BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493833
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41520.1 | Symbols: | RNA binding Plectin/S10 domain-contai... 1288 0.0
> AT5G41520.1 | Symbols: | RNA binding Plectin/S10 domain-containing
protein | chr5:16609153-16610692 REVERSE LENGTH=876
Length=876
Score = 1288 bits (697), Expect = 0.0
Identities = 818/873 (94%), Gaps = 21/873 (2%)
Strand=Plus/Plus
Query 1 GCGGCTTTAGTCGAAATTAGGGTTTCGCGTTAAGGAGAAGAAGAGAAAGCTAAACACATA 60
||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 1 GCGGCTTCAGTCGAAATTAGGGTTTCGCGTT-AGGAGAAGAAGTTAAAGCAAAACACATA 59
Query 61 CAAACGCAGTCACCTTCTCTGTCGCCTCCTTCTTCAATCTCATCGCAATCATGATCATAT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 60 CAAACGCAGTCACCTTCTCTATCGCCTCCTTCTTCAATCTCATCGCAATCATGATCATAT 119
Query 121 CAGAGAAGAATCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAGGGTGTTTTGTTTGCTA 180
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAGGGTGTTTTGTTTGCTA 179
Query 181 AAAAGGATTTCAATTTACCACAACATCCTTTGATTGAGAGTGTTCCAAATCTGCAAGTTA 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAAGGATTTCAACTTACCACAACATCCTTTGATTGAGAGTGTTCCAAATCTGCAAGTTA 239
Query 241 TCAAGTTGATGCAGAGTTTCAAATCTAAGGAATATGTGAGAGAGACTTTTGCTTGGATGC 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 TCAAGTTGATGCAGAGTTTCAAATCTAAGGAATATGTGAGAGAGACCTTTGCTTGGATGC 299
Query 301 ATTACTACTGGTTCCTCACAAATGAAGGCATTGACTTTCTCAGGACTTACCTTAATCTCC 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 ATTACTACTGGTTCCTCACAAATGAAGGTATTGACTTTCTCAGGACTTACCTTAATCTCC 359
Query 361 CTTCTGAGATTGTTCCTGCTACTTTGAAGAAGCAACAGAAGCCTCTTGGTCGACCTTTCG 420
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 CATCTGAGATTGTTCCTGCTACTTTGAAGAAGCAACAGAAGCCTCTTGGTCGACCTTTTG 419
Query 421 GAGGTGGTG---ACCGTCCCCGCAGTGGTCCACCTCGTGGTGATGGAGAGAGGAAGTTTG 477
||||||||| |||||||||| ||| || |||||||||||||||||||||| |||||
Sbjct 420 GAGGTGGTGGTGACCGTCCCCG---TGGCCCTCCTCGTGGTGATGGAGAGAGGAGGTTTG 476
Query 478 GTGACAGAGATGCATACCGTGGAGGTCCGAGATCAGGTGGAGAGTTTGGTGACAAGAG-T 536
|||||||||||| ||||||||||||||| | |||||||||||||| |||||||||| | |
Sbjct 477 GTGACAGAGATGGATACCGTGGAGGTCCTAAATCAGGTGGAGAGTATGGTGACAAG-GCT 535
Query 537 GGAGCTCCTGCTGATTACAACCCTGCCTTCAAGGGAGGAGCTGGTGGAGCTAGGCAAGGG 596
||||| |||||||||||| | |||| ||||| ||| ||||||||||||||||||||||||
Sbjct 536 GGAGCACCTGCTGATTACCAGCCTGGCTTCAGGGGTGGAGCTGGTGGAGCTAGGCAAGGG 595
Query 597 TTTGGTCGTGGAGCCGGTGGTTTTGGTGGTGGTGCTGGTCCAGCTGCTGGATCCGATCTT 656
|||||||||||||| |||||||| ||||||||||||| | || | ||| ||||||
Sbjct 596 TTTGGTCGTGGAGCTGGTGGTTTCGGTGGTGGTGCTG--C----TG--G-ATCTGATCTT 646
Query 657 CCTTGAAAGGGACTTTCTTGTTTCTTTTTGGTCTTATTTAAGGTTACATAGTACCTTTGA 716
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CCTTGAAAAGGACTTTCTTGTTTCTTTTTGGTCTTATTTAAGGTTACATAGTACCTTTGA 706
Query 717 TTTGAGAACGAATGTGTCTTTTGGAACTTTGTTTCTTTCTCTAAA-CCATTTCACAATAT 775
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 707 TTTGAGAACGAATGTGTCTTTTGGAACTTTGTTTCTTTCTCTAAAACCATCTCACAATAT 766
Query 776 GATTGTTTTTTACGGTAGAATTTTATGAAGAAATGTTGGATCGTTACATGAATCTTTTTA 835
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GATTGTTTTTTACGTTAGAATTTTATGAAGAAATGTTGGATCGTTACATGAATCTTTTTA 826
Query 836 CACTCTGCCCTCCTTTTTAAATTCTCCTATTTA 868
|||| | || ||| |||||||||||||||||||
Sbjct 827 CACTGT-CC-TCCATTTTAAATTCTCCTATTTA 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5