BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493816
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enz... 1075 0.0
AT1G64230.4 | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 ... 451 3e-126
AT5G53300.1 | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 ... 420 1e-116
> AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enzyme
8 | chr5:16675842-16677509 FORWARD LENGTH=803
Length=803
Score = 1075 bits (582), Expect = 0.0
Identities = 646/677 (95%), Gaps = 3/677 (0%)
Strand=Plus/Plus
Query 1 ATCTGCAGGAGTGAATCACAGAACCGAATTTGGAGGATTCTTTCTGAGGGATTTTTCAGT 60
||||||||||||||||| || |||| |||||||||||||||||||||||| ||| |||||
Sbjct 2 ATCTGCAGGAGTGAATCGCAAAACCAAATTTGGAGGATTCTTTCTGAGGGGTTTCTCAGT 61
Query 61 GAGAAAATGGCGTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCA 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GAGAAAATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCA 121
Query 121 ACCTCCTGCATTTTTGTAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATA 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ACCTCCTGCATTTTTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATT 181
Query 181 ATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCT 241
Query 241 CCTGACTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAAT 300
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 242 CCGGACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAAT 301
Query 301 ATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 302 ATCAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTC 361
Query 361 ACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 ACCATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGAC 421
Query 421 CCGTTGGTGCCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAGTACGAGGCCACT 480
|| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 422 CCTTTGGTACCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAATACGAGGCTACT 481
Query 481 GCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GCAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAACAAAGATTCGTATGCTTCAGCAC 541
Query 541 CTGTTTATGCTCTCATATCTGTTTGTTTCTTCTTCCTGTTTTAACTTTAATAAATATGTC 600
||||||||| | |||| ||||||| |||||||||| |||||||||||||||||| |||||
Sbjct 542 CTGTTTATGTTTTCATGTCTGTTTCTTTCTTCTTCTTGTTTTAACTTTAATAAAAATGTC 601
Query 601 TAAAATATCTACTTTTTTCATCTATACGATAT--GTTTATGGGTTTTATTATCAGCATCT 658
||||||||| ||||||| | ||| ||| |||| |||||||||||||||||||| |||||
Sbjct 602 TAAAATATCAACTTTTT-CGTCTGTACTATATATGTTTATGGGTTTTATTATCATCATCT 660
Query 659 TTATCTGAAATTTGAAG 675
|||||||||||||||||
Sbjct 661 TTATCTGAAATTTGAAG 677
> AT1G64230.4 | Symbols: UBC28 | ubiquitin-conjugating enzyme 28
| chr1:23833563-23835536 FORWARD LENGTH=1019
Length=1019
Score = 451 bits (244), Expect = 3e-126
Identities = 340/387 (88%), Gaps = 4/387 (1%)
Strand=Plus/Plus
Query 129 CAT-TTTTGTAG-GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGT 186
||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CATGTTTTGTTGTGCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGT 373
Query 187 CC-TGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCTGA 245
|| | | || ||||| |||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 374 CCAT-CTGATAGTCCTTATTCAGGCGGTGTCTTTCTCGTAACCATTCACTTCCCTCCGGA 432
Query 246 CTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAA 305
|| || |||||||| |||||||||||||| ||||| || ||||| ||||||||| ||||
Sbjct 433 TTATCCTTTCAAACCACCAAAGGTTGCATTCAGGACAAAAGTGTTCCACCCTAATGTCAA 492
Query 306 CAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTCACCAT 365
|||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 493 CAGCAATGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCAT 552
Query 366 TTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCGTT 425
|| ||||| ||||| ||||||||||| ||||||| || ||||| |||||||| || ||
Sbjct 553 ATCGAAGGTTTTGCTTTCGATATGTTCATTGTTAACGGACCCAAACCCAGATGATCCATT 612
Query 426 GGTGCCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAGTACGAGGCCACTGCAAG 485
||| ||||||||||| ||||||||||||||||| ||||| ||||| ||| | ||||| ||
Sbjct 613 GGTTCCAGAGATTGCTCACATGTACAAAACCGATAGAGCAAAGTATGAGTCTACTGCGAG 672
Query 486 AAACTGGACTCAGAAGTATGCCATGGG 512
|| |||||||||||| ||||| |||||
Sbjct 673 AAGCTGGACTCAGAAATATGCAATGGG 699
> AT5G53300.1 | Symbols: UBC10 | ubiquitin-conjugating enzyme 10
| chr5:21632514-21634229 REVERSE LENGTH=876
Length=876
Score = 420 bits (227), Expect = 1e-116
Identities = 382/456 (84%), Gaps = 13/456 (3%)
Strand=Plus/Plus
Query 67 ATGGCGTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCT-C 125
||||||||||| |||||||||||||| |||||||||||||||| || ||| |||| |
Sbjct 142 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGA---TCC-ACCTAC 197
Query 126 CTGCAT-TTTTGTAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGG 184
| ||| | | |||||| |||||||||||||||||||| ||||| || || |||||||
Sbjct 198 AT-CATGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAATGG 256
Query 185 GTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTT-CTCGTTACCATTCACTTCCCTCCT 243
||||| |||||||||| ||| | || ||||| ||| || || ||||| || ||||||||
Sbjct 257 GTCCTTCAGAGAGTCCTTATGCTGGAGGTGT-TTTCCTTGTAACCATCCATTTCCCTCCG 315
Query 244 GACTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCA-CCCTAATAT 302
|| ||||||||||| ||||| ||||| || |||||||| |||||||| || ||| || ||
Sbjct 316 GATTACCCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCC-AACAT 374
Query 303 CAACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTCAC 362
||||||||||| ||||||||||| ||||| ||||| || || ||||| || || |||||
Sbjct 375 TAACAGCAACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCAC 434
Query 363 CATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCC 422
||||||||||||| |||| ||||| ||||| ||||||| |||||||| || ||||| ||
Sbjct 435 CATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCC 494
Query 423 GTTGGTGCCAGAGATTGCACACATGTACAAAACCGAC-AGAGCCAAGTACGAGGCCACTG 481
|||||||| ||||| || ||||||||||| || ||| ||| |||||||||| ||||||
Sbjct 495 TTTGGTGCCCGAGATAGCTCACATGTACAAGACTGACAAGA-ACAAGTACGAGTCCACTG 553
Query 482 CAAGAAACTGGACTCAGAAGTATGCCATGGGCTAAA 517
|| ||| |||||||||||||||||||||||||||||
Sbjct 554 CACGAAGCTGGACTCAGAAGTATGCCATGGGCTAAA 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5