BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493797
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41870.1 | Symbols: | Pectin lyase-like superfamily protein... 2141 0.0
> AT5G41870.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:16758709-16760576 REVERSE LENGTH=1544
Length=1544
Score = 2141 bits (1159), Expect = 0.0
Identities = 1322/1402 (94%), Gaps = 6/1402 (0%)
Strand=Plus/Plus
Query 56 TCTCCGATATGACGCTTTCTCGAGCTCCGATCTCTGTTTTCGTACTCTTCTTGCTCTCCA 115
|||| ||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 79 TCTCAGATATGAAGATTTCTCAAGCTCCGATCTCTGTTTTCGTACTCTTCTTGCTCTCCA 138
Query 116 CTGTTTTGCCTCACCATCTCTCGCTCGGAGCTCCGATTACATGCTCTGGTATAGTTCCGA 175
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 139 CTGTTTTGCCTCACCATCTCTCACTGGGAGCTCCGATTACATGCTCTGGTATAGTTCCAA 198
Query 176 TGAAACACAGGACCGAGATGCTATCGATTTTTGATTTTGGAGCTGTCGGTGACGGAAAGA 235
|||||||||| | |||||||||||| |||| ||||||||||||||||||||||| ||||
Sbjct 199 TGAAACACAGAAACGAGATGCTATCAATTTCGGATTTTGGAGCTGTCGGTGACGGCAAGA 258
Query 236 CCTTAAACACCAACGCATTCAATACAGCGATTGATCGGATACGAAACTCCAACAACAGTA 295
|||| |||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 259 CCTTGAACACCAAAGCATTCAATTCAGCTATTGATCGGATACGAAACTCCAATAACAGTA 318
Query 296 GCCAAGGAACGCTTCTTCATGTGCCTCGTGGTGTCTATTTGACTCATAGCTTCAATCTTA 355
| ||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||
Sbjct 319 ACGAAGGAACTCTTCTTTATGTGCCTCGTGGTGTGTATTTGACTCAAAGCTTCAATCTTA 378
Query 356 CTAGTCATATGACTCTT-TACCTCGCCGATGGTGCGGTTATTAAAGCCGTTCAGGATACG 414
| ||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 379 CGAGTCACATGACT-TTATACCTCGCCGATGGTGCTGTTATTAAAGCCGTTCAGGATACG 437
Query 415 GAGAAATGGCCTTTGACCGATCCTTTGCCGTCTTATGGAAGAGGACGGGAGCGCCCTGGA 474
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 438 GAGAAATGGCCTTTGACCGATCCTTTGCCGTCTTATGGAAGAGGACGGGAGCATCCTGGA 497
Query 475 CGAAGATATATCAGCTTTATTCATGGAGATGGACTCAATGACGTTGTTATTACAGGCAGA 534
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 498 CGAAGATATATCAGCTTTATTCACGGAGACGGACTCAACGACGTTGTTATTACAGGCAGA 557
Query 535 AATGGGACGATTGATGGCCAAGGAGAACCTTGGTGGAACATGTGGAGACATGGAACTCTA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AATGGGACGATTGATGGCCAAGGAGAACCTTGGTGGAACATGTGGAGACATGGAACTCTA 617
Query 595 AAGTTTACTAGACCGGGTCTCATCGAATTCAAGAACTCAACAAACATCGTCGTCTCTCAC 654
|||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 618 AAGTTTACCAGACCTGGTCTCATCGAATTCAACAACTCAACAAACATCCTCGTCTCTCAT 677
Query 655 GTTGTTCTTCAGAACTCCGCTTTCTGGACACTTCATCCTGTTTATTGCAGTGATGTTGTG 714
|||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 678 GTTGTTCTTCAGAACTCCCCTTTCTGGACACTTCATCCGGTTTATTGCAGTAATGTTGTT 737
