BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493795
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41890.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1602 0.0
> AT5G41890.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:16764211-16766680 REVERSE LENGTH=1209
Length=1209
Score = 1602 bits (867), Expect = 0.0
Identities = 994/1056 (94%), Gaps = 6/1056 (1%)
Strand=Plus/Plus
Query 34 GCTGCTCAATCTTTCACAAACTTCATATTTGGAGACTCATTGGTAGATGTTGGAAACAAC 93
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 GCTGCTCAATCGTTCACAAACTTCATATTTGGAGACTCATTGGTAGATGTTGGAAACAAC 135
Query 94 AATTATATCTTCACATTGTCGAAAGCCGATTCTTCGCCTTATGGCATCGATTTTGGACCT 153
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 136 AACTATATCTTCACATTGTCAAAAGCTGATTCTTCGCCTTATGGCATCGATTTTGCACCT 195
Query 154 TCCAATGGCCAACCCACGGGAAGATTCACTAATGGTCGAACCATTTCTGATATCGTGGGT 213
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 196 TCCAACGGCCAACCCACGGGAAGATTCACTAATGGTCGAACCATTTCCGATATTGTGGGT 255
Query 214 GAAGCCTTAGGAGCAAAATCAGCACCACCTCCATATCTTGAACCAAACTCTGAGGCTAAC 273
||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 256 GAAGCCTTAGGAGCAAAATCACCACCACCACCATATCTTGAACCAAACACTGAGGCTAAC 315
Query 274 ACATTTCTCAATGGAATCAACTATGCTTCTGGTGCGGCTGGAATCTTGGACGACACTGGA 333
||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 316 ACAATTCGCAATGGAATCAACTATGCTTCTGGTGCTGCTGGAATCTTGGACGACACTGGA 375
Query 334 CttttttttATCGGGAGAGTTCCGCTAAGAGAACAAGTGAGTTATTTTGAGAAGAGTAGA 393
||| | || |||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 376 CTTCTGTTCATCGGGCGAGTTCCGCTGAGAGAACAAGTGAGTAATTTTGAGAAGAGTAGA 435
Query 394 GATTACATGGTAAGAGTGATTGGTGAAAATGGTACAAAAGAGATGTTGAAGAAGGCAATG 453
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 436 GAATATATGGTAAGAGTGATTGGTGAAAATGGTACAAAAGAGATGTTGAAGAATGCAATG 495
Query 454 TTCACAATGACAATTGGTTCAAATGATATATTGAATAATATTCAACCATCAATACCTTTT 513
|||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 496 TTCACAATCACAATTGGATCAAATGATATTTTGAATTATATTCAACCATCAATACCTTTC 555
Query 514 TTCTCTCAAGACAAACTCCCCATTGATGTCCTACAAGATTCCATGGTCCTCCATTTAACC 573
|||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 556 TTCTCTCAAGACAAGCTCCCCACTGATGTCCTACAAGATTCTATGGTCCTCCATTTAACC 615
Query 574 ACACATCTGAAGCGATTGCATCAGCTAGGAGCTAGGAAGTTCGTGGTGGTTGG-GATAGG 632
|||||||| |||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 616 ACACATCTTAAGCGATTGCATCAGCTAGGAGGTAGGAAGTTCGTGGTGGTTGGAG-TAGG 674
Query 633 GCCACTTGGTTGCATACCGTTTGCTCGTGCCTTGAATTTAATACCAGCCGGAAAATGCTC 692
|||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 675 GCCACTCGGTTGCATACCCTTTGCTCGAGCGTTGAATTTAATACCAGCCGGAAAATGCTC 734
Query 693 CGAACAAGTCAACCAAATAGTCCGAGGTTATAACATGAAGCTTAGACACTCTCTTAAGAC 752
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 735 CGAACAAGTCAACCAAGTAGTCCGAGGTTATAACATGAAGCTTATACACTCTCTTAAGAC 794
Query 753 ACTT-AACAATGAGTTAAGATCTGAAGATTACAACGCTACATTTGTCTACGCCAACTCTT 811
| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 795 A-TTGAACAATGAGTTAAGATCCGAAGATTACAACACTACATTTGTCTACGCCAACTCTT 853
Query 812 ACGACCTCTTCTTGAAACTGGTTTTAAACTATCGAC-AGTTTGGTTTGGAGAACGCAGAC 870
||||||| ||||||||||| ||||| ||||||| || | ||||| ||| |||||||||||
Sbjct 854 ACGACCTATTCTTGAAACTAGTTTTGAACTATCAACTA-TTTGGCTTGAAGAACGCAGAC 912
Query 871 AAGCCGTGTTGTGGCGGCTACTTTCCGCCGTTTACATGTTTTAAGGGACCGAACCAGAAC 930
|||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||
Sbjct 913 AAGCCGTGTTGTGGCGGCTACTTTCCACCGTTTGCATGCTTTAAGGGACCTAACCAGAAC 972
Query 931 TCAAGCCAAGCGGCTTGTGAGGACCGGTCCAAGTTTGTCTTCTGGGACGCGTATCACCCA 990
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 973 TCAAGCCAAGCAGCTTGTGAGGACAGGTCCAAGTTTGTCTTCTGGGACGCGTATCACCCA 1032
Query 991 ACCGAAGCTGCCAATCTCATTGTTGCCAAAGCACTTCTTGATGGTGACCAAACTGTGGCT 1050
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 ACCGAAGCTGCAAATCTCATTGTTGCCAAAGCACTTCTTGATGGTGACCAAACTGTGGCT 1092
Query 1051 ACACCTTTCAACATTCGCTATCTTAACGATCTTTAA 1086
|| ||||||||||| |||||||||||||||||||||
Sbjct 1093 ACCCCTTTCAACATCCGCTATCTTAACGATCTTTAA 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5