTGCTGATAATGTCAGCCCGGAT 840
Query 717 TCTGTTTCACCTTCTAAAGATGATTTGCTTGAGGAAGCTTGTAAGAAGTACGATGAGGCA 776
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 TCTGTTTCACCTTCTAAAGATGATTTGCTGGAGGAAGCTTGTAAGAAGTACGATGAGGCA 900
Query 777 ACCCGTCTCTGCCCGACCCTTTATGATGCTTACTACAACTGGGCTATCGCAATCTCTGAT 836
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 901 ACCCGTCTCTGCCCGACGCTGTATGATGCTTACTACAACTGGGCTATTGCAATCTCTGAT 960
Query 837 AGAGCAAAGATGCGTGGTCGCACAAAGGAGGCTGAAGAACTATGGGAACAGGCGACTAAT 896
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| || ||
Sbjct 961 AGAGCAAAGATACGTGGTCGCACAAAGGAAGCTGAAGAACTATGGGAACAAGCGGCTGAT 1020
Query 897 AACTATGAAAAAGCTGTCCAGCTCAATTGGAACAGTTCCCAGGCATTAAACAACTGGGGA 956
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1021 AACTATGAAAAAGCTGTCCAGCTCAATTGGAACAGTTCCCAGGCGTTAAACAACTGGGGA 1080
Query 957 CTGG-CGCTACAGGAACTCAGTCAAATCGTTCCTGCTAGGGAGAAGGAAAAAGTTGTCAG 1015
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTGGTC-CTACAGGAACTCAGTCAAATCGTTCCTGCTAGGGAGAAGGAAAAAGTTGTCAG 1139
Query 1016 AACTGCCATTAGCAAGTTTCGGGCGGCGATCAGGTTGCAATTTGATTTCCATCGAGCCAT 1075
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 AACTGCCATTAGTAAGTTTCGGGCGGCAATCAGGTTGCAATTTGATTTCCATCGAGCCAT 1199
Query 1076 ATACAACCTTGGAACCGTTCTGTATGGATTAGCAGAAGACACACTTAGAACAGGGGGTTC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1200 ATACAACCTTGGAACCGTTCTGTATGGATTAGCAGAAGACACACTTAGAACTGGGGGTTC 1259
Query 1136 AGGCAACGGCAAAGACATGCCTCCC-GGTGAGTTATACAGCCAATCTGCCATCTACATTG 1194
||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 1260 AGGCAACGGCAAAGACATGCC-CCCTGGTGAGTTATACAGCCAGTCTGCCATCTACATTG 1318
Query 1195 CTGCAGCTCATTCGTTGAAGCCAAGTTACTCGGTTTACAGCAGCGCTTTGAGGCTCGTTC 1254
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1319 CTGCAGCGCATTCATTGAAGCCAAGTTACTCAGTTTACAGCAGCGCTTTGAGGCTTGTTC 1378
Query 1255 GTTCAATGCTACCTCTACCACATCTTAAAGTTGGATATCTAACCGCAGCACCTGTGGGAA 1314
|||| ||||||||||| || ||||||||||||||||||||||| ||| |||||||||| |
Sbjct 1379 GTTCCATGCTACCTCTCCCGCATCTTAAAGTTGGATATCTAACTGCACCACCTGTGGGCA 1438
Query 1315 ACTCACTTGCTCCTCACAGTGATTGGAAACGCACAGAGTTTGAACTCAATCACGAGAGGC 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ACTCACTTGCTCCTCACAGTGATTGGAAACGCACAGAGTTTGAACTCAATCACGAGAGGC 1498
Query 1375 TTCTACAGGTACTGAAACCTGAACCAAGAGAAATGGGACGAAACCTGTCAGGAAAACCAG 1434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1499 TTCTACAGGTACTGAAACCTGAACCAAGAGAAATGGGACGAAACCTGTCAGGAAAAGCAG 1558
Query 1435 AGACAATGAGCACAAATGTGGAGAGGAAGACGGTAAAAGTGAATATTACAGAGATTGTGT 1494
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1559 AGACAATGAGCACAAACGTGGAGAGGAAGACGGTAAAAGTGAACATTACAGAGATTGTAT 1618
Query 1495 CAGTGACGCCTTGTGCTGATCTCACTCTACCTCCCGGTGCTGGTCTCTGCATTGATACCA 1554
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1619 CAGTAACACCTTGTGCTGATCTCACTCTACCTCCTGGTGCTGGTCTCTGCATTGATACCA 1678
Query 1555 TTCATGGCCCAGTCTTCCTGGTTGCAGATTCATGGGAGTCTTTAGATGGATGGCTTGACG 1614
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TTCATGGCCCAGTTTTCTTGGTTGCAGATTCATGGGAGTCTTTAGATGGATGGCTTGACG 1738
Query 1615 CAATTCGTTTGGTTTACACAATTTATGCGAGAGGGAAGAGTGATGTTTTAGCCGGTATTA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CAATTCGTTTGGTTTACACAATTTATGCGAGAGGGAAGAGTGATGTTTTAGCCGGTATTA 1798
Query 1675 TCACCGGTTAATAAATACTTCACTTA 1700
|||||||||||||||||||||| |||
Sbjct 1799 TCACCGGTTAATAAATACTTCATTTA 1824
Score = 425 bits (230), Expect = 6e-118
Identities = 266/284 (94%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 1 TAACATACTGCGATCTTTGTTCAGCTTCTCTAATGGCGGATACTGTTGAAGAGCCTCAAT 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 80 TAACATACTGCGATCTTTTTTCAGCTTCTCTAATGGCGGATACTGTTGAAGAGCCTCAAT 139
Query 61 TGCAAAATGGAGCGGTACCAGGTGAGTCCGAAACCGAGCAAAATCCGACTCCGGAACCAC 120
| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 140 TACAAAATGGAGCGGCACCAGCTGAGTCCGAAACCGAGCAAAATCCGATTCCGGAACCAC 199
Query 121 AACTCCAAACTGAGCCCAAACTTACCGAAGAAATTCCGGAAATAAAAACGGATGCGACGC 180
|||||||||||||||||||||| |||| |||||||||||||||| || ||||| ||||
Sbjct 200 AACTCCAAACTGAGCCCAAACTAACCGGAGAAATTCCGGAAATAGAAGCGGATTTAACGC 259
Query 181 CGGAGGAAGTACAATCGGAGGTAACCGATGCGAAGCCGGAGGAAGTACAATCTGAGGTAA 240
||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 260 CGGAGGAAGTACAATCGGAGGTAACGGATGCAAAGCCAGAGGAAGTACAATCTGAGGTAA 319
Query 241 AGCCGGAGGAAGTACAATCTGTGGTAACCGATGTGAAACCGGAG 284
|||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 320 AGCCGGAGGAAGTAAAAACTGTGGTAACCGATGCGAAACCGGAG 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88252558110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5