BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493840
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41380.1 | Symbols: | CCT motif family protein | chr5:16561... 1962 0.0
> AT5G41380.1 | Symbols: | CCT motif family protein | chr5:16561278-16563732
REVERSE LENGTH=1954
Length=1954
Score = 1962 bits (1062), Expect = 0.0
Identities = 1490/1683 (89%), Gaps = 84/1683 (5%)
Strand=Plus/Plus
Query 1 TTCACCTGTCATGTCTTGGTTCTGAAACAGAGAAACTCTCACAAACCAAAGAAGAAA--- 57
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1 TTCACCTGTCATGTCTTGGTTCTGAAACAGAGAAA--CTCACAAACCAAAGAAAAAACTT 58
Query 58 ------AAATCttttttactttttgccatttttGGTAAAACA-AAA-ACACATCACTAGA 109
|||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 59 TTGTGGAAATCTTTTTTACTTTTTGCCATTTTTGGTAAAACAGAAATTCACATCACGAGA 118
Query 110 -----ACATA-A-A-CCGGGA-At--tttta-tttttttttACTTGTTTCACTT-Caa-a 155
|| || | | | | | || | | ||||||||||| | |||||| || |
Sbjct 119 GTGTTAC-TACAGAGACAGAACATAAACTGATTTTTTTTTTAC-T-CATCACTTAAAAGA 175
Query 156 aaaaaTGGcttctgcttcagatctt-tatatctttgatggttcttcttcatcttcttctt 214
|||||||| |||| || ||||| || ||||||||||||||||| |||||||||||||| |
Sbjct 176 AAAAATGGATTCTTCTACAGAT-TTCTATATCTTTGATGGTTCGTCTTCATCTTCTTCCT 234
Query 215 cAATATTCCGAAATTCTAGTCCAGAAATGTTTTCTTCAGACACAACAACAACTACTGATT 274
|| | ||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 235 CAGTGTTCAGAAATTCGAGTCCAGATATGTTTTCTTCAGACACAACAACAACTACAGATT 294
Query 275 TGTTCTGTAACAATGAACTTTACTCTGTTGATGAATCACTCAACATTTTTGACCATTTTA 334
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 295 TGTTCTGCAACAATGAACTTTACTCTGTTGAAGAATCACTCAACATTTTTGACCATTTTA 354
Query 335 CCCCTCAAAACATTCTCTCTTCATCTCCTCCAAGTGATCTTCTTGGAACCCTAACTCTCT 394
|||||||| |||||||||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 355 CCCCTCAACACATTCTCTCTTCATCACCTCCAAGTGATCTTCTCGGAACCCTAAGTCTCT 414
Query 395 CTCAGCATATTCCCACCGGATTGTATCCAAATTTCTCAGATTTCCAAATCTCCGACGCCG 454
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 CTCAGCATATTCCCACCGGATTATATCCAAATTTCTCAGATTTCCAAATCTCCGACGCCG 474
Query 455 TCAAAACAGAGAAGTTCTTCGACGGTCATAATCAGACGGCATCAATGGCACGAAGCTACA 514
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 475 TCAAAACAGAGAAGTTCTTCGACGGTCATAATCAGGCGGCAACAATGGCACGAAGCTACA 534
Query 515 GTGCCATAGAGAATGCTGGGAGATATATGCAGAGAAGCTTTAGCAGCAATTCGGTCCAGG 574
|| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 535 GTACCATAGAGAATTCAGGGAGATATATGCAGAGAAGCTTTAGCAGCAATTCGGTCGAGG 594
Query 575 GGAAACCAAAC-CAGGTTCCGTTCAACATTCCGATGATGGATTCTTCAAATCTTAATTAC 633
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 595 GGAAAC-AAACTCAGGTTCCGTTCAACATTCCGATGATGGATTCTTCAAACCTTAGTTAC 653
Query 634 AATAACTTGAGCTCGCCGGAAAATGCTTTCTTGTCCGGTCAGATGCGACGCGTCTACAGC 693
|||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct 654 AATAACTTGAGCTCCCCGGAAAATGCTTTCTTTTCCAGTCAGATGCGACGTGTCTACAGC 713
Query 694 ACCGGAGATTTGCAGAACAATTTCCAAATGCAGCGATCGTCGGAGAACTCAACGGTGCCG 753
||||||||||||||||| ||| | |||||||| ||||||| || ||||||||| |||||
Sbjct 714 ACCGGAGATTTGCAGAATAATATGGAAATGCAGAGATCGTCTGAAAACTCAACGATGCCG 773
Query 754 TTTTCCGAGGAACAAAACTTCAAGGTTGGACGTTACAGTGCAGAAGAACGTAAAGAGAAA 813