Query 715 GTTCATCACGTTACCATTCTCGCTCCAACTGATTCCTTCAACACCGATGGAATTGATCCA 774
|||||||| ||||| || ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 738 GTTCATCATGTTACTATCCTCGCTCCAACTGATTCGTACAACACCGATGGAATTGATCCA 797
Query 775 GATTCAAGCTCTAACGTCTGTATAGAAGATTCCTACATATCTACTGGTGATGACCTTGTT 834
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 798 GATTCAAGCTCTAACGTCTGTATAGAAGACTCCTACATATCTACTGGTGACGACCTTGTT 857
Query 835 GCGGTAAAAAGCGGTTGGGATGAGTATGGCATTGCCTACAACCGTCCAAGCCGTGACATC 894
||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 858 GCGGTGAAGAGCGGTTGGGACGAGTATGGCATTGCATACAACCGTCCAAGCCGTGACATC 917
Query 895 ACCATCCGCCGCATCACTGGATCTTCCCCTTTTGCTGGAATAGCCATCGGAAGCGAAACC 954
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 918 ACCATCCGCCGCATCACTGGATCTTCCCCATTTGCTGGAATAGCCATCGGAAGCGAAACT 977
Query 955 TCTGGCGGAATCCAAAATGTAACAGTTGAAAACATCACTCTATACAATTCTGGTATCGGC 1014
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 978 TCTGGCGGAATCCAAAATGTAACAGTTGAAAACATCACTCTCTACAATTCTGGTATCGGC 1037
Query 1015 ATCCACATCAAGACAAACATTGGCCGAGGAGGAAGCATCCAAGGGATAACAATCTCCGGG 1074
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1038 ATCCACATCAAGACAAACATTGGCCGAGGAGGAAGCATACAGGGGATAACAATCTCCGGG 1097
Query 1075 GTTTACCTGGAAAAAGTCCGGACCGGGATTAAGATCTCTGGCGACACCGGAGATCACCCA 1134
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1098 GTTTACCTAGAAAAAGTCCGGACCGGGATTAAGATCTCTGGCGACACCGGAGATCATCCA 1157
Query 1135 GACGATAAATTCAACACATCCGCTCTTCCCATAGTAAGAGGCATAACGATCAAGAACGTA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GACGATAAATTCAACACATCCGCTCTTCCCATAGTAAGAGGCATAACGATCAAGAACGTA 1217
Query 1195 TGGGGAATCAAAGTCGAGCGTGCTGGTATGGTTCAGGGATTAAAAGATTCACCTTTCACT 1254
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1218 TGGGGCATCAAAGTCGAGCGTGCTGGCATGGTTCAGGGATTAAAAGATTCACCTTTCACC 1277
Query 1255 AATCTCTGCTTCTCCAATGTTACACTCACCGGAACAAAAAG-TACTCCAATATGGAAATG 1313
|||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 1278 AATCTCTGCTTCTCCAATGTTACACTGACCGGAACAAAAAGGT-CTCCAATATGGAAATG 1336
Query 1314 CTCAGATGTCGTAGGCGCCGCCTC-CAAGGTCAACCCCACGCCTTGCCCTGAGCTAACCA 1372
||||||||||||||| ||||| | ||||||||||||||| ||||||||||| |||| |
Sbjct 1337 CTCAGATGTCGTAGGAGCCGC-TGACAAGGTCAACCCCACACCTTGCCCTGAACTAAGCG 1395
Query 1373 CAACCACACAACAAGGCGGTTCCTGCGAAAACCAATCCTAATACTCCAAAGATAAGAGAC 1432
|||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 1396 CAACCACACAACAAGGTGGTTCCTGTGAAAACCAATCCTAATTCTCCAAAGCTAAGAGAC 1455
Query 1433 TACATGTAGATTAACGTAAGTT 1454
|||||||||||||| |||||||
Sbjct 1456 TACATGTAGATTAATGTAAGTT 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71686378260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5