BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493837
Length=2443
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41410.1 | Symbols: BEL1 | POX (plant homeobox) family prote... 3895 0.0
AT2G27220.2 | Symbols: BLH5 | BEL1-like homeodomain 5 | chr2:11... 95.3 2e-18
> AT5G41410.1 | Symbols: BEL1 | POX (plant homeobox) family protein
| chr5:16580044-16584008 FORWARD LENGTH=2454
Length=2454
Score = 3895 bits (2109), Expect = 0.0
Identities = 2354/2466 (95%), Gaps = 41/2466 (2%)
Strand=Plus/Plus
Query 1 AAGCCACACAATCTCTTTTCctctctctctctctctctgttatatctcttctgtttaatt 60
||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCCACACAATCTC-TTT--TCT-TCTCTCTCTCTCTGTTATATCTCTTCTGTTTAATT 56
Query 61 cttttattcttcttcgtctatcttcttctcctataatctcttttctctctccctcttcAC 120
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 57 CTTTTATTCTTCTTCGTCTA---TCTTCTCCTATAATCTC--TTCTCTCTCCCTCTTCAC 111
Query 121 CTAAAGAATAAGAAGAAAAATAATTCACACATCTTTATGCAAACTACTTTCTTGTAGGGT 180
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 112 CTAAAGAATAAGAAGAAAAATAATT--CACATCTTTATGCAAACTACTTTCTTGTAGGGT 169
Query 181 TTTAGGAGCTATCTCTATTGACTTGGTTCTGATACAAAGTTTTGTAGTTTTCTTTGGCTA 240
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||
Sbjct 170 TTTAGGAGCTATCTCTATTGTCTTGGTTCTGATACAAAGTTTTGTAATTTTC-ATGG-TA 227
Query 241 --AAAAGATTTGCCTTTCTATTTTGTTTATTGATTCTTTTTAACTTTATCTTGGAGATGG 298
| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 228 TGAGAAGATTTGCCTTTCTATTTTGTTTATTGGTTCTTTTTAACTTTTTCTTGGAGATGG 287
Query 299 GTTCTTGTAGATCTTAATGAAACTCCTGTTTTTGTCCCAAAAAGAGttttcttttttctt 358
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 288 GTTCTTGTAGATCTTAATGAAACTTCTGTTTTTGTCCCAAAAAGAGTTTTCTTTTTTCTT 347
Query 359 ctcttctttttgggttttcAATTCTTAAGAGACATGGCAAGAGATCAGTTCTATGGTCAC 418
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 348 CTCTTCTTTTTGGGTTTTCAATTCTTGAGAGACATGGCAAGAGATCAGTTCTATGGTCAC 407
Query 419 AATAACCATCATCATCAAGAGCAACAACATCAAATGATTAATCAGATCCAAGGGTTTGAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AATAACCATCATCATCAAGAGCAACAACATCAAATGATTAATCAGATCCAAGGGTTTGAT 467
Query 479 GAGACAAACCAAAACCCAACCGGTCATCATCATCATTATAATCATCAGATCTTTGGCTCA 538
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 468 GAGACAAACCAAAACCCAACCG---ATCATCATCATTACAATCATCAGATCTTTGGCTCA 524
Query 539 AACTCCAACATGGGTATGATGATAGACTTCTCCAAGCAACAACAGATTAGGATGACAAGT 598
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 525 AACTCCAACATGGGTATGATGATAGACTTCTCTAAGCAACAACAGATTAGGATGACAAGT 584
Query 599 GGTCCGGatcatcatcatcatcatcatcaGACAAGTGGTGGTACTGATCAGAATCAGCTT 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GGTTCGGATCATCATCATCATCATCATCAGACAAGTGGTGGTACTGATCAGAATCAGCTT 644
Query 659 CTGGAAGATTCTTCATCTACCATGAGACTATGCAATGTTAATAATGATTTCCCAAGTGAA 718
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 645 CTGGAAGATTCTTCATCTGCCATGAGACTATGCAATGTTAATAATGATTTCCCAAGTGAA 704
Query 719 GTAAATGATGAGAGACCACCACAAAGACCAAGCCAAGGTCTTTCCCTTTCTCTCTCATCT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 705 GTAAATGATGAGAGACCACCACAAAGACCAAGCCAAGGTCTTTCCCTTTCTCTCTCCTCT 764
Query 779 TCAAATCCTACAAGCATCAGTCTCCAATCTTTCGAACTCAGACCCCAACAACAAC--CT- 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 765 TCAAATCCTACAAGCATCAGTCTCCAATCTTTCGAACTCAGACCCCAACAACAACAACAA 824
