BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493802
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41820.1 | Symbols: RGTA2, ATRGTA2 | RAB geranylgeranyl tran... 1652 0.0
AT4G24490.1 | Symbols: RGTA1, ATRGTA1 | RAB geranylgeranyl tran... 830 0.0
> AT5G41820.1 | Symbols: RGTA2, ATRGTA2 | RAB geranylgeranyl transferase
alpha subunit 2 | chr5:16740804-16743433 FORWARD LENGTH=2064
Length=2064
Score = 1652 bits (894), Expect = 0.0
Identities = 1134/1243 (91%), Gaps = 44/1243 (4%)
Strand=Plus/Plus
Query 805 ACTACTTTCTGTTCCGAGTCTGGTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCGTC 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ACTACTTTCTGTTCCGAGTCTGGTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCGTA 906
Query 865 AGTGGAGTTAGCTCGTCTACTGTTACTATT-GATTCTGAACTCAAAGCCAATGAGGATCT 923
|||||||| |||||||| |||||||||||| || |||||||| ||| | || ||
Sbjct 907 AGTGGAGTAAGCTCGTCAACTGTTACTATTGGA-TCTGAACT------CAA--A-GACCT 956
Query 924 TGTTTGGGAACCAGTTTCGGATAATAAGAACTCTCAAGTGGACTCTTGTGTATGGGTTGC 983
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 957 TGTTTGGGAACCAGTTTCGGATAAGAAAAACTCTCAAGTGGACTCTTGTGTTTGGGTTGC 1016
Query 984 TCATCTGAAATTTGACAGTAGAGGACCTTGCTTTAGTCGCAAGGAAAACAAAGTCAAGGT 1043
|| ||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 1017 TCGTCTGAAATTTGACTGTAGAGAACCTTGCTTTAGTCGTAAGGAAACCAAAGTCAAGGT 1076
Query 1044 CAGCCTTGGAGGAATTGTTTCTTCCATGGGATGTAACTTGAGCACTCCTTATGAGTTTGT 1103
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1077 CAGCCTTGGAGGAATTGTTTCTTCCATGGGATGTAACTTGACCGCTCCTTATGAGTTTGT 1136
Query 1104 ATTTACA----GTA--C-TGCACACTGTTG--G-AGAGTCGTCACAACAAG---GCATTG 1150
||||||| ||| | || ||||||| | | ||||| ||||||||||| ||||||
Sbjct 1137 ATTTACACTGCGTATTCATG-ACACTGTCGAAGTAGAGTTGTCACAACAAGAAAGCATTG 1195
Query 1151 TTTCATGGACGGATGGTTTTAACAATTGGGATG---ATGCACAGTCGAAGGATTTGAATT 1207
|||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||
Sbjct 1196 TTTCATGGACGGATGGTTTTGACAATTGGGATGATAATGCACTGTCGAATGATTTGAATT 1255
Query 1208 CTTTTATCGCCTTAAACGCTGATGCGGGTTTTGAGTGGCGTAAGGAAGCTATAAAGATAG 1267
|| ||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1256 CTCTTACCGCCTTAAACGCTGATACGGGTTTTGAGTGGCGTAAGAAAGCTATAAAGATAG 1315
Query 1268 AGATTGATCATCTTCGTAATTTGCCTGACAGCAAATTTGGAAAGCTCATTCTTGCAAGGC 1327
||||||| | | |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1316 AGATTGAACTTTTTCGTACTTTGCCTGACAGCAAAATTGGAAAGCTCATTCTTGCAAGGC 1375
Query 1328 TTTTGATGGCTGAGGAAACTATGATCTCGGATGATGCTGTTAAAGGTTTCCATTATACAG 1387
|||||||||||||||||||||||||||| | ||| | | | ||||||||| ||
