BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493828
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41600.1 | Symbols: BTI3, RTNLB4 | VIRB2-interacting protein... 1594 0.0
AT1G64090.2 | Symbols: RTNLB3 | Reticulan like protein B3 | chr... 483 2e-135
> AT5G41600.1 | Symbols: BTI3, RTNLB4 | VIRB2-interacting protein
3 | chr5:16636130-16637693 FORWARD LENGTH=1095
Length=1095
Score = 1594 bits (863), Expect = 0.0
Identities = 999/1063 (94%), Gaps = 15/1063 (1%)
Strand=Plus/Plus
Query 17 CACTCTTCAATCAGTAAAGGA-ATTTAGG---GTTTTTCTTCTTCTCAGAGGTTTCTAGA 72
|||||||||||||||||| || |||||| |||||||||||||| ||||||| ||||
Sbjct 32 CACTCTTCAATCAGTAAA-GAGTTTTAGGTTTTTTTTTCTTCTTCTCGGAGGTTTGTAGA 90
Query 73 ATCAACAACAATGGTGGAAGACCACAAGCACGAAGAATCGATCTTGGAGAAGATTGTTGA 132
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 91 ATCAACAAAAATGGTGGAAGACCACAAGCACGAGGAATCGATCTTGGAGAAGATTGTTGA 150
Query 133 GAAGATCCATGGCCATGGTGACTCATCTTCTTTGTCCGATTCCGACGACGATAAGAAATC 192
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 151 GAAGATCCATGGCCACGGTGACTCGTCTTCTCTGTCCGATTCCGACGACGATAAGAAATC 210
Query 193 TACGTCTTCTTCGTCGTCGTCCTTCAAGTCAAAGATTTATCGACTTTTCGGAAGGGAGAA 252
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 211 TACATCGTCTTCGTCGTCGTCCTTCAAGTCAAAGATTTACCGACTTTTCGGAAGGGAGAA 270
Query 253 ACCTGTTCACAAGGTTCTCGGTGGCGGAAAACCTGCTGATATATTCCTTTGGAGGAACAA 312
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 271 ACCTGTTCACAAGGTTCTCGGTGGTGGAAAACCTGCTGATATATTCCTTTGGAGGAACAA 330
Query 313 GAAGGTATCTGGTGGAGTCTTTGGTGCTGTAACTGCGTCTTGGGTATTATTCGAGTTATT 372
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 331 GAAGGTATCTGGTGGAGTCTTGGGTGCTGTAACTGCGTCTTGGGTCTTATTCGAGTTATT 390
Query 373 CGAATACCATCTCCTCGCTTTTCTCTGTCACTTTGCGATTTTTGCTCTTGCAGCATTGTT 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 CGAATACCATCTCCTCGCTTTTCTCTGTCACTTTGCGATTTTTGCTCTTGCAGCATTGTT 450
Query 433 CTTGTGGTCTAATGCTTGTACCTTTATCCACAAGGCAACTCCTCACATCCCGGAAGTTCA 492
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 451 CTTGTGGTCTAATGCTTGTACATTCATCCACAAGTCAACTCCTCACATCCCGGAAGTTCA 510
Query 493 CATCCCTGAAGATCCTGTTCTTCAACTTGTTTCTGGATTAAGGATTGAAATCAATCGTGG 552
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CATCCCTGAAGATCCTATTCTTCAACTTGTTTCTGGATTAAGGATTGAAATCAATCGTGG 570
Query 553 ATTGACCGTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGGTAAT 612
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TTTGACCCTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGGTAAT 630
Query 613 TGTTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTA 672
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTA 690
Query 673 TAGTGCTACTGTCCTTCTCTTCACCATTCCTGTGCTTTACGAAAAGTACGAGGACAAAGT 732
| |||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct 691 CACTGCTACTGTCCTTCTCTTCACCATTCCTGTACTCTACGAGAAGTATGAGGACAAAGT 750
Query 733 AGATGCCTTTGGCGAGAAGGCGATGAAGGAGATCAAGAAGCAATACGCAGTACTCGATGA 792
|||||||| ||| ||||||||||||| ||||||||| |||||||| |||||||| |||||
Sbjct 751 AGATGCCTATGGGGAGAAGGCGATGAGGGAGATCAAAAAGCAATATGCAGTACTTGATGA 810
Query 793 GAAGGTTTTGAGTAAGGTTC-TGAGCAAGATTCCAAGAGGAGCTCTGAACAAGAAGAAGG 851
|||||| ||| ||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 811 GAAGGTATTGCGTAAGGT-CATAAGCAAGATTCCAAGAGGAGCTCTGAACAAGAAGAAGG 869