Query 836 CAAGGGTATTCCGGTAA-A--TCAACACATCATCAGAATCTCCAACACACCCAgatgatg 892
||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct 825 CAAGGGTATTCCGGTAATAAATCAACACAACATCAGAATCTCCAACACACGCAGATGATG 884
Query 893 atgatgatgatgaATAGTCACCACCAAaacaacaacaa---caa-ca--a---TCAT--- 940
|||||||||||||||||||||||||||||||||||||| ||| || | ||||
Sbjct 885 ATGATGATGATGAATAGTCACCACCAAAACAACAACAATAACAATCATCAGCATCATAAT 944
Query 941 CATCATCAGTTTCAGATTGGGAGTTCCAAGTATTTGAGTCCAGCTCAAGAGCTACTAAGT 1000
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 945 CATCATCAGTTTCAGATTGGGAGTTCCAAGTATTTGAGTCCAGCTCAAGAGCTACTGAGT 1004
Query 1001 GAGTTTTGCAGTCTTGGAGTAAAGGAAAGTGATGAAGAAGTGATGATGATGAAGAATAAG 1060
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1005 GAGTTTTGCAGTCTTGGAGTAAAGGAAAGCGATGAAGAAGTGATGATGATGAAGCATAAG 1064
Query 1061 AGGAAGCAAAAGGGTAAACAACAAGAAGAGTGGGACACAAGTCATCACAACAACAATGAT 1120
| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1065 AAGAAGCAAAAGGGTAAACAACAAGAAGAGTGGGACACAAGTCACCACAGCAACAATGAT 1124
Query 1121 CAACATGACCAATCTGCAACTACTTCTTCAAAGAAACATGTTCCTCCACTACACTCTCTT 1180
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1125 CAACATGACCAATCTGCGACTACTTCTTCAAAGAAACATGTTCCACCACTTCACTCTCTT 1184
Query 1181 GAGTTTATGGAACTTCAGAAAAGAAAAGCCAAGTTGCTCTCCATGCTCGAAGAGCTTAAA 1240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GAGTTCATGGAACTTCAGAAAAGAAAAGCCAAGTTGCTCTCCATGCTCGAAGAGCTTAAA 1244
Query 1241 AGAAGATATGGACATTACCGAGAGCAAATGAGAGTTGCGGCGGCAGGGTTTGAAGCCGCG 1300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1245 AGAAGATATGGACATTACCGAGAGCAAATGAGAGTTGCGGCGGCAGCCTTTGAAGCGGCG 1304
Query 1301 GTTGGAGTAGGAGCGGCAGAGATATACACTGCGTTAGCGTCAAGGGCAATGTCAAGACAT 1360
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GTTGGACTAGGAGGGGCAGAGATATACACTGCGTTAGCGTCAAGGGCAATGTCAAGACAC 1364
Query 1361 TTTCGGTGTTTAAAAGACGGACTTGTGGGACAGATTCAAGCAACAAGTCAAGCTTTGGGA 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TTTCGGTGTTTAAAAGACGGACTTGTGGGACAGATTCAAGCAACAAGTCAAGCTTTGGGA 1424
Query 1421 GAAAGAGAAGAGGATAATCGTGCGGTTTCGATTGCTGCACGCGGAGAAACTCCACGGTTG 1480
|| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1425 GAGAGAGAAGAGGATAATCGTGCGGTTTCTATTGCAGCACGTGGAGAAACTCCACGGTTG 1484
Query 1481 AGATTGCTCGATCAAGCTTTGCGGCAACAGAAATCTTATCGTCAAATGACTCTAGTCGAC 1540
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||
Sbjct 1485 AGATTGCTCGATCAAGCTTTGCGGCAACAGAAATCGTATCGCCAAATGACTCTTGTTGAC 1544
Query 1541 GCTCATCCTTGGCGTCCACAACGCGGTTTGCCTGAACGTGCGGTCACAACGTTGAGAGCT 1600
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1545 GCTCATCCTTGGCGTCCACAACGCGGCTTGCCTGAACGCGCAGTCACAACGTTGAGAGCT 1604
Query 1601 TGGCTCTTTGAACACTTTCTTCACCCATATCCAAGCGATGTTGATAAGCATATATTGGCC 1660
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1605 TGGCTCTTTGAACACTTTCTTCACCCATATCCGAGCGATGTTGATAAGCATATATTGGCC 1664
Query 1661 CGACAAACTGGTTTATCAAGAAGTCAGGTGTCAAATTGGTTCATTAATGCAAGAGTTAGG 1720
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1665 CGACAAACTGGTTTATCAAGAAGTCAGGTATCAAATTGGTTTATTAATGCAAGAGTTAGG 1724
Query 1721 CTATGGAAACCAATGATTGAAGAAATGTACTGTGAAGAAACAAGAGGTGAACAAATGGAG 1780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1725 CTATGGAAACCAATGATTGAAGAAATGTACTGTGAAGAAACAAGAAGTGAACAAATGGAG 1784