Sbjct 1376 TTTTGATGGCTGAGGAAACTATGATCTC--A-AATG--G-T----G--TCCATTATAAAG 1423
Query 1388 AAATCCTCCAGCTCTATAACGATCTCATTGCCCTTGATTCCTGGCATGCCCAGTACTACA 1447
|||||||||| || ||||||||||| || || |||||||| |||||| |||||||||||
Sbjct 1424 AAATCCTCCAACTGTATAACGATCTAATGGCTCTTGATTCTTGGCATAACCAGTACTACA 1483
Query 1448 AGGATGAGCACAGTGTAGCTCTTCTCCACAAGGTGACTTCAAGCACTGAATCCATGTTCA 1507
||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 1484 AGGATGAGCACAGCGTAGCTCTAATCCACAAGGTGACTTCAAGAACTGAATCCATGTCCA 1543
Query 1508 GACACCTCTTTCGGTACAGGAATATGAACAATATTGTATGTCTT-AGGCTCAATAACTTA 1566
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 1544 GACACCTCTTTCGGTACAGGAATATGAACAATATTATATGT-TTAAGGCTCAATAACTTA 1602
Query 1567 ACACTATCTCGGATAGCCGCGGTTGAGAAGTTGCTATTTGTTCAAATGTTAGATCTCAG- 1625
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1603 ACACTATCTCGGATAGCCGCGGTCGAGAAGTTGCTATTTGTCCAAATGTTAGATCTCAGT 1662
Query 1626 CAACAATGAGCTTCATTCAGCTGAAGGATTGGAGGCGATGCAGCTTCTCTGTTGTCTAAA 1685
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1663 C-ACAATGAGCTTCATTCAGCTGAAGGATTGGAGGCGATGCAGCTTCTCTGTTGCCTAAA 1721
Query 1686 TCTGAGTCACAACAGAATCAGGAGCTTTTCAGCACTTGACTCTCTAAGACATCTGAAGCA 1745
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 1722 TCTGAGTCACAACAGAATCAGGAGCTTTTCAGCGCTTGACTCTTTAAGACATCTTAAGCA 1781
Query 1746 GCTTAGAGTGTTGGATGTTTCACATAACCTCATCGGCGGGGAGCACCCAGTGGACACAAC 1805
||||||||||||||||||||||||||||| |||| | ||||| | |||||| ||||||||
Sbjct 1782 GCTTAGAGTGTTGGATGTTTCACATAACCACATCTGTGGGGAACTCCCAGTAGACACAAC 1841
Query 1806 AAGGTACCTTTGTTCTTCGCCGCTCTCTAATTCGGGTGAAATTGGAAGAGAGGTGCCTTG 1865
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1842 AAGGTACCTTTGTTCTTCGCCGCTCTCTAATTCGGGTGAAACTGGAAGAGAGGTGCCTAA 1901
Query 1866 TAAATACTGGGATGCGTATTTGGTGCTTAGAGATTTGATGAAACTGAAGCAGTTAGATAT 1925
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 TAAATACCAGGATGCGTATTTGGTGCTTAGAGATTTGATGAAACTGAAGCAGTTAGATAT 1961
Query 1926 TAGAGGCAACGACCTAATATTTTCAGGGGAAGAGTTCAGCTCTTTTGTCCGCCAGGTTGT 1985
|||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 1962 TAGAGGCAACGACCTAATATTTGCAGGAGAAGAGTTCAGCTCCTTTGTCCGCCAGGTTGT 2021
Query 1986 GCCAAAGCTTGTATGGCTTGATGGCCACAAACTCACAAATTAA 2028
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2022 GCCAAAGCTTGTATGGCTTGATGGCCACAAACTCACAAGTTAA 2064
Score = 965 bits (522), Expect = 0.0
Identities = 733/829 (88%), Gaps = 38/829 (5%)
Strand=Plus/Plus
Query 1 ATGCACGGTCGTGAGAGGA-ACGAGGCTTCGAAGCCAGAAGAGACCGCTGCTAAAGCCCT 59
|||||||||||| ||| || | |||| | |||| ||||| |||||||| |||||||||||
