BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493799
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41850.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1236 0.0
AT5G41860.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 243 3e-63
> AT5G41850.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:16756698-16758220 REVERSE LENGTH=927
Length=927
Score = 1236 bits (669), Expect = 0.0
Identities = 865/952 (91%), Gaps = 44/952 (5%)
Strand=Plus/Plus
Query 1 TTGACGAAATTCACCGGCACTGTGACCTCATCGGATCCGGAAAGG-GTGGGATTTGTGGA 59
|||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 2 TTGACGAAATTCACCGGCACTGTGACCTCATCGGATTCGGAAAGGCTTGGG-TTTGTGGA 60
Query 60 ATCTGGGTCAGGTTCGGCTGATGAA---GTGGTAAAGCTTTCGTCGATGATGTCATTTTC 116
|||||| || ||||||||||||||| ||||| | ||||| |||||||||||||||| |
Sbjct 61 ATCTGGATCGGGTTCGGCTGATGAAGTGGTGGTTAGGCTTTTGTCGATGATGTCATTTCC 120
Query 117 CGGC-TTGGAAGAAGCGACGGAGAGAGCCAACGTGAGAAACAAAAGAACGGTGACGGTAA 175
|||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 121 CGGCGTT-GAAGAAGCGACGGAGAGAGCCAACGT--G-AACAAAAGAACGGTGACGGTAA 176
Query 176 CGGTAACGGT----G-AGC-------GAGGCCATTGTTGCGACTTGTGAAGAAGGAAATC 223
|||||||||| | ||| |||||||||||| ||| |||||||||||||
Sbjct 177 CGGTAACGGTAACGGTAGCGGTGGGGGAGGCCATTGTT-----TTGGGAAGAAGGAAATC 231
Query 224 TGAATTGTTAAAGGTTCCTCTATGGCTTCACGGAGGAAAAGAAGAAAGGAGAATGAAGCA 283
|||||||| ||||||| ||| |||||||||||||||||||||||||||| |||| | |
Sbjct 232 TGAATTGTCAAAGGTTTCTCGATGGCTTCACGGAGGAAAAGAAGAAAGGTGAAT---G-A 287
Query 284 TCATGTACTGATAAACAAGAGATTGTATGTTCGCCGGTCGTCGTATTCGCTCACGGTGCC 343
| | | || | ||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 288 --A-G-A---AT---C-AGAGATTCCATGTTCGCCGGTCGTTATATTCGCGCACGGTGCC 336
Query 344 GGTGCTCCCTCTTCTTCCGACTGGATGATTAGATGGAAAGAAATGTTAAAGAAGACATTA 403
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 337 GGTGCTCCCTCTTCTTCCGACTGGATGATTAGATGGAAGGAAATGTTAAAGAAGACATTA 396
Query 404 GAAGCTGTTGAAGTGGTCACATTTGACTATCCTTATATTGCTGATGGGAAAAGAAGAGTT 463
|||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||
Sbjct 397 GAAGCTGTTGAAGTGGTCACATTTGACTATCCTTATCTTGCTGACGGGAAAAAAAGAGTA 456
Query 464 GCTCCGAAAGCGGAGAAATTGATTGAGTTTCATTTGGATGTTGTTAAAGAAACTGCTGCT 523
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 457 GCTCCGAAAGCGGAGAAATTGATAGAGTTTCATTTGAATGTTGTTAAAGAAACTGCTGCT 516
Query 524 AAATTCCCTGGTCATCCTTTGATATTAGCTGGCAAATCTATGGGTTCTAGAGTAAGCTGT 583
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 517 AAATTCCCTGGTCATCCTTTGATATTAGTTGGCAAATCAATGGGTTCTAGAGTAAGCTGT 576
Query 584 ATGGTTTCAGCTGTGAATGAAGATGTTACAGTTTCAGCTGTGATATGTTTAGGATATCCA 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 ATGGTTTCAGCTGTGAATGAAGATGTTACAGTTTCAGCTGTGATATGTTTAGGATATCCA 636
Query 644 CTTAAGGGCGCGAAAGGTGTGATTAGAGACGAGACGT-TGCTGGAAATGGGAGTCCCAGT 702
||||||||||||||||||| ||| ||||||||||| | | ||||||||||||||||| ||
Sbjct 637 CTTAAGGGCGCGAAAGGTGCGATAAGAGACGAGAC-TCTACTGGAAATGGGAGTCCCTGT 695
Query 703 GATGTTTGTGCAGGGTAGCAAAGATCCGATGTGTCCTCTGGATAAGCTAGAAGCTGTTTG 762
||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 696 GATGTTTGTGCAGGGAAGCAAAGATCCGATGTGTCCTCTGAATAAGCTTGAAGCTGTTTG 755
Query 763 TAACAAAATGAAAGGTGTGACTGAGGTTCATGTGATTGATGGTGGAGATCACTCCCTCAA 822
||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 756 TAATAAAATGAAAGCTGTGACTGAGGTTCATGTGATTGATGGTGGAGATCACTCCTTCAA 815
Query 823 GATTGGGAAGAAACGCCTTGAAACAAAGGAGTTAACACAAGATGAAGTCGAAGATGTCGC 882
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 816 GATTGGGAAGAAACACCTTGAAACAAAGGAGTTAACACAAGAGGAAGTCGAAGATGTCGC 875
Query 883 TCTCAAAGCAATATCAGCTTTTGTCTCCAAATCTCTTGCTCAAAGCTCATAA 934
| | ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 876 TATGAAAGCAATAGCCGCTTTTGTCTCCAAATCTCTTGCTCAAAGCTCATAA 927
> AT5G41860.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:16757951-16758718
FORWARD LENGTH=768
Length=768
Score = 243 bits (131), Expect = 3e-63
Identities = 172/190 (91%), Gaps = 10/190 (5%)
Strand=Plus/Minus
Query 1 TTGACGAAATTCACCGGCACTGTGACCTCATCGGATCCGGAAAGGGT-GGGATTTGTGGA 59
|||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||
Sbjct 269 TTGACGAAATTCACCGGCACTGTGACCTCATCGGATTCGGAAAGGCTTGGG-TTTGTGGA 211
Query 60 ATCTGGGTCAGGTTCGGCTGATGAAGTGGTAA--AG-CTTTCGTCGATGATGTCATTTTC 116
|||||| || |||||||||||||||||||| || |||| |||||||||||||||| |
Sbjct 210 ATCTGGATCGGGTTCGGCTGATGAAGTGGTGGTTAGGCTTTTGTCGATGATGTCATTTCC 151
Query 117 CGGC-TTGGAAGAAGCGACGGAGAGAGCCAACGTGAGAAACAAAAGAACGGTGACGGTAA 175
|||| ||| ||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 150 CGGCGTTG-AAGAAGCGACGGAGAGAGCCAACGTGA-A--CAAAAGAACGGTGACGGTAA 95
Query 176 CGGTAACGGT 185
||||||||||
Sbjct 94 CGGTAACGGT 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5