Query 1781 ATTACAAACCCGATGATGATCGATACTAAACCGGACCCGAACCAGTTGATCCGTGTCGAA 1840
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1785 ATTACAAACCCGATGATGATCGATACTAAACCGGACCCGGACCAGTTGATCCGTGTCGAA 1844
Query 1841 CCGGAATCTTTATCTTCAATAGTGACAAACCCTACATCCAAAACCGGTCACAACTCAAAC 1900
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1845 CCGGAATCTTTATCCTCAATAGTGACAAACCCTACATCCAAATCCGGTCACAACTCAACC 1904
Query 1901 CATGGAACGACGTCGTTGGGGTCAACGTTTGACTTCTCCTTGTACGGTAACCAAGCTGTG 1960
|||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1905 CATGGAACGATGTCGTTAGGGTCAACGTTTGACTTTTCCTTGTACGGTAACCAAGCTGTG 1964
Query 1961 ACATATGCTGGTGAAGGAGGGCCACGTGGTGACGTGTCGTTGACGCTTGGGCTACAACGT 2020
||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 1965 ACATACGCTGGTGAAGGAGGGCCACGTGGTGACGTTTCCTTGACGCTTGGGTTACAACGT 2024
Query 2021 AACGATGGTAACGGTGGTGTGAGTTTAGCGTTGTCTCCGGTGACGGCTCAAGGTGGCCAA 2080
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2025 AACGATGGTAACGGTGGTGTGAGTTTAGCGTTGTCTCCAGTGACGGCTCAAGGTGGCCAA 2084
Query 2081 CTTTTCTACGGTAGAGATCACATTGAAGAAGGACCGGTTCAATATTCAGCGTCGATGTTA 2140
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2085 CTTTTCTACGGTAGAGACCACATTGAAGAAGGACCGGTTCAATATTCAGCGTCGATGTTA 2144
Query 2141 GATGATGATCAAGTTCAGAATTTGCCGTATAGGAATTTGATGGGAGCTCAATTACTTCAT 2200
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2145 GATGATGATCAAGTTCAGAATTTGCCTTATAGGAATTTGATGGGAGCTCAATTACTTCAT 2204
Query 2201 GATATTGTTTGAAATTAAAAGATTAGGACCAAA-TTATCGAAACATATTTTTCAAAACCG 2259
|||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||
Sbjct 2205 GATATTGTTTGAGATTAAAAGATTAGGACCAAAGTTATCGATACATATTTTCCAAAACCG 2264
Query 2260 ATTCGGTTATGTAACGGTTTAGTTAGATAAAAACCAAATTAGATATTTTATATAAACCGT 2319
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2265 ATTCGGTTATGTAACGGTTTAGTTAGATAAAAACCAAATTAGATATTT-ATATATACCGT 2323
Query 2320 TGTCTGATTGGATTGGGGGATTGGTGGACACAG-ATATAT-ATTAATGTATGAGTTAGTT 2377
|||||||||||||||| ||||||||||||| || | |||| |||||||||||||||||||
Sbjct 2324 TGTCTGATTGGATTGGAGGATTGGTGGACA-AGGAGATATTATTAATGTATGAGTTAGTT 2382
Query 2378 GGTTCGTCAATATCACTTGTAGGATATTTTCATTTTCTTTTTAAAAATATATTTTTGAGA 2437
|||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct 2383 GGTTCGTCAATATCACTTGTAGGATATTTTCATTTTGTTTTTTAAAATATATTATTGAGA 2442
Query 2438 CGTTTT 2443
|||||
Sbjct 2443 GGTTTT 2448
> AT2G27220.2 | Symbols: BLH5 | BEL1-like homeodomain 5 | chr2:11637164-11639537
REVERSE LENGTH=1492
Length=1492
Score = 95.3 bits (51), Expect = 2e-18
Identities = 131/168 (78%), Gaps = 12/168 (7%)
Strand=Plus/Plus
Query 1599 CTTGGCTCTTTGAACACTTTCTTCACCCATATCCAAGCGATGTT-GATAA-GCATAT-AT 1655
||||||||||||| || |||||||| |||||||| || ||| || ||||| | | || |
Sbjct 788 CTTGGCTCTTTGAGCATTTTCTTCATCCATATCCGAGGGAT-TTGGATAAGGTA-ATGCT 845
Query 1656 TGGCCCGACAAACTGG-TTTATC-AAGAAGTCAGGTGTCAAATTGGTTCATTAATGCAAG 1713
| ||| ||| ||||| ||| | ||| ||||||||||||||||||||||||||||| |
Sbjct 846 T-GCCAAACAGACTGGCCTTA-CTAAG-AGTCAGGTGTCAAATTGGTTCATTAATGCTCG 902
Query 1714 AGTTAGGCTATGGAAACCAATGATTGAAGAAATGTACT-GTGAAGAAA 1760
|||| | | ||||| ||| || | || ||| | || | | |||||||
Sbjct 903 AGTTCGAATGTGGAAGCCACTGGTGGAGGAACTTTATTCG-GAAGAAA 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121334717265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5