Sbjct 1 ATGCACGGTCGTAAGA-GAGAGGAGGATCCGAATCCAGAGGAGACCGCAGCTAAAGCCCT 59
Query 60 TGAGCTCCGGTCACTCCAGTCCCAGTTCATGTCCAATCACCATCAAAAGATTTACACACA 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 TGAGCTCCGGTCTCTCCAGTCCCAGTTCATGTCCAATCACCATCAAAAGATTTACACAAA 119
Query 120 GGAAGCAATTCAATTAAGCGCAAAGCTTCTAGGTATC-AATCCGGAGGCCTACACGGCTT 178
||||||||||||||||||||| ||||||||| || | ||||| ||| |||||| ||||
Sbjct 120 GGAAGCAATTCAATTAAGCGCGAAGCTTCTAA-TAACCAATCCAGAGTTCTACACTGCTT 178
Query 179 GGAACTATC-GAAAACTCGCCCTCGAGTCCCGAATCGACGAGGACTCTGATCCAAGCTTG 237
||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 179 GGAACTATCCGAAG-CTCGCCTTCGAGTCCCGACTCGACGAGGACTCTGATCCAAGCTTG 237
Query 238 GTCGACTCTATTATCGATGAAGAACTTAG-AGTCGTACAAAATGCCTTGAAGCGAAACC- 295
||| |||| ||||||||||||||||| || ||||||||||||||||||| || | ||
Sbjct 238 GTCAACTCAATTATCGATGAAGAACT-AGGAGTCGTACAAAATGCCTTGGAGAGGAATGT 296
Query 296 CTAAGTCCTATGGAGCTTGGTATCATCGAAAGTGGGTTTTGAGTAAAAAAGGACATTATT 355
| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 297 C-AAGTCATATGGGGCTTGGTATCATCGAAAGTGGGTTTTGAGTAAAAAAGGGCATTATT 355
Query 356 ATTCCTCCTTAGAAAAAGAGTTGCAACTTTTGAATGACTATCAAAAGCAATGCCTTGTGA 415
|| ||||||||||||| || |||||||||||||| ||||||||||||||| |||
Sbjct 356 ATCCCTCCTTAGAAAATGAATTGCAACTTTTGAACGACTATCAAAAGCAA-GCC------ 408
Query 416 ATGACTATCAAAAGCAAGACGATCCAAAAAAGCAAGACAATGCCAG--G-AACTTTCACG 472
| ||||||||||||||||| |||| ||||||| || |||| | ||||||||||
Sbjct 409 ----C-ATCAAAAGCAAGACGATG-AAAA--GCAAGACGATCCCAGCAGGAACTTTCACG 460
Query 473 CTTGGAACTATCGCAGGTTTGTTGTGGAGCTAACCGAGACGTCAGAAGAGGATGAGTTGC 532
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 461 CTTGGAACTATCGCAGGTTTGTTGTGGAGCTAACCAAGACGTCAGAAGAGGATGAGTTGC 520
Query 533 AGTATACAA---ATATGATCAATGATATTTGTTTCAGCATCTATTCTGCGTGGCACTATC 589
||||||||| ||||||||| ||||||| |||||| |||||||||||||||||| ||||
Sbjct 521 AGTATACAACTGATATGATCAGTGATATTAGTTTCACCATCTATTCTGCGTGGCATTATC 580
Query 590 GTAGTGTTCTAGTTTCAAGTTTAGTGGCAAAAAATGCTGATGGGTTTATGCCAAAGGAAA 649
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 581 GTAGTGTACTTGTTTCAAGTTTAGTGGCAAAAAAGGCTGATGGGTTTATGCCAAAGGAAA 640
Query 650 CGATTCGTCGTGAACTTG-ATTATGTACATAATGCTATTTTTACGG-ACGAACTTGGC-C 706
|||||||||||||| ||| |||||||||||| ||||||||||||| | ||| | |
Sbjct 641 CGATTCGTCGTGAA-TTGGATTATGTACATAGTGCTATTTTTACGTTA-GAAGA-GAAAC 697
Query 707 AAAGTGGATGGTTTTATTACCTTTGGCTTCTTGATCAAACTCTTAAAATGGAGACTCCTC 766
||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||
Sbjct 698 AAAGTGGCTGGTTTTATTACCTTTGGCTTCTTGATCAGACTGTTAAAATGGAGATTCCTC 757
