BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493813
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41720.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 924 0.0
> AT5G41720.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box protein-related (TAIR:AT1G64290.1); Has 70 Blast
hits to 70 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr5:16683165-16683942
REVERSE LENGTH=778
Length=778
Score = 924 bits (500), Expect = 0.0
Identities = 614/669 (92%), Gaps = 8/669 (1%)
Strand=Plus/Plus
Query 1 AATCCTCTCTTAAACTTTTCTCCGGCGATGATGAGGAATTCTCCCATGAACGACGATGTG 60
||||||||||| ||||||||| ||||||||||| ||||||||| || | ||||||||
Sbjct 11 AATCCTCTCTTTCACTTTTCTCTGGCGATGATGATGAATTCTCCGTTGGATTACGATGTG 70
Query 61 ATGCTAGAGATCATGTCTTATTGTCCTGCAACGGAGATGGCAAAATTTCGTCTACTAAAC 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 71 TTGCTAGAGATCATGTCTTATTGTCCTGCAACGGAGATGGCAAAATTCCGTCTACTAAGC 130
Query 121 AAAGAATGCAACAAACGAAGTTATGAGATGAGTTTTCTCAATCGTCATCTCCATAGAACC 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 131 AAAGAATGCAACAAACGAAGTTATGAGATGAGTTTTATCAATCGTCATCTCCATAGAACC 190
Query 181 AACTCTTTTCTCGGCTATATCTTTTATTACAAAGATAACCATTGGTTTAGGAATCACTCC 240
|||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 191 AACTCTTTCCTCGGCTATATATTTTATTACAAAGATAACAAGTGGTTTAGGAATCACTCA 250
Query 241 TGTTTTGTCTCCGGCGTCGATGAGAAAGA-AATATACCGAATCAATCTTGCATATCTTCC 299
||||||||||||||||||||||||||||| || | |||||||||||||||| | ||||||
Sbjct 251 TGTTTTGTCTCCGGCGTCGATGAGAAAGATAAAA-ACCGAATCAATCTTGCCTTTCTTCC 309
Query 300 TCCTCGTTGTAATCCATCCATCGAAGCTTGTGATACATATCATGGGATTTTGCTCTGTGT 359
||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 310 TCCCCTTTGTAATGTATCCATCGAAGCTTGTGATACACATCATGGGATTTTGCTCTGTGT 369
Query 360 CGATGATGTGTATAAAGGTAGG-AAAAGGATACCGGATTACATCGTTTGCAAACCGGCTA 418
||||| ||||| |||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 370 CGATGTTGTGTTTAAAGGTAGGCAAAAG-ATACCAGATTACATCGTCTGCAAACCGGCTA 428
Query 419 CAAAACAGTACCGAATCATACCAAACCCGAAGACCAGGTTTGGCACTGTTGCAACCGGTT 478
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 429 CAAAACAGTACCGGATCATACCAAACCCAAAGACCAGGTTTGGCACTGTCGCAACCGGTT 488
Query 479 TAATGGTGATTTCGTATAACCCGTTTCGGTACAAGATCATTAGGGTTTCTGATACAGGGG 538
||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 489 TAATGGTGATTTCGTCGAACCCGTTTCGGTATAAGATCATTAGGGTTTCTGATACATGGG 548
Query 539 CAACAGTGAGTAGAGATGGTGTCTATAATCTACGAGAGAGTTTGTTTCAATAAAAATGAT 598
||| |||| |||| ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 549 CAAGAGTGGGTAGGGATGGTGTCTATAATCTACGAGAGAGTTTGTTTGAATAAAGATGAC 608
Query 599 GTTgaaggaaaagaaaggagcgagaga-ggaacaagagacgggactatagaga--agaag 655
|||||||||||||| ||||||||| || |||| |||||| ||||||||| ||| |||||
Sbjct 609 GTTGAAGGAAAAGATAGGAGCGAG-GAAGGAAGAAGAGATGGGACTATATAGAGGAGAAG 667
Query 656 aaggaaTAT 664
|||||||||
Sbjct 668 AAGGAATAT 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35013200459
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5