BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493792
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41920.1 | Symbols: | GRAS family transcription factor | ch... 2001 0.0
> AT5G41920.1 | Symbols: | GRAS family transcription factor |
chr5:16779749-16781245 FORWARD LENGTH=1497
Length=1497
Score = 2001 bits (1083), Expect = 0.0
Identities = 1341/1458 (92%), Gaps = 47/1458 (3%)
Strand=Plus/Plus
Query 1 TTCACAAACAGCACTTGATTATAACAGTGAATC-TTTGCaaaaaagaaaaaaaaaC-TTT 58
|||||||| ||||||||||||||||| |||||| |||||||||||| | ||||| | |||
Sbjct 17 TTCACAAAGAGCACTTGATTATAACATTGAATCTTTTGCAAAAAAG-ATAAAAATCTTTT 75
Query 59 CAAGAAACTGATCCATCCAAAATACACTATCTTGTCTTCACTCTACAAAATTCCTGTCAT 118
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 76 CAAGAAACTGATCCATCCAAAAT--ACTATCTTGTCTTCACTCTTCAAAATTCCTGTCAT 133
Query 119 TActctctcgaa--c---c-c--tt----tct---c----ttttcga----at-c-tctt 153
|||||||||||| | | | || ||| | ||||| | | | ||||
Sbjct 134 TACTCTCTCGAACCCTTTCTCTTTTCGAATCTCCACTTTTTTTTCTATCTTCTGCTTCTT 193
Query 154 cttcttctctcttcAATGATTCCACTCTCACAAAATCTCCATGACTACAAAACGTATAGA 213
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 194 CTTCTTCTCTCTTCAATGATTCCACTCTCACAAAATCTCCATGACTACAAAACGCATAGA 253
Query 214 CAGAGATTTCCCATCTTCCGACGATCCTTCCGCCGCCGCTAAACGCCGTATCAACGACAT 273
||||||| ||||||||||||||||||||| || ||||||||||||| | ||
Sbjct 254 CAGAGATCTCCCATCTTCCGACGATCCTT---CCTCCGCTAAACGCCG--T-------AT 301
Query 274 CGAATTCCCCGAAGAAACACTCGAAAACGACGGTGCCGCCGCCGCAATCAAACTCCTTAG 333
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 302 CGAATTCCCCGAAGAAACACTCGAAAACGACGGT---GCTGCCGCAATCAAACTCCTTAG 358
Query 334 CTTACTCCTCCAATGCGCTGAATACGTCGCAACTAATCATCTCCGTGAAGCTTCAACACT 393
|||||||||||||||||| |||||||| || ||| |||||||||||||||||||||||||
Sbjct 359 CTTACTCCTCCAATGCGCCGAATACGTAGCTACTGATCATCTCCGTGAAGCTTCAACACT 418
Query 394 CTTATCCGAAATCTCCGAGATATGTTCTCCGTTCGGTTCTTCGCCGGAGCGTGTCGTCGC 453
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 419 TTTATCCGAAATCTCCGAGATATGTTCTCCGTTCGGTTCCTCGCCGGAGCGAGTCGTCGC 478
Query 454 TTACTTCGCACAAGCGCTACAAACGCGCGTGATCAGCTCTTACCTCTCTGGCGCGTGTAC 513
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 479 TTACTTCGCTCAAGCGCTACAAACGCGCGTGATCAGCTCTTACCTCTCCGGCGCGTGTTC 538
Query 514 TCCACTCTCCGAGAAACCATTCACTGTTGTTCAGTCTCAGAAACTCTTCTCCGCCTTGCA 573
||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 TCCCCTCTCCGAGAAACCACTCACTGTTGTTCAGTCTCAGAAAATCTTCTCCGCCTTGCA 598
Query 574 GACTTTTAACTCCGTTAGTCCTCTGATCAAATTCTCACATTTCACGGCGAATCAAGCGAT 633
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 599 GACTTATAACTCCGTTAGTCCTCTGATCAAATTCTCACATTTCACGGCGAATCAAGCCAT 658
Query 634 TTTTCAGGCGCTTGACGGTGAAGATTCCGTTCATATCATCGATCTCGATGTTATGCAAGG 693