Query 767 TTCGCTTTTCCTCATGGCCATCAGATGGTTCCATTATCACTACTTTCTG 815
||||||||||||| ||||| ||||||||||||||||||| | || ||||
Sbjct 758 TTCGCTTTTCCTCGTGGCCTTCAGATGGTTCCATTATCATT-CTATCTG 805
> AT4G24490.1 | Symbols: RGTA1, ATRGTA1 | RAB geranylgeranyl transferase
alpha subunit 1 | chr4:12655059-12658336 REVERSE LENGTH=2427
Length=2427
Score = 830 bits (449), Expect = 0.0
Identities = 1016/1271 (80%), Gaps = 113/1271 (9%)
Strand=Plus/Plus
Query 803 TCACTACTTTCTGTTCCGAGTCTGGTTCTTTTCCACTGATTCTTTACTTTGACCAAGCCG 862
|||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 919 TCACTACTTTTTGTTCTGAGTCGGGTTCTTTTCCACTGATTCTCTACTTTGACCAAGCTG 978
Query 863 TCAGTGGAGTTAGCTCGTCTACTGTTACTATTGATTCTGAACTCAAAGCCAATGAGGATC 922
| ||||||| ||||| ||||||||||| |||||||||||||| |||| || |||| |
Sbjct 979 TTGGTGGAGTAAGCTCATCTACTGTTACAATTGATTCTGAACTAAAAGGAAACGAGGGCC 1038
Query 923 TTGTTTGGGAACCAGTTTCGGATAATAAGAACTCTCAAGTGGACTCTTGTGTATGGGTTG 982
|||||||||||||| ||| | || || || ||||| || | || |||||||||||||
Sbjct 1039 TTGTTTGGGAACCA-ATTCCG--AACAAAAATTCTCAGGT-G--TCCTGTGTATGGGTTG 1092
Query 983 CTCATCTGAAATTTGACAGTAGAGGA-CCTTGCTTTAGTCGC-AAG-GAA-AACAAAGTC 1038
||| |||||||| || |||| | || |||||| | | | ||| ||| | || |||
Sbjct 1093 CTCGTCTGAAATATGTCAGTTCA-GATCCTTGC--GAAT-ACAAAGTGAAGATCAGAGT- 1147
Query 1039 AAGGTCAGCCT-TGGAGGAATTGTTTCTTCCATG-GGATGTAACTTGAGCACTCCTTATG 1096
|| | || | |||||| |||||||||| | |||| |||||| | | | |||||||
Sbjct 1148 -TGG-GA-ACTCTCCAGGAATCGTTTCTTCCA-GAGGATATAACTTCAACGCACCTTATG 1203
Query 1097 AGTTTGTATTTACAGTAC-TG--C---ACACTGTTGGAGAGTCGTCACAACAAGGCATTG 1150
||||||| ||||||| | || | | || || | ||| | || ||| |||||||||
Sbjct 1204 AGTTTGTCTTTACAGCCCATGTTCATGATACCGTCGAAGA-T--TCTCAAGAAGGCATTG 1260
Query 1151 TTTCATGGACGGATGGTTTTAACAATTGGGATGATGCACAGTCGAAGGATTTGAATTCT- 1209
|||||||||||||||| ||| | | |||||||| | | |||| |||||||||||||||
Sbjct 1261 TTTCATGGACGGATGGATTTGATATTTGGGATG-CG-A-AGTCAAAGGATTTGAATTCTC 1317
Query 1210 TT-T-A---TCG--C-CTTAAACGCTGATG-CGGGTTTTGAGTGGCGTAAGGAAGCTATA 1260
|| | | | | | ||||| ||||| | || |||| | |||||| ||||||||||
Sbjct 1318 TTGTCACCTTGGATCGGTTAAATGCTGA-GATGGATTTTAAATGGCGTCAGGAAGCTAT- 1375
Query 1261 AAGA-T-AGAGATTG-ATCATCTTC-GTAAT-TTGCCTGACAGCAAATTTGGAAAGCTCA 1315
||| | ||| ||| || | ||| || || |||||||||||||| ||||||||||||
Sbjct 1376 -AGATTCTGAGGTTGAAT-GT-TTCGGT-ATACTGCCTGACAGCAAAATTGGAAAGCTCA 1431
Query 1316 TTCTTGCAAGGCTTTTGATGGCTGAG-GAAACTATGATCTCGGATGATGCTGTTAAAGGT 1374
|||||||||||||||||||||| | ||| ||||| | |||||||||||||| || |||
Sbjct 1432 CTCTTGCAAGGCTTTTGATGGCT-CGTGAAGCTATGGTATCGGATGATGCTGTCAAGGGT 1490
