BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493793
Length=646
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41910.1 | Symbols: MED10A | Mediator complex, subunit Med10... 894 0.0
AT1G26665.2 | Symbols: | Mediator complex, subunit Med10 | chr... 586 9e-167
> AT5G41910.1 | Symbols: MED10A | Mediator complex, subunit Med10
| chr5:16778055-16779274 REVERSE LENGTH=723
Length=723
Score = 894 bits (484), Expect = 0.0
Identities = 567/607 (93%), Gaps = 6/607 (1%)
Strand=Plus/Plus
Query 43 GAAAGCAATGAAATTGCAACCGTAGACGATTCAAAGGAGAATCTGAACCAAGTCATAAAC 102
|||| ||||| |||||||||||| ||||||||||| ||||| ||||||||| | ||||||
Sbjct 118 GAAATCAATGCAATTGCAACCGTCGACGATTCAAATGAGAAGCTGAACCAAATTATAAAC 177
Query 103 TCGAATCAGAAAACTTTAGTACTACTTCATCAATTGAAACTCACCGTCTCTTCTTTCACT 162
||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 178 TCGAATCAGAAAATTTTAGAACTCCTTCATCAATTAAAACTCACCGTCTCTTCTTTCAC- 236
Query 163 TCC-GCTTCTCAGCTTGATCTCCTCCAACGCCTCAATTCTCTTGTGATGGAGCTTGATAA 221
|| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ACCTGCTTCTCAGCTTCACCTCCTCCAACGCCTCAATTCTCTTGTGATGGAGCTTGATAA 296
Query 222 TATGGCTAAGTTGTCTGATAAATGCAACATTCAAGTCCCCATGGAGGTTCTTAACTTGAT 281
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 TATGGCTAAGTTGTCTGATAAATGCAACATTCAAGTCCCCATTGAGGTTCTTAACTTGAT 356
Query 282 TGATGATGGGAAGAACCCAGATGAGTTTACAAA-GAATGTTCTTAATAATAGCTGCATTG 340
||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||||
Sbjct 357 TGATGATGGGAAGAACCCAGATGAGTTTACAAAAGA-TGTTCTTAATAAGAACTGCATTG 415
Query 341 CTAGAAATCAAGTTACAAAGGGCAAGACCGATGCTTTTAAGGGTTTGAGAAAACATCTTT 400
||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 416 CTAAAAATCAAGTTACAAAGGGAAAGAGTGATGCTTTTAAGGGTTTGAGAAAACATCTCT 475
Query 401 TGGAGGAGCTTGAACAGACTTTTCCTGATGAAGTCGATACG-TATAGAGAAATCCGTGCT 459
||||||||||||||||| |||||||||||||||||||| || |||||||| || ||||||
Sbjct 476 TGGAGGAGCTTGAACAGGCTTTTCCTGATGAAGTCGAT-CGGTATAGAGACATACGTGCT 534
Query 460 AGTTATGCCGCTGAAGCAAAACGGTTGGCCCAATCGCAAAGTGTGTTACCAAATGGGGAT 519
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 535 AGTTATGCTGCTGAAGCAAAACGGTTGGCTCAAACGCAAAGTGTGTTACCAAATGGGGAT 594
Query 520 CCTAAGGTCAAGAGTGAGCTATAAGAGCTATGAATCTTGCCTTTTAGAATAAAATTTTCA 579
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GCTAAGGTCAAGAGTGAGCTATAAGAGCTATGAATCTTGCCTTTTAGAATAAAATTTTCA 654
Query 580 TGTAGATCAACGAGAATGTAAACGAACAAGCCTTCTTGGAATTTCTATAATATCCGTTGG 639
||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 655 AGTAGATCAATGAGGATGTAAACGAACAAGCCTTCTTGGAATTTCTATAACATCCGTTGG 714
Query 640 ttttttt 646
|| ||||
Sbjct 715 TTCTTTT 721
> AT1G26665.2 | Symbols: | Mediator complex, subunit Med10 | chr1:9214174-9215552
FORWARD LENGTH=794
Length=794
Score = 586 bits (317), Expect = 9e-167
Identities = 428/481 (89%), Gaps = 9/481 (2%)
Strand=Plus/Plus
Query 70 GATTCAAAGGAGAATCTGAACCAAGTCATAAACTCGAATCAGAAAACTTTAGTACTACTT 129
||||||||||||||||| ||||||||||||||| | | |||||||||||| | | |||
Sbjct 198 GATTCAAAGGAGAATCTTTCCCAAGTCATAAACTCTATTGAGAAAACTTTAGGAGTCCTT 257
Query 130 CATCAATTGA-AACTCACCGTCTCTTCTTTCACTTCCGCTTCTCAGCTTGATCTCCTCCA 188
||||| || | | || |||||| |||||||||| |||| ||||| || ||||||||||
Sbjct 258 CATCAGTT-ACACCTTACCGTCACTTCTTTCACACCCGCGTCTCAACTCCATCTCCTCCA 316
Query 189 ACGCCTCAATTCTCTTGTGATGGAGCTTGATAATATGGCTAAGTTGTCTGATAAATGCAA 248
||||| || ||||||||||||||||| ||||| ||| ||||||||||||| ||||||||
Sbjct 317 GCGCCTTAACTCTCTTGTGATGGAGCTAGATAACATGACTAAGTTGTCTGAGAAATGCAA 376
Query 249 CATTCAAGTCCCCATGGAGGTTCTTAACTTGATTGATGATGGGAAGAACCCAGATGAGTT 308
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 377 CATTCAAATCCCCATGGAGGTTCTTAACTTGATTGATGATGGGAAGAACCCGGATGAGTT 436
Query 309 TAC-AAAGAATGTTCTTAATAATAGCTGCATTGCTAGAAATCAAGTTACAAAGGGCAAGA 367
||| ||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct 437 TACGAAAGA-TGTTCTTAATA---GCTGCATAGCTAGAAATCAAGTTACTAAGGGCAAGA 492
Query 368 CCGATGCTTTTAAGGGTTTGAGAAAACATCTTTTGGAGGAGCTTGAACAGACTTTTCCTG 427
| ||||||||||||| ||||||||||||| || |||||||||||||||||| ||| ||||
Sbjct 493 CTGATGCTTTTAAGGATTTGAGAAAACATATTCTGGAGGAGCTTGAACAGAATTTCCCTG 552
Query 428 ATGAAGTCGATACGTATAGAGAAATCCGTGCTAGTTATGCCGCTG-AAGCAAAACGGTTG 486
|||||||||||| ||||||||||||||||||||||| ||| |||| || | |||||||||
Sbjct 553 ATGAAGTCGATATGTATAGAGAAATCCGTGCTAGTTCTGCTGCTGTAA-CGAAACGGTTG 611
Query 487 GCCCAATCGCAAAGTGTGTTACCAAATGGGGATCCTAAGGTCAAGAGTGAGCTATAAGAG 546
|| |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 612 GCGCAATCGCAAAGTGTGTTACCAAATGGGGATGCAAAGGTCAAGAATGAGCTATAAGAG 671
Query 547 C 547
|
Sbjct 672 C 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31195405287
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5