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTTTCAGGCGCTTGACGGAGAAGATTCCGTTCATATCATCGATCTCGATGTTATGCAAGG 718
Query 694 TCTTCAATGGCCGGCTCTGTTTCACATCCTCGCTTCACGTCCTCGAAAACTCCGATCAAT 753
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCTTCAATGGCCGGCTCTATTTCACATCCTCGCTTCACGTCCTCGAAAACTCCGATCAAT 778
Query 754 TCGAATCACCGGATTCGGTTCCTCCTCCGATCTCCTCGCTTCCACTGGCCGGAGACTCGC 813
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 779 TCGAATCACCGGATTTGGTTCCTCCTCCGATCTACTCGCTTCAACTGGCCGGAGACTCGC 838
Query 814 CGATTTCGCATCATCGTTAAACCTTCCGTTCGAATTCCATCCAATTGAAGGAAAAATCGG 873
|||||||||||||||||||||||| || |||||||| |||||||||||||| | ||||||
Sbjct 839 CGATTTCGCATCATCGTTAAACCTCCCTTTCGAATTTCATCCAATTGAAGGCATAATCGG 898
Query 874 AAACCTAATCGATCCGAGTCAACTCGGGACGAGACAAGGGGAAGCTGTGGTGGTTCACTG 933
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 899 AAACCTAATCGATCCGAGCCAACTCGCAACGAGACAAGGAGAAGCTGTGGTGGTTCATTG 958
Query 934 GATGCAACACCGGTTATACGACGTCACCGGGAACGATCTCGAGACGTTGGAGATTCTACG 993
|||||| ||||||||||| || || || |||||| |||||||||||||||||||||||||
Sbjct 959 GATGCAGCACCGGTTATATGATGTTACAGGGAACAATCTCGAGACGTTGGAGATTCTACG 1018
Query 994 GAGGTTGAAACCGAATCTGATTACGGTGGTGGAGCAAGAATTGAGCTACGACGATGGAGG 1053
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAGGCTGAAACCGAATCTGATCACGGTGGTGGAGCAAGAATTGAGCTACGACGATGGAGG 1078
Query 1054 AAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCATTATTATAGCGCGTTGTTCGACGCGCT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1079 AAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCATTATTATAGCGCGTTGTTTGACGCGCT 1138
Query 1114 TGGAGATGGATTGGGTGAGGAGAGTGGAGAGAGATTCACGGTGGAGCAGATTGTTTTGGC 1173
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 AGGAGATGGATTGGGTGAAGAGAGTGGTGAGAGATTCACGGTGGAGCAGATTGTTTTGGG 1198
Query 1174 GACGGAGATAAGGAATATTGTGGCGCATggaggaaggagga-ggaggaggaTGAAGTGGA 1232
|||||||||||| || ||||||||||| |||||| ||| || ||| ||| ||||||||||
Sbjct 1199 GACGGAGATAAGAAACATTGTGGCGCACGGAGGA-GGAAGAAGGAAGAGAATGAAGTGGA 1257
Query 1233 AAGAGGAGCTGAATCGGGTCGGGTTTAGACCCGTTTCGCTTCGGGGTAACCCGGCGATGC 1292
|||| || |||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1258 AAGAAGAACTGAGCCGGGTCGGGTTTAGACCTGTTTCGCTTCGGGGTAACCCGGCGACAC 1317
Query 1293 AAGCGGGTTTGTTGTTGGGTATGTTACCGAGGAATGGATATACTTTGGTTGAAGAGAATG 1352
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 AAGCGGGTTTATTGTTGGGTATGTTACCGTGGAATGGATATACTTTGGTTGAAGAGAATG 1377
Query 1353 GAACCCTCCGTCTTGGTTGGAAGGATCTCTCGCTTTTGACTGCCTCTGCCTGGAAATCTC 1412
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAACCCTCCGTCTTGGCTGGAAGGATCTCTCGCTTTTGACTGCCTCTGCCTGGAAATCTC 1437
Query 1413 AGCCGTTCGATTGATTTT 1430
||||||||||||||||||
Sbjct 1438 AGCCGTTCGATTGATTTT 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5