Query 852 ATTAAGGAATGTAAGTTATTCTCTCATTGGAATCGTAGTAATGGTTCAAAACATGTTT-G 910
|||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| |
Sbjct 870 ATTAAGGAATGTGAGTTACTCTCTCATTGGAATCGTAGTAATGGTTCAAGACATGTTTTG 929
Query 911 TTAGAAGCTGTTGGTTGATAAACCCTTTGGTCT-TTGTTATTATTATTATGTTCATTATA 969
||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 930 TTAGAAGCTGTTGGTTGATAAACCCTTTGATCTCTTGTTATTATTAT---GTTCATTATA 986
Query 970 AACTTGGGGTTTTTAACCAAAATTATTTAGAGTATGAGAGAACACGGATGGATGTGTTAA 1029
|| |||||| ||||||| |||| |||||||| |||||||||||||||||||||| | ||
Sbjct 987 AATTTGGGGGTTTTAACTAAAAATATTTAGATTATGAGAGAACACGGATGGATGA-T-AA 1044
Query 1030 ATATTGTTGTTGGTTATTTGTCTTTAGTTAATTTCTCATCCTT 1072
|||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1045 TTATTGTTGTTAGTTATTTGTCTT-AGTTAATTTCTCATCCTT 1086
> AT1G64090.2 | Symbols: RTNLB3 | Reticulan like protein B3 | chr1:23789062-23790976
FORWARD LENGTH=1456
Length=1456
Score = 483 bits (261), Expect = 2e-135
Identities = 497/609 (82%), Gaps = 24/609 (4%)
Strand=Plus/Plus
Query 285 CTGCTGATATATTCCTTTGGAGGAACAAGAAGGTATCTGGTGGAGTCTTTGGTGCTGTAA 344
|||| || || ||||| |||||||||||||||||||| || ||||| || ||||||| ||
Sbjct 572 CTGCCGACATTTTCCTGTGGAGGAACAAGAAGGTATCAGGAGGAGTATTGGGTGCTGCAA 631
Query 345 CTGCGTCTTGGGTATTATTCGAGTTA-TTCGAATACCATCTCCTCGCTTTTC-TCTGTCA 402
||| || ||| | |||||||||||| || || ||| |||| ||| | || || | ||
Sbjct 632 CTGTTTCCTGGATCTTATTCGAGTTACTT-GAGTACAATCTTCTCAC-ACTCTTCGGCCA 689
Query 403 C-TTTGCGATTTTTGCTCTTGCAGCATTGTTCTTGTGGTCTAATGCTTGTACCTTTATCC 461
| ||| | ||| ||||||| |||| ||||||||||||||||| |||| ||||||| || |
Sbjct 690 CATTT-CAATTCTTGCTCTCGCAGTATTGTTCTTGTGGTCTAGTGCTAGTACCTTCATTC 748
Query 462 ACAAGGCAACTCCTCACATCCCGGAAGTTCACATCCCTGAAGATCCTGTTCTTCAACTTG 521
||||| || ||| ||| ||||| |||||||||||||| || ||| ||||||||| ||||
Sbjct 749 ACAAGTCACCTCTTCATATCCCTGAAGTTCACATCCCCGAGGATGTTGTTCTTCAGCTTG 808
Query 522 TTTCTGGATTAAGGATTGAAATCAATCGTGGATTGACCGTTCTTAGGAACATTGCATCAG 581
||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 809 CTTCTGGATTAAGGATTGAAATCAATCGTGGATTTACTGTTCTTAGGGACATTGCATCAG 868
Query 582 GAAAAGATGTCAAGAAATTTATCCTGGTAATTGTTGGCTTGTGGGTTTTGTCCATTA-TT 640
||| |||| | ||||| ||| | |||| |||| ||| || ||||||||||||| | ||
Sbjct 869 GAAGAGATCTTAAGAAGTTTCTGTTGGTGATTGCTGGTTTATGGGTTTTGTCCAA-AGTT 927
Query 641 GGCAGCTGCTACAACTTCTTGACATTGTTCTATAGT-GCTACTGTCCTTCTCTTCACCAT 699
|| |||| || |||||||||||| || |||| | | || ||||| ||||||||||| ||
Sbjct 928 GGTAGCTCCTGCAACTTCTTGACCTTAATCTACA-TCGCAACTGTACTTCTCTTCACGAT 986
Query 700 TCCTGTGCTTTACGAAAAGTACGAGGACAAAGTAGATGCCTTTGGCGAGAAGGCGATGAA 759
||| ||||||||||| ||||| || || |||||||||| |||||| || ||||||||||
Sbjct 987 TCCCGTGCTTTACGAGAAGTATGAAGATAAAGTAGATGACTTTGGTGAAAAGGCGATGAG 1046
Query 760 GGAGATCAAGAAGCAATACGCAGTACT-CGATGAGAAGGTTTTGAGTAAGGTTCTGAGCA 818
|||||||||||||||||||| | | | ||| | |||||||||||||||||| ||||||
Sbjct 1047 GGAGATCAAGAAGCAATACGTGG-AGTTCGACGTGAAGGTTTTGAGTAAGGTGATGAGCA 1105
Query 819 AGATTCC-AAGAGGAGC-TCTGA----A-CAAGAAGAAGGATTA-AG-GAATGTAAGTTA 869
| ||||| || |||||| | || | ||||||||| ||||| || | ||||||||
Sbjct 1106 AAATTCCTAA-AGGAGCCTTTGCCTTTATCAAGAAGAAAGATTAGAGAGTGTGTAAGTT- 1163
Query 870 TTCTCTCAT 878
| |||||||
Sbjct 1164 T-CTCTCAT 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5