BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493820
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41680.1 | Symbols: | Protein kinase superfamily protein | ... 2121 0.0
AT5G41685.1 | Symbols: | Mitochondrial outer membrane transloc... 449 3e-125
AT1G64210.1 | Symbols: | Leucine-rich repeat protein kinase fa... 265 1e-69
> AT5G41680.1 | Symbols: | Protein kinase superfamily protein
| chr5:16667885-16669489 FORWARD LENGTH=1605
Length=1605
Score = 2121 bits (1148), Expect = 0.0
Identities = 1483/1635 (91%), Gaps = 61/1635 (4%)
Strand=Plus/Plus
Query 1 TTTGTTTGACTTCTTGAGAAGGAAGAATCAGAGTTTCT-CGATTCTTTGT-TTCTTCTCT 58
|||| |||||||||| | | ||||| ||||||||||| || |||| | | | | ||||
Sbjct 2 TTTGCTTGACTTCTT--G-A-GAAGATTCAGAGTTTCTCCG-TTCTCTATATGC-TCTCC 55
Query 59 ACCGGAAAGTCAACATAACCGGCTCTTGGTCCCATTGGAGAGAGCATCATCCTAAGCTCT 118
| ||||||||||| |||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 56 ATCGGAAAGTCAATATAACCGGCTCTCGGGCCCATTGGAAAGAGCATCATCCTAAGCTCT 115
Query 119 CTACCAGGTTTGACCAAGCTTATAGCCTTGGAGAACTTTTGATTTCGATCTTGACGCTTT 178
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 116 CTACCAGGTTTGACCAAGCTTATAGCCTTGGAGAACATTTGATTTCGATCTTGACGCTTT 175
Query 179 AAATTACCTCTAC-A---------TT-CTGTTCAACATTCTGGGTG-AAACGTGCGAGAG 226
||||||||||||| | || ||||| ||||||||||||| || || ||| |||
Sbjct 176 AAATTACCTCTACAAGTGTTTGCTTTCCTGTTGAACATTCTGGGTGCAATCGAGCG-GAG 234
Query 227 ATGATGGCTTGTTGCTTGCGAAAGAAAAGGCGCATGAAAGGTAAACTCTCATGGAAGTCA 286
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 235 ATGATGGCTTGTTGCTTGCGAAATAAACGGCGCATGAAAGGTAAACTCTCATGGAAGTCA 294
Query 287 AAGAAGAGAGATTTGTCTCCTGCCGGTAACTGGGCGCCAGAAGATGATGATGTTGAAGGG 346
||||||||||||||||||| | | || |||||||| ||||||||||| ||| |||||||
Sbjct 295 AAGAAGAGAGATTTGTCTCATTCAGGAAACTGGGCACCAGAAGATGACAATGATGAAGGG 354
Query 347 AAAATCGTATTCTTTGGAGGAAGTAACTATACCTTTGATTTGGATGATTTGTTAGCTGCC 406
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AAAATCGTTTTCTTTGGAGGAAGTAACTATACCTTTGATTTGGATGATTTGTTAGCTGCA 414
Query 407 TCTGCAGAAATTTTGGGGAAAGGTGCTTATGTCACAACCTACAAAGTAGTTGTGGAGGAC 466
||||||||||||||||||||||| ||| |||| |||||||||||||||| |||||| |||
Sbjct 415 TCTGCAGAAATTTTGGGGAAAGGCGCTCATGTTACAACCTACAAAGTAGCTGTGGAAGAC 474
Query 467 ACGGCAACGGTAGTAGTGAAGAGATTGGAGGAGGTGGTTGTCGGAAGACGAGAGTTTGAG 526
|| || ||||||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 475 ACAGCCACGGTAGTAGTGAAGAGATTGGAGGAGGTGGTTGTTGGGAGAAGAGAGTTTGAG 534
Query 527 CAACAAATGGAGATCGTTGGTAGAATAAGGCATGATAATGTAGCTGAGCTTAAAGCCTAC 586
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 535 CAACAAATGGAGATCGTTGGTAGAATCAGGCATGATAATGTAGCCGAGCTTAAAGCCTAC 594
Query 587 TACTATTCCAAAAACGATAAGCTTGCTGTTTATAGCTATTACAGTCAAGGAAACCTATTC 646
||||||||||| | ||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 595 TACTATTCCAAGATCGATAAGCTCGCTGTTTACAGTTATTACAGTCAAGGAAACCTATTT 654
Query 647 GAGATGCTGCACGGTAAGCTATCTTTCTGTATTCC-TTGGTCTATACTTCTTTGGTCTGC 705
||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |||
Sbjct 655 GAGATGCTGCACGGTAAGCTATCTTTCTGTATTCCGTT-GTCTATGCTTCTTTGGTATGC 713
