BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493828 Length=1072 Score E Sequences producing significant alignments: (Bits) Value AT5G41600.1 | Symbols: BTI3, RTNLB4 | VIRB2-interacting protein... 1594 0.0 AT1G64090.2 | Symbols: RTNLB3 | Reticulan like protein B3 | chr... 483 2e-135 > AT5G41600.1 | Symbols: BTI3, RTNLB4 | VIRB2-interacting protein 3 | chr5:16636130-16637693 FORWARD LENGTH=1095 Length=1095 Score = 1594 bits (863), Expect = 0.0 Identities = 999/1063 (94%), Gaps = 15/1063 (1%) Strand=Plus/Plus Query 17 CACTCTTCAATCAGTAAAGGA-ATTTAGG---GTTTTTCTTCTTCTCAGAGGTTTCTAGA 72 |||||||||||||||||| || |||||| |||||||||||||| ||||||| |||| Sbjct 32 CACTCTTCAATCAGTAAA-GAGTTTTAGGTTTTTTTTTCTTCTTCTCGGAGGTTTGTAGA 90 Query 73 ATCAACAACAATGGTGGAAGACCACAAGCACGAAGAATCGATCTTGGAGAAGATTGTTGA 132 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 91 ATCAACAAAAATGGTGGAAGACCACAAGCACGAGGAATCGATCTTGGAGAAGATTGTTGA 150 Query 133 GAAGATCCATGGCCATGGTGACTCATCTTCTTTGTCCGATTCCGACGACGATAAGAAATC 192 ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| Sbjct 151 GAAGATCCATGGCCACGGTGACTCGTCTTCTCTGTCCGATTCCGACGACGATAAGAAATC 210 Query 193 TACGTCTTCTTCGTCGTCGTCCTTCAAGTCAAAGATTTATCGACTTTTCGGAAGGGAGAA 252 ||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 211 TACATCGTCTTCGTCGTCGTCCTTCAAGTCAAAGATTTACCGACTTTTCGGAAGGGAGAA 270 Query 253 ACCTGTTCACAAGGTTCTCGGTGGCGGAAAACCTGCTGATATATTCCTTTGGAGGAACAA 312 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 271 ACCTGTTCACAAGGTTCTCGGTGGTGGAAAACCTGCTGATATATTCCTTTGGAGGAACAA 330 Query 313 GAAGGTATCTGGTGGAGTCTTTGGTGCTGTAACTGCGTCTTGGGTATTATTCGAGTTATT 372 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 331 GAAGGTATCTGGTGGAGTCTTGGGTGCTGTAACTGCGTCTTGGGTCTTATTCGAGTTATT 390 Query 373 CGAATACCATCTCCTCGCTTTTCTCTGTCACTTTGCGATTTTTGCTCTTGCAGCATTGTT 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 CGAATACCATCTCCTCGCTTTTCTCTGTCACTTTGCGATTTTTGCTCTTGCAGCATTGTT 450 Query 433 CTTGTGGTCTAATGCTTGTACCTTTATCCACAAGGCAACTCCTCACATCCCGGAAGTTCA 492 ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| Sbjct 451 CTTGTGGTCTAATGCTTGTACATTCATCCACAAGTCAACTCCTCACATCCCGGAAGTTCA 510 Query 493 CATCCCTGAAGATCCTGTTCTTCAACTTGTTTCTGGATTAAGGATTGAAATCAATCGTGG 552 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 CATCCCTGAAGATCCTATTCTTCAACTTGTTTCTGGATTAAGGATTGAAATCAATCGTGG 570 Query 553 ATTGACCGTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGGTAAT 612 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 TTTGACCCTTCTTAGGAACATTGCATCAGGAAAAGATGTCAAGAAATTTATCCTGGTAAT 630 Query 613 TGTTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTA 672 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 TGCTGGCTTGTGGGTTTTGTCCATTATTGGCAGCTGCTACAACTTCTTGACATTGTTCTA 690 Query 673 TAGTGCTACTGTCCTTCTCTTCACCATTCCTGTGCTTTACGAAAAGTACGAGGACAAAGT 732 | |||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||| Sbjct 691 CACTGCTACTGTCCTTCTCTTCACCATTCCTGTACTCTACGAGAAGTATGAGGACAAAGT 750 Query 733 AGATGCCTTTGGCGAGAAGGCGATGAAGGAGATCAAGAAGCAATACGCAGTACTCGATGA 792 |||||||| ||| ||||||||||||| ||||||||| |||||||| |||||||| ||||| Sbjct 751 AGATGCCTATGGGGAGAAGGCGATGAGGGAGATCAAAAAGCAATATGCAGTACTTGATGA 810 Query 793 GAAGGTTTTGAGTAAGGTTC-TGAGCAAGATTCCAAGAGGAGCTCTGAACAAGAAGAAGG 851 |||||| ||| ||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 811 