BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493805
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41800.1 | Symbols: | Transmembrane amino acid transporter ... 2453 0.0
> AT5G41800.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr5:16733773-16735991 FORWARD LENGTH=1531
Length=1531
Score = 2453 bits (1328), Expect = 0.0
Identities = 1466/1532 (96%), Gaps = 12/1532 (1%)
Strand=Plus/Plus
Query 1 TCATCATCATTCCATATATAAATCATTCACTTGCAGAATCTTCTTCTCTTTCACACT-AA 59
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2 TCATCATCATTCCATATATAAATCATTCACTTGTAGAATCTTCTTCTCTTTCACACTAAA 61
Query 60 A-TCATCAATGACGGATCCTCCTAGACCCGACCCGTTTCCTGTTACCCGACTCGATTCCG 118
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 62 ATTCATCGATGACGGATCCTCCCAGACCCGACCCGTTTCCTGTTACCCGACTCGATTCCG 121
Query 119 ACGCCGGAGCTCTCTTCGTCCTCCAATCAAAAGGCGAGTGGTGGCACGCCGGATTTCATC 178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ACGCCGGTGCTCTCTTCGTCCTCCAATCAAAAGGCGAGTGGTGGCACGCCGGATTTCATC 181
Query 179 TAACGACGGCGATTGTTGGTCCAACGATATTGACATTACCGTATGCGTTCAGAGGATTAG 238
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 182 TAACGACGGCGATTGTTGGTCCGACGATATTGACATTACCATATGCGTTTAGAGGATTAG 241
Query 239 GATGGTGGTTAGGGTTTGTTTGTTTAACGACGATGGGTCTCGTTACTTTCTACGCTTATT 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 242 GATGGTGGTTAGGGTTTGTTTGTTTAACGACGATGGGACTCGTTACTTTCTACGCTTATT 301
Query 299 ACCTCATGTCTAAAGTTCTTGATCACTGTGAAAAATCCGGCCGCCGTCACATCCGGTTCC 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 302 ACCTCATGTCTAAGGTTCTTGATCACTGTGAAAAATCCGGCCGCCGTCACATCCGTTTCC 361
Query 359 GGGAACTCGCCGCCGATGTTCTTGGATCTGGATGGATGTTTTATGTAGTGATCTTTATTC 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 362 GGGAACTCGCCGCCGATGTTCTTGGATCTGGATTGATGTTTTATGTAGTGATCTTTATTC 421
Query 419 AAACAGCTATCAACACTGGAATTGGTATTGGCGCTATTCTACTTGCAGGTCAATGTCTTG 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 422 AAACAGCTATCAACACTGGAATTGGTATTGGCGCCATTCTACTTGCAGGTCAATGTCTTG 481
Query 479 ATATAATGTACTCGAGTCTTTACCCGCAAGGAACGTTGAAGCTTTACGAGTTCATTGCTA 538
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 482 ATATAATGTATTCGAGTCTTTTCCCGCAAGGAACGTTGAAGCTTTACGAGTTCATTGCTA 541
Query 539 TGGTGACTGCTGTGATGATGGTTCTCTCACAGCTCCCAAGTTTTCACTCTCTTAGACACA 598
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 542 TGGTGACTGTTGTGATGATGGTTCTCTCACAGCTTCCAAGTTTTCACTCTCTTAGACACA 601
Query 599 TAAACTTTGCGTCTCTGATTCTCAGCTTAGGATATACTTTCCTCGTCGTTGGGGCTTGTA 658
| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TTAACTGTGCGTCTCTGCTTCTCAGCTTAGGATATACTTTCCTCGTCGTTGGGGCTTGTA 661
Query 659 TTAACCTAGGTTTGTCTAAAAACGCTCCTAAACGCGACTATTCTTTGGAGCATTCGGATT 718
| |||||||||||||| ||||||||||||||||| || |||||| | |||||||||||||
Sbjct 662 TCAACCTAGGTTTGTCGAAAAACGCTCCTAAACGTGAGTATTCTCTAGAGCATTCGGATT 721
Query 719 CAGGGAAAGTTTTTAGTGCCTTCACATCGATTTCGATCATAGCTGCTATTTTCGGAAATG 778