Query 706 -CT-T-AAAAAGCAAGAACTCAACTTTTGCAGGAGATAAAGGAGAGAACCGAGTACCTTT 762
| | |||| ||| ||||||||||||||| | | | ||||| || |||||||||
Sbjct 714 AGTATCGAAAACCAATAACTCAACTTTTGCA-G-G----A-GAGAG--CCAAGTACCTTT 764
Query 763 AGATTGGGAGTCCCGGTTAAGAATCGCCATTGGTGCAGCAAGAGGGCTGGCTATTATCCA 822
||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 765 AGATTGGGAGTCCCGTTTAAGAATCGCCATTGGTGCAGCAAGAGGGTTGGCTATAATCCA 824
Query 823 CGAAGCAGACGACGGGAAGTTTGTCCATGGCAATATCAAATCCTCCAATATCTTCATGAA 882
||||||||||||||||||||||||||| || || |||||||||||||||||||||| |||
Sbjct 825 CGAAGCAGACGACGGGAAGTTTGTCCACGGTAACATCAAATCCTCCAATATCTTCACGAA 884
Query 883 CTC-ACAATGCTATGGCTGCATCTGCGATCTCGGCTTAACACACATCACGAAATCTCTAC 941
||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 885 CTCGA-AATGCTACGGCTGCATCTGCGATCTCGGCTTAACACACATCACGAAATCTCTCC 943
Query 942 CTCAGACTACCTTACGTTCATCAGGTTACCACGCACCTGAGATAACAGACACGAGAAAGT 1001
| ||||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct 944 CGCAGACTACCTTACGTTCTTCGGGTTACCACGCACCTGAGATAACAGATACAAGAAAGT 1003
Query 1002 CCACACAGTTCTCTGATGTATACAGCTTCGGAGTGGTATTACTCGAGCTTCTAACAGGGA 1061
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1004 CCACACAGTTCTCTGATGTATACAGCTTCGGGGTGGTGTTACTCGAGCTTCTAACAGGGA 1063
Query 1062 AATCTCCCGCGAGTTTGCTATCAAC-AGACGAAAACATGGACTTGGCGAGCTGGATAAGG 1120
|||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1064 AATCACCCGCGAGTCCGCTATC-ACTAGACGAAAACATGGACTTGGCGAGCTGGATAAGG 1122
Query 1121 TCGGTGGTGTCGAAAGAGTGGACAGGAGAAGTATTCGA-CATCGAGCTAATGAGGCAAAT 1179
|| ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 1123 TCAGTGGTGTCGAAAGAGTGGACAGGAGAAGTATTCGATAAT-GAGCTAATGATGCAAAT 1181
Query 1180 GGATATAGAAGAAGAGATGGTTGAGTTGTTGCAAATAGGTTTGGCTTGTGTTGCCTTGAA 1239
|| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1182 GGGTATAGAAGAAGAGTTGGTTGAGATGTTGCAAATAGGTTTGGCTTGTGTTGCCTTAAA 1241
Query 1240 ACCTCAAGATCGACCTCATATAACACATATTGTAAAAATGATACAAGACATTCCAACAAA 1299
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1242 ACCTCAAGATCGACCTCATATAACACACATTGTAAAATTGATACAAGACATTCCAACAAA 1301
Query 1300 CTTCAATCTTTAAAGCATTTTCTCAGATTATCAAAACATAAAATTCGATTTCACATTAAT 1359
||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||| |
Sbjct 1302 CTTCAATCTTTAAAGCA-ATTCCCAGATTTTCAAAACATAAAATTCGATTTCACATT-A- 1358
Query 1360 TAATAGCATAAGCTAAAGTTATTGAATACAGAACCATAGAGAAAGTATTTC-AAAACTAG 1418
| || ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||
Sbjct 1359 T-AT--CATAAGCTAAAGTTATTCAATACAGTACCATAGAGAAAGTA-TTCAAAAACTAG 1414
Query 1419 CTAATGaaaaaaaGCAT-AAAGAAGATTCGGCGAATCTAAGAACATGCGTAGAGAGATAT 1477
|||||| |||||||||| ||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 1415 CTAATG-AAAAAAGCATAAAAGAAGATTCGGCGAATCTAAGAACACGCGTA-A-AGATAT 1471
Query 1478 GAAGAAGCCAAACCACAGG-AGA-AGA-TCGATTCGA-TT-CGAT--TGATGAAATTGGA 1530
||||||||||||||| ||| ||| || |||||| || || | | |||||||||||||
Sbjct 1472 GAAGAAGCCAAACCAGAGGAAGACCGATTCGATT-GATTTAGGTTGATGATGAAATTGGA 1530
Query 1531 TGGATCAGACAGGGCTAAGGAGCTGGAAGAGATGAGGTTTGGGATCGGAGTTCATGCCGA 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 TGGATCAGACAGGGCTAAGGAGCTGGAAGAGATGAGGTTTGGGATCGGAGTTCATGCCGA 1590
