BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493832
Length=418
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41560.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 571 2e-162
> AT5G41560.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin
ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16621251-16622656
REVERSE LENGTH=519
Length=519
Score = 571 bits (309), Expect = 2e-162
Identities = 374/404 (93%), Gaps = 9/404 (2%)
Strand=Plus/Plus
Query 1 ACGATTCCAATGGCGTCGATTCTGGGTGATTTACCTTCCTTCGATCCTCACAATTTCAGT 60
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 29 ACGATTCCAATGGCGTCGATTCTGGGTGATTTGCCTTCCTTTGATCCTCACAATTTCAGT 88
Query 61 CAACATCGTCCCTCCGATCCTTCTAATCCCTCTAGGATGGTTCCTACCACCTATCGTCCT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 89 CAACATCGTCCCTCCGATCCTTCTAATCCCTCTAAGATGGTTCCTACCACCTATCGTCCT 148
Query 121 ACTCACAATCGTACACTTCCACCACCAGATCAAGTGATAACTACAGAAGTGAAAAACATA 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACTCACAACCGTACACTTCCACCACCAGATCAAGTGATAACTACAGAAGTGAAAAACATT 208
Query 181 CTGATACGCAGCTTCTATCAACGAGCTGAAGAAAAGTTAAGACCAAAGAGACCGGCTACA 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CTTATACGCAGCTTCTATCAACGAGCTGAAGAAAAGTTAAGACCAAAGAGACCGGCTACA 268
Query 241 GATCATCTGGCAGCCGAGCACGTGAACAAGCATTTCCGCGCCGCGTCTTCTTCATCTTCT 300
|||||||||||||| ||||||||||||||||||||||| || ||||||||||| || |||
Sbjct 269 GATCATCTGGCAGCGGAGCACGTGAACAAGCATTTCCGTGCTGCGTCTTCTTCTTCATCT 328
Query 301 ACTCAGGGCTTATAAAAAACTTACCCTGGTGA-GCCTATGATAATGGTCATTGTGTATGA 359
|||||||| |||||||||||||| | | | |||||| | |||||||||| |||||||
Sbjct 329 ACTCAGGGTTTATAAAAAACTTAAG-T--TCAAGCCTATAACAATGGTCATT-TGTATGA 384
Query 360 GT---TCTTATTAGCATTTTCAATGTAGAGAAAGAAAGA-AAGA 399
|| ||||||||| ||||||||||||| ||| ||||| ||||
Sbjct 385 GTACCTCTTATTAGTGTTTTCAATGTAGAAAAAAAAAGATAAGA 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19805493106
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5