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 722 CAGGGAAAGTTTTTAGTGCCTTCACATCAATTTCGATCATAGCTGCTATTTTCGGAAATG 781
Query 779 GAATCCTACCCGAAATACAGGCAACTCTTGCTCCACCAGCAACAGGGAAGATGTTGAAAG 838
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 782 GAATCTTACCCGAAATACAGGCAACTCTTGCTCCACCAGCCACAGGGAAGATGTTGAAAG 841
Query 839 GACTATTGTTGTGTTATAGTGTGATCTTCTTCACGTTTTACTC-GACTGCAATTTCGGGA 897
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 842 GACTATTGTTGTGTTATAGTGTGATCTTCTTCACGTTTTACTCTG-CTGCAATTTCGGGA 900
Query 898 TATTGGGTTTTTGGTAACAATTCGAGCTCTAATATTCTCAAGAACTTAATGCCTGATGAA 957
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TATTGGGTTTTTGGTAACAATTCGAGCTCTAATATCCTCAAGAACTTAATGCCTGATGAA 960
Query 958 GGACCGACTTTGGCTCCTATCGTGGTGATTGGCTTAGCGGTCATCTTTGTCCTTCTTCAG 1017
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 961 GGACCGACTCTGGCTCCTATCGTGGTGATTGGCTTAGCTGTCATCTTTGTCCTTCTTCAG 1020
Query 1018 CTTTTCGCCATTGGCCTCGTGTATTCTCAAGTTGCATATGAGATAATGGAGAAGAAATCA 1077
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1021 CTTTTCGCCATTGGCCTTGTGTATTCTCAAGTTGCGTATGAAATAATGGAGAAGAAATCA 1080
Query 1078 GCGGATACAACAAAAGGGATATTCTCAAGACGCAACCTTGTGCCCCGTTTGATACTAAGA 1137
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1081 GCGGATACAACAAAAGGGATATTCTCAAAACGCAACCTTGTGCCGCGTTTGATACTAAGA 1140
Query 1138 ACACTATATATGGCGTTTTGCGGGTTCATGGCAGCGATGCTACCGTTCTTTGGTGATATA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1141 ACACTATATATGGCGTTTTGCGGGTTCATGGCAGCGATGCTACCGTTCTTTGGGGATATA 1200
Query 1198 AACGCTGTGGTAGGAGCGTTTGGGTTTATCCCACTCGATTTCGTGCTGCCAATGCTTCTT 1257
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AACGCGGTGGTAGGAGCGTTTGGGTTTATCCCACTCGATTTCGTGCTGCCAATGCTTCTA 1260
Query 1258 TACAACATGACCTATAAGCCAACGAAACGGAGCTTCACATATTGGATAAACATGACGATA 1317
||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct 1261 TACAACATGACCTATAAGCCAACCAGACGGAGCTTCACGTATTGGATAAACATGACGATA 1320
Query 1318 ATGGTTGTGTTCACTTGTACGGGAGTCCTGGGAGCTTTCTCCTCCATTAGGAAACTTGTT 1377
|||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||||
Sbjct 1321 ATGGTTGTGTTCACTTGTGCAGGACTCATGGGAGCTTTCTCCTCCATTAGGAAACTTGTT 1380
Query 1378 CTTGATGCTAATAAGTTCAAGTTGTTTAGCAGTGAAGTTGTTGATTAGATGGTTATGATA 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1381 CTTGATGCTAATAAGTTCAAGTTGTTTAGCAGTGAAGTTGTTGATTAGATGGTTTTGATA 1440
Query 1438 GTATGGTAAAA-CATAGACAACACTTGTTTTGTGGGttttttttACACTTGTACATGAAT 1496
|| || ||||| |||| |||| ||||||||||||| || ||||||||||||||||
Sbjct 1441 GTGTGATAAAAACATAAACAATACTTGTTTTGTGG-TT------ACACTTGTACATGAAT 1493
Query 1497 TTTTTGAGTCGATTCATTATCACACAAAATGC 1528
|| | |||| ||||||||||||||||||||||
Sbjct 1494 TTCTCGAGTTGATTCATTATCACACAAAATGC 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75401218590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5