BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493844
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41340.1 | Symbols: UBC4, ATUBC4 | ubiquitin conjugating enz... 1376 0.0
AT1G63800.1 | Symbols: UBC5 | ubiquitin-conjugating enzyme 5 | ... 564 6e-160
> AT5G41340.1 | Symbols: UBC4, ATUBC4 | ubiquitin conjugating enzyme
4 | chr5:16538081-16540130 REVERSE LENGTH=953
Length=953
Score = 1376 bits (745), Expect = 0.0
Identities = 858/907 (95%), Gaps = 29/907 (3%)
Strand=Plus/Plus
Query 1 TTTTTCTCTCACACATTTTTCTTCATCTCTCTACTCGAATCCGGAAGAAG------AA-- 52
||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 63 TTTTTCTCTCACACATTTTTCTTCATCTC-C-ACTCGAATCCGGAAGAAGAACAAAAACC 120
Query 53 Gaaaaaaaaa---a-aaaaTCAGAGAAACACAAGCGAACCCAGGCAGAGaaaaaaaaaaT 108
||||||||| | ||||||||||||||| ||||||| || | ||||| |||||||||
Sbjct 121 AAAAAAAAAACCCAGAAAATCAGAGAAACATAAGCGAA-CC-GACAGAG--AAAAAAAAT 176
Query 109 GTCTTCGCCGAGCAAACGCAGAGAAATGGATATGATGAAGCTGATGATGAGCGATTATAA 168
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTCTTCGCCAAGCAAACGCAGAGAAATGGATATGATGAAGCTGATGATGAGCGATTATAA 236
Query 169 AGTGGAAACGATCAACGATGGCATGCAAGAATTCTATGTTGAATTCAATGGACCCAAAGA 228
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 AGTGGAAACGATCAACGATGGCATGCAAGAATTCTATGTTGAATTCAATGGTCCCAAAGA 296
Query 229 CAGTCTCTATCAAGGAGGTGTGTGGAAGATAAGAGTTGAGCTTCCAGATGCTTATCCTTA 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGTCTCTATCAAGGAGGTGTGTGGAAGATAAGAGTTGAGCTTCCAGATGCTTATCCTTA 356
Query 289 TAAATCTCCATCTGTTGGTTTCATTACTAAAATTTATCATCCTAATGTTGATGAACTGTC 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TAAATCTCCATCTGTTGGTTTCATTACTAAAATTTATCATCCTAATGTTGATGAACTGTC 416
Query 349 GGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGTTCGACCTTGTGAA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGTTCGACCTTGTGAA 476
Query 409 TGTGTTTGAGACATTTCTTCCTCAGCTTCTTCTTTATCCAAACCCATCAGATCCATTGAA 468
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 477 TGTGTTTGAGACATTTCTTCCTCAGCTTCTTCTGTATCCAAACCCATCAGATCCATTGAA 536
Query 469 TGGAGAAGCTGCTGCGTTAATGATGCGTGATCGTCCTGCTTATGAGCAACGAGTTAAAGA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGAGAAGCTGCTGCGTTAATGATGCGTGATCGTCCTGCTTATGAGCAACGAGTTAAAGA 596
Query 529 ATACTGTGAGAAGTATGCAAAGCCAGGGGAAGGTTCAGAAGATAAGTCTAGCGATGAAGA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATACTGTGAGAAGTATGCAAAGCCAGGGGAAGGTTCAGAAGATAAGTCTAGCGATGAAGA 656
Query 589 ACTAAGTGAAGAAGAATACGGCTCAgatgatgaagatgatgatgatgatgatgatgatgT 648
|||||||||||| ||||||||||||||| |||| | ||||||||||||||||||| | |
Sbjct 657 ACTAAGTGAAGAGGAATACGGCTCAGATAATGA-G--GATGATGATGATGATGATG-T-T 711
Query 649 TGCAATTGCAGGCAAACCAGATCCTTGAACCTGCTTTGGTAGGGGACTTGTTTTAT-GTA 707
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 712 -GCAATTGCTGGCAAACCAGATCCTTGAACCAGCTTTGGTAGGGGACTTGTTTTATTGTA 770
Query 708 TATGATCATGAATGAATTATTTATGCTTATAACTGAACTGTGAAATCTATTTCTCCCTTG 767
||||||||||||| | || | ||||||||||| ||||||||||||||||||||||||
Sbjct 771 TATGATCATGAAT---T-ATCTCTGCTTATAACTCAACTGTGAAATCTATTTCTCCCTTT 826
