BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493831
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41570.1 | Symbols: WRKY24, ATWRKY24 | WRKY DNA-binding prot... 837 0.0
AT1G64000.1 | Symbols: WRKY56, ATWRKY56 | WRKY DNA-binding prot... 387 9e-107
> AT5G41570.1 | Symbols: WRKY24, ATWRKY24 | WRKY DNA-binding protein
24 | chr5:16624214-16625977 FORWARD LENGTH=834
Length=834
Score = 837 bits (453), Expect = 0.0
Identities = 519/550 (94%), Gaps = 8/550 (1%)
Strand=Plus/Plus
Query 1 ATAACAATGGAAAGAGAAGACATAAATCATATGTTAA---GCCTAGATGTCGAAAACAAC 57
||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1 ATAACAATGGACAGAGAAGACATAAATCCTATGTTAAGCCGCCTAGATGTCGAAAACAAC 60
Query 58 AACACCTTCTCTGCCTTTGTAGACAAAACCCTAATGATGATGCCTCCGTTAACATTTTCC 117
|||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 61 AACACCTTCTCTTCCTTTGTAGACAAAACCCTAATGATGATGCCTCCATCAACATTTTCC 120
Query 118 GGCGAAGTAGAGCCTTCCTCTTCTTCTTCTTGGTATCCAGAAAGCTTTCATGTGCATGTG 177
|| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 GGTGAAGTGGAACCTTCATCTTCTTCTTCTTGGTATCCAGAAAGCTTTCATGTGCATGCG 180
Query 178 CCGCCACCGGCACCTGAGAATGATCAAATAGgagagaaagggaagaagaaag-agaaaga 236
|||||| |||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 181 CCGCCATTACCACCTGAGAATGATCAAATAGGTGAGAAAGGGAAG--G--AGCTGAAAGA 236
Query 237 gaagagaTCGAGGAAAGTTCCAAGGATTGCGTTTCAAACGAGGAGTGATGATGATGTTCT 296
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 237 GAAGAGATCGAGGAAAGTTCCAAGGATTGCGTTTCATACGAGGAGCGATGATGATGTTCT 296
Query 297 TGATGATGGTTATCGTTGGCGAAAATATGGCCAGAAATCTGTCAAGCACAATGCTCATCC 356
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 TGATGATGGTTATCGTTGGCGAAAATATGGGCAGAAATCTGTCAAGCACAATGCTCATCC 356
Query 357 CAGGAGCTATTACAGATGTACGTACCACACATGCAACGTGAAGAAACAAGTGCAGAGATT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAGGAGCTATTACAGATGTACGTACCACACATGCAACGTGAAGAAACAAGTGCAGAGATT 416
Query 417 GGCAAAAGATCCAAACGTCGTCGTAACGACCTACGAAGGCATTCATAACCATCCTTGTGA 476
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 417 GGCAAAAGATCCAAACGTCGTCGTAACGACCTACGAAGGCGTTCATAACCATCCTTGTGA 476
Query 477 GAAGCTCATGGAGACTCTTAATCCTCTCCTCAGGCAACTTCAGTTCCTCTCCAGTTTCTC 536
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 477 GAAGCTCATGGAGACTCTTAATCCTCTTCTCAGGCAACTCCAGTTCCTCTCCAGTTTCTC 536
Query 537 TAATCTCTGA 546
|||||| |||
Sbjct 537 TAATCTTTGA 546
> AT1G64000.1 | Symbols: WRKY56, ATWRKY56 | WRKY DNA-binding protein
56 | chr1:23747304-23749053 FORWARD LENGTH=888
Length=888
Score = 387 bits (209), Expect = 9e-107
Identities = 249/269 (93%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 259 AGGATTGCGTTTCAAACGAGGAGTGATGATGATGTTCTTGATGATGGTTATCGTTGGCGA 318
||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AGGATAGCTTTTCATACAAGGAGTGATGATGATGTTCTTGATGATGGTTATCGTTGGCGA 490
Query 319 AAATATGGCCAGAAATCTGTCAAGCACAATGCTCATCCCAGGAGCTATTACAGATGTACG 378
|| || || ||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 491 AAGTACGGTCAGAAATCTGTCAAGAACAATGCTCATCCCAGGAGCTATTATAGATGTACA 550
Query 379 TACCACACATGCAACGTGAAGAAACAAGTGCAGAGATTGGCAAAAGATCCAAACGTCGTC 438
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 551 TACCACACATGCAACGTGAAGAAACAAGTGCAAAGACTGGCAAAAGATCCAAACGTTGTC 610
Query 439 GTAACGACCTACGAAGGCATTCATAACCATCCTTGTGAGAAGCTCATGGAGACTCTTAAT 498
||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 611 GTAACAACCTACGAAGGTGTTCATAATCATCCTTGTGAGAAGCTCATGGAGACTCTTAGC 670
Query 499 CCTCTCCTCAGGCAACTTCAGTTCCTCTC 527
|||||||| ||||||||||||||||||||
Sbjct 671 CCTCTCCTTAGGCAACTTCAGTTCCTCTC 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5