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 774 TTTTCAGAGGAACAGAACTTCAAGGTGGGACGTTACAGTGCAGAAGAACGTAAAGAGAAA 833
Query 814 ATCTCAAAGTACAGAGCTAAACGAAACCAGAGAAACTTTACTAAAACTATCAAGTATGCA 873
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 834 ATATCAAAGTACAGAGCTAAACGAAACCAGAGAAACTTTACCAAAACTATTAAGTATGCA 893
Query 874 TGCCGGAAAACATTGGCCGACAGTAGACCTCGAATACGCGGTAGATTCGCACGCAATGAT 933
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 894 TGCCGGAAAACATTGGCGGACAGTAGACCTCGAATACGTGGTAGATTTGCACGCAATGAC 953
Query 934 GAAGTTGTAGAAATCCCCAACATTGAAGATGACGACTCCGAGCTTTGGAAATTGGATGAG 993
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 954 GAAGTTGTAGAAATCCCCAACATTGAAGATGACGACTCCGAGCTTTGGAAATTGGATGGG 1013
Query 994 CTGCATGAGAAAGAGGAAGCTTTTGTGAGCAGCTTTGTGGTGCAACAGCCTCTTTTGCAA 1053
|| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 1014 CTCCATGAGAAAGAGGAAGCTTCTGTGAGCAGCTTTGTGGTGCAACAACCTCTCTTGCAC 1073
Query 1054 TACTCAACAACTTCTTCTTCCTTTTTCTGGTGAAGGAAGACG-AAGG-GTTCTATAGTTT 1111
||| | ||||||| ||||||||||||||||||| || | ||| | ||| |||
Sbjct 1074 TAC--A-CAACTTCCTCTTCCTTTTTCTGGTGAAAGACT-CTTAAGACGAAG-ATATTTT 1128
Query 1112 TAATTTTCTTTAAAAGAAATTATAATTCTAGTTGATCATTAATTGTATTGTATATTGCAT 1171
| ||||||||| ||||||| ||| |||||||||| ||| |||||||||| ||||||||||
Sbjct 1129 TTATTTTCTTTGAAAGAAAATATCATTCTAGTTGGTCACTAATTGTATTATATATTGCAT 1188
Query 1172 CAAAACAATAACAATAAAA--GTATAAAACAGATATATTTTAGAAGAATGTAAATTTTAA 1229
||||||||||||||||||| | || | || || | || |||||||||||||||||||
Sbjct 1189 CAAAACAATAACAATAAAACAG-ATTTATCA-AT-T-TT--AGAAGAATGTAAATTTTAA 1242
Query 1230 TAAATTAC--TGTATTTATTTTTGGTTATTTGTT---CTGTATTGAAAATGACTTGTCAG 1284
|||||||| |||||| ||||||||||||| || |||||||||||| ||||| ||
Sbjct 1243 TAAATTACACTGTATTG-TTTTTGGTTATTTATTTTTCTGTATTGAAAACGACTTAACAA 1301
Query 1285 TTGTCTTTACCTGTTTTATGTGAGTGTTCAAATTTAATAATTTAATTTCAAATGCTTGAC 1344
|||||||||||| |||| |||||||| || ||||||||||||||||||||| ||||||
Sbjct 1302 TTGTCTTTACCTATTTTGTGTGAGTG---AA-TTTAATAATTTAATTTCAAATACTTGAC 1357
Query 1345 CTGGATAGAAGATTCTTTTATATGATGTCAATTTTATAGGAATTTTAATTATAATTAGTG 1404
| ||||| |||||||||| ||||||||||||||||| | ||||||| |||| |||
Sbjct 1358 CCGGATATAAGATTCTTT-ATATGATGTCAATTTTACAAGAATTTTGATTA------GTG 1410
Query 1405 GACTGAAAATTCGATTTTTGATGCACTTTATCATGAAAATATAT--TATTATTTAATTCT 1462
|||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1411 GACTAAAAATTCGATTTTTGATGCTCTTTATCATGAAAATATATAGTATTATTTAATTCT 1470
Query 1463 CCCAACCATAGAGGATCGAGATCCTCT-T-TG----GT---CATGTTA---GTGTACGAA 1510
||||||||||||||||| ||||||||| | || || ||||||| |||||||||
Sbjct 1471 CCCAACCATAGAGGATCAAGATCCTCTCTCTGATCAGTGATCATGTTATTAGTGTACGAA 1530
Query 1511 AAGCTGAGGGAA-TTATTACATTTTACCTAAAGTCAAATGACCCACTGAATATACAACTC 1569
||| | |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1531 AAGTTTAGGGAAATTATTACATTT-ACCTAAAGTCAAATGACCCACTGAATATACAAATC 1589
Query 1570 GACATCAAATTTCTTCTGGAGAAAAAAGTTTGC--ACAAACCCTAGCTGATTTATTTTTT 1627
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 1590 GACATCAAATTTCTTGTGGAGAAAAAAGTTTGCTCACAAACCCTAGTTGATTTATGTTTT 1649
Query 1628 CAT 1630
|||
Sbjct 1650 CAT 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82780698705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5