Query 768 GTGCTTTGTTCACCTGTTTAATTTATCGGACCGGACGTTTGTGTACATTATTAGACCGAA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GTGCTTTGTTCACCTGTTTAATTTATCGGACCGGACGTTTGTGTACATTATTAGACCGAA 886
Query 828 CCGAATTGTTAGTCTTTTCGATTTCAAATAAGTGGGTCGTACCGGTTTAAACCGGTTATT 887
||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||
Sbjct 887 CCGAATTGTTAGTCTTTTCAATTTCAAATAAGTCTCTCTTACCGGTTTATACCGGTTATT 946
Query 888 GATTCGG 894
|||||||
Sbjct 947 GATTCGG 953
> AT1G63800.1 | Symbols: UBC5 | ubiquitin-conjugating enzyme 5
| chr1:23667616-23669080 REVERSE LENGTH=907
Length=907
Score = 564 bits (305), Expect = 6e-160
Identities = 523/626 (84%), Gaps = 23/626 (4%)
Strand=Plus/Plus
Query 13 ACATTTTTCTTCATCTCTCTACTCGAATCCGGAAGAAGAAGaaaaaaaaaaaaaaTCAGA 72
||| || |||| || |||| ||| || ||| ||||| | |||||||||||||||||||
Sbjct 1 ACA-TTATCTT-ATTTCTCCACTTGATTCC--CAGAAG-ACAAAAAAAAAAAAAATCAGA 55
Query 73 GAAACACAAGCGAACCCAGGCAGAGaaaaaaaaaaTGTCTTCGCCGAGCAAACGCAGAGA 132
||| | || | | | | | ||| | ||| ||||||||||||||||| || |||||
Sbjct 56 -AAA-A-AA--G-A---A-G-A-AGAGAGAAACCATGTCTTCGCCGAGCAAGCGTAGAGA 103
Query 133 AATGGATATGATGAAGCTGATGATGAGCGATTATAAAGTGGAAACGATCAACGATGGCAT 192
||||||| ||||||| ||||||||||| || || || ||||| | |||||| ||||||||
Sbjct 104 AATGGATTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATCAATGATGGCAT 163
Query 193 GCAAGAATTCTATGTTGAATTCAATGGACCCAAAGACAGTCTCTATCAAGGAGGTGTGTG 252
|||||| |||| ||| ||||||| |||||||||||||||| | ||| | |||||||||||
Sbjct 164 GCAAGAGTTCTTTGTCGAATTCAGTGGACCCAAAGACAGTATATATGAGGGAGGTGTGTG 223
Query 253 GAAGATAAGAGTTGAGCTTCCAGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCAT 312
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 224 GAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCAT 283
Query 313 TACTAAAATTTATCATCCTAATGTTGATGAACTGTCGGGTTCTGTTTGTTTAGATGTGAT 372
||| ||||| || || |||||||| |||||| |||| |||||||||||| ||||||| ||
Sbjct 284 TACCAAAATATACCACCCTAATGTCGATGAAATGTCAGGTTCTGTTTGTCTAGATGTTAT 343
Query 373 TAACCAAACTTGGAGTCCTATGTTCGACCTTGTGAATGTGTTTGAGACATTTCTTCCTCA 432
|||||| || ||||| || ||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 344 TAACCAGACCTGGAGCCCGATGTTCGACCTGGTGAATGTGTTCGAGACATTTCTTCCGCA 403
Query 433 GCTTCTTCTTTATCCAAACCCATCAGATCCATTGAATGGAGAAGCTGCTGCGTTAATGAT 492
|||||||| ||||| || || ||||||||||||||||| ||||| ||||| || |||||
Sbjct 404 ACTTCTTCTGTATCCGAATCCGTCAGATCCATTGAATGGTGAAGCAGCTGCATTGATGAT 463
Query 493 GCGTGATCGTCCTGCTTATGAGCA-ACGAGTTAAAGAATACTGTGAGAAGTATGCAAAGC 551
||||||||||||| | ||||| || | |||||||||| || |||||||| || |||||||
Sbjct 464 GCGTGATCGTCCTACCTATGAACAGA-GAGTTAAAGAGTATTGTGAGAAATACGCAAAGC 522
Query 552 CAGGGGAAGGTT-CAGAAGATAA-GTCTAGCGATGAAGAACTAAGTGAAGAAGAATACGG 609
|| ||| || | | || || || |||||| ||||| ||| | |||||||| ||||| |
Sbjct 523 CAAGGGC-GGATACTGAGGA-AATGTCTAGTGATGATGAAATGAGTGAAGATGAATATGC 580
Query 610 CTCAgatgatgaagatgatgatgatg 635
||| |||| ||| ||||| |||||||
Sbjct 581 CTCGGATGGTGATGATGAAGATGATG 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5