Query 1591 TGAAGATGACCAGAG 1605
||||||||||||||
Sbjct 1591 CGAAGATGACCAGAG 1605
> AT5G41685.1 | Symbols: | Mitochondrial outer membrane translocase
complex, subunit Tom7 | chr5:16669149-16669723 REVERSE
LENGTH=575
Length=575
Score = 449 bits (243), Expect = 3e-125
Identities = 319/352 (91%), Gaps = 20/352 (6%)
Strand=Plus/Minus
Query 1263 CACATATTGTAAAAATGATACAAGACATTCCAACAAACTTCAATCTTTAAAGCATTTTCT 1322
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 575 CACACATTGTAAAATTGATACAAGACATTCCAACAAACTTCAATCTTTAAAGCA-ATTCC 517
Query 1323 CAGATTATCAAAACATAAAATTCGATTTCACATTAATTAATAGCATAAGCTAAAGTTATT 1382
|||||| ||||||||||||||||||||||||||| | | || |||||||||||||||||
Sbjct 516 CAGATTTTCAAAACATAAAATTCGATTTCACATT-A-T-AT--CATAAGCTAAAGTTATT 462
Query 1383 GAATACAGAACCATAGAGAAAGTATTTC-AAAACTAGCTAATGaaaaaaaGCAT-AAAGA 1440
||||||| ||||||||||||||| ||| |||||||||||||| |||||||||| |||||
Sbjct 461 CAATACAGTACCATAGAGAAAGTA-TTCAAAAACTAGCTAATG-AAAAAAGCATAAAAGA 404
Query 1441 AGATTCGGCGAATCTAAGAACATGCGTAGAGAGATATGAAGAAGCCAAACCACAGG-AGA 1499
|||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||| |||
Sbjct 403 AGATTCGGCGAATCTAAGAACACGCGTA-A-AGATATGAAGAAGCCAAACCAGAGGAAGA 346
Query 1500 -AGA-TCGATTCGA-TT-CGAT--TGATGAAATTGGATGGATCAGACAGGGCTAAGGAGC 1553
|| |||||| || || | | ||||||||||||||||||||||||||||||||||||
Sbjct 345 CCGATTCGATT-GATTTAGGTTGATGATGAAATTGGATGGATCAGACAGGGCTAAGGAGC 287
Query 1554 TGGAAGAGATGAGGTTTGGGATCGGAGTTCATGCCGATGAAGATGACCAGAG 1605
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 286 TGGAAGAGATGAGGTTTGGGATCGGAGTTCATGCCGACGAAGATGACCAGAG 235
> AT1G64210.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:23831033-23832863 FORWARD LENGTH=1764
Length=1764
Score = 265 bits (143), Expect = 1e-69
Identities = 267/325 (82%), Gaps = 16/325 (5%)
Strand=Plus/Plus
Query 344 GGGAAAATCGTATTCTTTGGAGGAAGTAACTA--TACCTTTGATTTGGATGATTTG-TTA 400
||||| ||| | |||||||| ||||| ||| | || |||||||| ||||||||| | |
Sbjct 862 GGGAAGATCATCTTCTTTGGTGGAAGAAACCACTTA--TTTGATTTAGATGATTTGCTAA 919
Query 401 GCTGCCTCTGCAGAAATTTTGGGGAAAGGTGCTTAT-GTCACAACCTACAAAGTAGTTGT 459
||| | ||||||||| |||||||||| ||||||| | || |||||||| || ||| |
Sbjct 920 GCT-CATCTGCAGAAGTTTTGGGGAAGGGTGCTTTTGGT-ACAACCTATAAGGTAACAAT 977
Query 460 GGAGGACACG-GCAACGGTAGTAGTGAAGA-GATTGGAGGAGGTGGTTGTCGGAAGACGA 517
|||||||| | || ||||| || || || | ||||| |||| || || || |||||||||
Sbjct 978 GGAGGACATGAGC-ACGGTCGTTGT-AAAACGATTGAAGGAAGTTGTCGTTGGAAGACGA 1035
Query 518 GAGTTTGAGCAACAAATGGAGATCGTTGGTA-GAATAAGGCATGATAATGTAGCTGAGCT 576
|||||||||||||||||||||||| |||||| || | || ||||| ||||||||||||||
Sbjct 1036 GAGTTTGAGCAACAAATGGAGATCATTGGTATGA-TCAGACATGAAAATGTAGCTGAGCT 1094
Query 577 TAAAGCCT-ACTACTATTCCAAAAACGATAAGCTTGCTGTTTATAGCTATTACAGTCAAG 635
|||| || ||||||| |||||| |||||||||| || |||||||||||||||| ||| |
Sbjct 1095 -AAAGGCTTACTACTACTCCAAAGACGATAAGCTCGCGGTTTATAGCTATTACAATCATG 1153
Query 636 GAAACCTATTCGAGATGCTGCACGG 660
||| ||| ||||| || ||||||||
Sbjct 1154 GAAGCCTCTTCGAAATACTGCACGG 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5