Query 1375 -TTCCATTAT-ACAGAAATCCTCCAGCTCTATAACGATCTCATTGCCCTTGATTCCTGGC 1432
|| || ||| | ||||||||| ||||| ||||||||| | || || || ||||| | |
Sbjct 1491 GTT-CACTATGA-AGAAATCCTTCAGCTGTATAACGATTTGATGGCGCTGGATTCTTCAC 1548
Query 1433 A-TGCCCAGTACTACAAGGATGAGCACAGTGTAGCTCTTCTCCACAAGGTGACTTCAAGC 1491
| | |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1549 ACT-ACCAGTACTACAAGGATGAGCACAGCAAAGCTTTTCTCCACAAGGTGACTTCAAGC 1607
Query 1492 ACTGAATCCATGTTC-AGACACCTCTTT-CGGTACAGGAATATGAACAATATTGTATGTC 1549
| |||||| || || |||||||| ||| || || ||| ||||||||||| |||||||||
Sbjct 1608 AGTGAATCTTTG-TCAAGACACCT-TTTGCGATATAGGGATATGAACAATCTTGTATGTC 1665
Query 1550 TTA-GGCTCAATAACTTAACACTATCTCGGATAGCCGCGGTTGAGAAGTTGCTATTTGTT 1608
|| |||| ||||||||| ||||||||||||||||| | |||||||||||||| |||||
Sbjct 1666 -TACGGCTAAATAACTTATCACTATCTCGGATAGCCTCTGTTGAGAAGTTGCTGTTTGTC 1724
Query 1609 CAAATGTTAGATCTCAG-CAACAATGAGCTTCATT-CAGCTGAAGGATTGGAGGCGATGC 1666
||||||||||| || || | ||||||||||||||| || |||||||||||||||| ||||
Sbjct 1725 CAAATGTTAGACCTTAGTC-ACAATGAGCTTCATTCCA-CTGAAGGATTGGAGGCAATGC 1782
Query 1667 AGCTTCTCTGTTGTCTAAATCTGAGTCACAACAGAATCAGGAGCTTTTCAGCACTTGACT 1726
| ||||||| |||||||||||||||||||||||||||| |||| |||||||| || ||||
Sbjct 1783 AACTTCTCTCTTGTCTAAATCTGAGTCACAACAGAATCCGGAGTTTTTCAGCGCTGGACT 1842
Query 1727 CTCTAAGACATCTGAAGCAGCTTAGAGTGTTGGATGTTTCACATAACCTCATCGGCGGGG 1786
||||||||||| |||||||||| | ||||||||||||||||||||||| ||| |||
Sbjct 1843 CTCTAAGACATGTGAAGCAGCTGAAAGTGTTGGATGTTTCACATAACCACATTGGCA--- 1899
Query 1787 AGCACCCAGTGGACACAACAAGGTACCTTTGTTCTTCGCCGCTCTCTAATTCGG-GT-G- 1843
||||| ||||||||||||| || |||||||||||||| |||||||||||||| | || |
Sbjct 1900 AGCACTCAGTGGACACAACTAGATACCTTTGTTCTTCACCGCTCTCTAATTCAGAGTTGG 1959
Query 1844 ---A--A--AT-T-GGAAGAGAGG-TGCCT---T-G-T-A--AA-TACTGGGATGCGTAT 1884
| | || | |||| | || | ||| | | | | || |||||||||||||||
Sbjct 1960 GTCAGGATGATGTAGGAAAACAGAAT-CCTGGATTGGTTACGAAGTACTGGGATGCGTAT 2018
Query 1885 TTG-GTGCTTAG-AGATTTGATGAAACTGAAGCAGTTAGATATTAG-AGGCAACGACCTA 1941
| | ||| ||| |||||||| | ||||| ||||||||||| || ||| || || |
Sbjct 2019 T-GCGTG-TTAACAGATTTGA--AT-CTGAAACAGTTAGATAT-AGCAGGAAATGA---A 2069
Query 1942 ATATTTTCAGGGGAAGAGTTCAGCTCTTTTGTCCGCCAGGTTGTGCCAAAGCTTGTATGG 2001
|| | ||||||| || |||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2070 AT-TG--CAGGGGAGGAATTCAGCTCTTTTGTCCTCCAGGTTGTCCCAAAGCTTGTATGG 2126
Query 2002 CTTGATGGCCA 2012
|| ||||||||
Sbjct 2127 CTCGATGGCCA 2137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100501491090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5