GAAGGTATTGCGTAAGGT-CATAAGCAAGATTCCAAGAGGAGCTCTGAACAAGAAGAAGG 869 Query 852 ATTAAGGAATGTAAGTTATTCTCTCATTGGAATCGTAGTAATGGTTCAAAACATGTTT-G 910 |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct 870 ATTAAGGAATGTGAGTTACTCTCTCATTGGAATCGTAGTAATGGTTCAAGACATGTTTTG 929 Query 911 TTAGAAGCTGTTGGTTGATAAACCCTTTGGTCT-TTGTTATTATTATTATGTTCATTATA 969 ||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| Sbjct 930 TTAGAAGCTGTTGGTTGATAAACCCTTTGATCTCTTGTTATTATTAT---GTTCATTATA 986 Query 970 AACTTGGGGTTTTTAACCAAAATTATTTAGAGTATGAGAGAACACGGATGGATGTGTTAA 1029 || |||||| ||||||| |||| |||||||| |||||||||||||||||||||| | || Sbjct 987 AATTTGGGGGTTTTAACTAAAAATATTTAGATTATGAGAGAACACGGATGGATGA-T-AA 1044 Query 1030 ATATTGTTGTTGGTTATTTGTCTTTAGTTAATTTCTCATCCTT 1072 |||||||||| |||||||||||| |||||||||||||||||| Sbjct 1045 TTATTGTTGTTAGTTATTTGTCTT-AGTTAATTTCTCATCCTT 1086 > AT1G64090.2 | Symbols: RTNLB3 | Reticulan like protein B3 | chr1:23789062-23790976 FORWARD LENGTH=1456 Length=1456 Score = 483 bits (261), Expect = 2e-135 Identities = 497/609 (82%), Gaps = 24/609 (4%) Strand=Plus/Plus Query 285 CTGCTGATATATTCCTTTGGAGGAACAAGAAGGTATCTGGTGGAGTCTTTGGTGCTGTAA 344 |||| || || ||||| |||||||||||||||||||| || ||||| || ||||||| || Sbjct 572 CTGCCGACATTTTCCTGTGGAGGAACAAGAAGGTATCAGGAGGAGTATTGGGTGCTGCAA 631 Query 345 CTGCGTCTTGGGTATTATTCGAGTTA-TTCGAATACCATCTCCTCGCTTTTC-TCTGTCA 402 ||| || ||| | |||||||||||| || || ||| |||| ||| | || || | || Sbjct 632 CTGTTTCCTGGATCTTATTCGAGTTACTT-GAGTACAATCTTCTCAC-ACTCTTCGGCCA 689 Query 403 C-TTTGCGATTTTTGCTCTTGCAGCATTGTTCTTGTGGTCTAATGCTTGTACCTTTATCC 461 | ||| | ||| ||||||| |||| ||||||||||||||||| |||| ||||||| || | Sbjct 690 CATTT-CAATTCTTGCTCTCGCAGTATTGTTCTTGTGGTCTAGTGCTAGTACCTTCATTC 748 Query 462 ACAAGGCAACTCCTCACATCCCGGAAGTTCACATCCCTGAAGATCCTGTTCTTCAACTTG 521 ||||| || ||| ||| ||||| |||||||||||||| || ||| ||||||||| |||| Sbjct 749 ACAAGTCACCTCTTCATATCCCTGAAGTTCACATCCCCGAGGATGTTGTTCTTCAGCTTG 808 Query 522 TTTCTGGATTAAGGATTGAAATCAATCGTGGATTGACCGTTCTTAGGAACATTGCATCAG 581 ||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 809 CTTCTGGATTAAGGATTGAAATCAATCGTGGATTTACTGTTCTTAGGGACATTGCATCAG 868 Query 582 GAAAAGATGTCAAGAAATTTATCCTGGTAATTGTTGGCTTGTGGGTTTTGTCCATTA-TT 640 ||| |||| | ||||| ||| | |||| |||| ||| || ||||||||||||| | || Sbjct 869 GAAGAGATCTTAAGAAGTTTCTGTTGGTGATTGCTGGTTTATGGGTTTTGTCCAA-AGTT 927 Query 641 GGCAGCTGCTACAACTTCTTGACATTGTTCTATAGT-GCTACTGTCCTTCTCTTCACCAT 699 || |||| || |||||||||||| || |||| | | || ||||| ||||||||||| || Sbjct 928 GGTAGCTCCTGCAACTTCTTGACCTTAATCTACA-TCGCAACTGTACTTCTCTTCACGAT 986 Query 700 TCCTGTGCTTTACGAAAAGTACGAGGACAAAGTAGATGCCTTTGGCGAGAAGGCGATGAA 759 ||| ||||||||||| ||||| || || |||||||||| |||||| || |||||||||| Sbjct 987 TCCCGTGCTTTACGAGAAGTATGAAGATAAAGTAGATGACTTTGGTGAAAAGGCGATGAG 1046 Query 760 GGAGATCAAGAAGCAATACGCAGTACT-CGATGAGAAGGTTTTGAGTAAGGTTCTGAGCA 818 |||||||||||||||||||| | | | ||| | |||||||||||||||||| |||||| Sbjct 1047 GGAGATCAAGAAGCAATACGTGG-AGTTCGACGTGAAGGTTTTGAGTAAGGTGATGAGCA 1105 Query 819 AGATTCC-AAGAGGAGC-TCTGA----A-CAAGAAGAAGGATTA-AG-GAATGTAAGTTA 869 | ||||| || |||||| | || | ||||||||| ||||| || | |||||||| Sbjct 1106 AAATTCCTAA-AGGAGCCTTTGCCTTTATCAAGAAGAAAGATTAGAGAGTGTGTAAGTT- 1163 Query 870 TTCTCTCAT 878 | ||||||| Sbjct 1164 T-CTCTCAT 1171 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52509770070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5