BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493835
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41470.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 1413 0.0
> AT5G41470.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein | chr5:16593953-16595568 FORWARD LENGTH=983
Length=983
Score = 1413 bits (765), Expect = 0.0
Identities = 918/989 (93%), Gaps = 22/989 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCCATGGTTAATGTTATGAGTCCAATAGTTACGAGAAATCTCATTACCAAATTC 60
||||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCCTCCATGGTTAATGTTACGAGTATAATAGTTACGAGAAATCTCATCACCAAATTC 60
Query 61 AAAACTCAACGGCTGAAACCGGATCTACCTTCTCTACAACATTCCAGCTGGTTCAATGCA 120
||||||| |||||| |||| ||||||||||||||||||||||| ||| ||| ||||||
Sbjct 61 AAAACTCCACGGCTCAAACTAGATCTACCTTCTCTACAACATTCTAGCCAGTTGAATGCA 120
Query 121 ATCAAGAATGATCCAAGAAAGATGATAAATAAGTATGCTTCAAGGAGAAATATCGTGGTT 180
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 ATCAAGAATGATCCAATAAAAATGATAAATAAGTACGCTTCAAGGAGAAATATCGTGGTT 180
Query 181 TCATGTTTAGATCGACCTAATTCTAGGCCTAATCAAATCTCTGGGTATGATGCTGTTATG 240
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCATGTTTGGATCGACCTAACTCTAGGCCGAATCAAATCTCTGGGTATGATGCTGTTATG 240
Query 241 AAATTTTATTCCTCTATAAACGAGAAGAATCAAGATCAATTAAGTAGTTGTATTTCAAGC 300
||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 241 AAATTTTATTCCTCTATAAACGAGAAGAATCAAGACCAATTAAGTAGTTGCATCTCCAGC 300
Query 301 GATTGTTTTATCGATGATTTCTCCTTTTCAAAGCCTTTTCGA-GGAAGAAAAGAAGCTAT 359
||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||
Sbjct 301 GATTGTTTTATCGATGATTTCTCCTTTCCAAAGCCTTTTCGAGGGAA-ACAAGAAGCTAT 359
Query 360 GAAGTTCTTTGAAGAACTTGTGAAGAGTATGGGACAAAACGTTAAGTTTTGTGTTGAAAA 419
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGAGTTCTTCGAAGAACTTGTGAAGAGTATGGGACAAAACGTTAAGTTTTGTGTTGAAAA 419
Query 420 TGTATGTGAAGGAGATGGACATAGTGCTGCTGTTAATTGGCATCTTGAATGGAAAGGACG 479
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGTGTGTGAAGGTGATGGACATAGTGCTGCTGTTAATTGGCATCTTGAATGGAAAGGACG 479
Query 480 AAAAATTCCCTTTACAAGAGGATGTAGCTTCTATGAATTTACAGATGAAGGAGGAAAACT 539
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 480 AAAAATTCCCTTTACAAGAGGATGTAGCTTCTATGAATTTATAGATGAAGGAGGAAGACT 539
Query 540 GGTTATAAGAAACGCGAGGATTTTGATTGAATCGCCAATTAAACCGGGAGGAATCACATT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 GGTTATAAGAAACGCGAGGATTTTGATTGAATCGCCAATTAAACCGGGAGGAATAACATT 599
Query 600 GAGCCTGTTAAAGAACATCACCTTCTTGTTCGACGAATTTCCAAAAGGAGCTGAGTTGTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGCCTGTTAAAGAACATCACCTTCTTGTTCGACGAATTTCCAAAAGGAGCTGAGTTGTT 659
Query 660 TTTGGAGAAACCTTATGCTATAATCCAAGCAACAATACAAATTTATGGACTATTTTTGGC 719
|||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct 660 TTTGGAAAAACCTTATGCTATAATCCAAGCAGCAATTCGAATTTATGGACTATTTTTGGC 719
Query 720 GCCACTCGTAAACCATGTAATGGCAAGCTACCTGAAGCTAT-TAAGAAACATGGCCGAGT 778
||||||| ||||||||||||||||||||||||||||||| | |||| || |||||||| |
Sbjct 720 GCCACTCATAAACCATGTAATGGCAAGCTACCTGAAGCT-TCTAAGCAATATGGCCGAAT 778
Query 779 TTTTCTTATTAGTCGTGAAAATTATCATCAAAATTCGAAACCTCTTCTTCAAATAGAAGA 838
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTTCTTATTGGTCGTCAAAATTATCATCAAAATTCGAAACCTCTTCTTCAAATAGAAGA 838
Query 839 AACAA----T---TA-TTCT-T---AA-TCATCTTTTCCCTATATTTGATGATATTATTT 885
||||| | || || | | || ||||||||| ||||||||||||||||||||||
Sbjct 839 AACAAGGACTGCATACTTTTATTCTAAATCATCTTTTTCCTATATTTGATGATATTATTT 898
Query 886 TACTAACCCCATTATATGATTATTTGTATTTTAAAATTaaaaaaaaaCATTAACAATCTT 945
|||||||| | ||||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct 899 TACTAACCG--T-ATATGATTATTTGTACTTTCAAA--AAAAAAAAACATTAACAATCTT 953
Query 946 GAGGGGTTGGTAAATAGAGATATTAAATT 974
||||||||||||| |||||||||||||||
Sbjct 954 GAGGGGTTGGTAATTAGAGATATTAAATT 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5