BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493809

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G41761.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   584    2e-166


> AT5G41761.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G55570.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr5:16711437-16712031 FORWARD LENGTH=595
Length=595

 Score =  584 bits (316),  Expect = 2e-166
 Identities = 404/446 (91%), Gaps = 8/446 (2%)
 Strand=Plus/Plus

Query  1    ATGGGAATCAAATTCAGCCATGTTCCTTCGAATACAACCATTCACTACATAAGTCATCAA  60
            |||||||||||||||||||| | |||||||||||||||||||||| ||| ||||||||||
Sbjct  1    ATGGGAATCAAATTCAGCCAAGGTCCTTCGAATACAACCATTCACAACAGAAGTCATCAA  60

Query  61   GATGGTGAAGATCAAAGGAGCAAGACGACCACGAAGGTTGATCAAGACAAGTCTCAAAAT  120
            |||||||| |||||||||| | ||||| | |||||| |  |||| |||||| ||||||||
Sbjct  61   GATGGTGAGGATCAAAGGAACGAGACGGCGACGAAGATCAATCATGACAAGCCTCAAAAT  120

Query  121  CGATCAAGCAGCTTTCAGATTCCACTTCATTATCCAAAGTATACAAAGAGTGATTATGAG  180
            | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CAATCAAGTAGCTTTCAGATTCCACTTCATTATCCAAAGTATACAAAGAGTGATTATGAG  180

Query  181  AAAATGCCAGAGTGGCAATTGGATCAGCTTCTGAGAGAGTATGGCTTGCCGGTTATCGGA  240
            ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct  181  AAAATGCCAGAGTGGCAATTGGATCGGCTTCTGAGAGAGTACGGCTTGCCGGTTATCGGA  240

Query  241  GATTCTTACGAGAAGAGGAAATTTGCCATCGGAGCTTTTCTCTGGTCGTCGGAGAACGAG  300
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  241  GATTCTTACGAGAAGAGGAAATTTGCCATCGGAGCATTTCTCTGGTCGTCGGAGAACGAG  300

Query  301  CACTAGAT-AG-TCTCATCGTA-----CGTCGTCGTTTCATATGGTGCTATTTAAATAAA  353
            |||||||| |  | | ||||||     |||| |||||||||||||| || ||| ||||||
Sbjct  301  CACTAGATCATATGTTATCGTAATAGACGTCATCGTTTCATATGGTACTGTTTGAATAAA  360

Query  354  AATAAGTTGGTGAAATTGAGTAAAAGAA-CATGTTTGCATGTATATATTATCTTGGACAT  412
             ||||||||||||||  | | ||||||| |||||||||||||| |||||||| |||||||
Sbjct  361  GATAAGTTGGTGAAAGCGTGGAAAAGAAACATGTTTGCATGTAGATATTATCCTGGACAT  420

Query  413  GTATGTTTTATAAAatatatatatat  438
            |||||||||||| |||||||||||||
Sbjct  421  GTATGTTTTATATAATATATATATAT  446


 Score = 97.1 bits (52),  Expect = 1e-19
 Identities = 66/72 (92%), Gaps = 3/72 (4%)
 Strand=Plus/Plus

Query  439  TGTTTCTCTACTCTCCATGTATGTTGTTACCTCATGGGCACGACATTTGTAATAGCTATA  498
            |||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||
Sbjct  473  TGTTTCTCTACTCTCCATGTA---TGTTACCTCATGGGCACGACATTTGTAATAACTATA  529

Query  499  CTAAACTTTATA  510
            |||| ||| |||
Sbjct  530  CTAAGCTTAATA  541



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5