BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493845
Length=2387
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41330.1 | Symbols: | BTB/POZ domain with WD40/YVTN repeat-... 3589 0.0
AT5G41320.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1033 0.0
> AT5G41330.1 | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like
protein | chr5:16535339-16537903 REVERSE LENGTH=2420
Length=2420
Score = 3589 bits (1943), Expect = 0.0
Identities = 2257/2405 (94%), Gaps = 35/2405 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaTACAAAGCGAAGAAGGTCTTCTGATTTACTCGTATGAATTTTCCGAC 60
||||||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 30 AAAAAAAAAAAAAAAAAAAGCGAAGAACGTCTTCTGATTTGCTCGTATGAATTTTCCGAC 89
Query 61 GATCCCTCATGAATCGAACGTTGTTTCCATCAACGTCGGAGGCCGAATCTTCCAAACAAC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 90 GATCCCTCATGAATCGAACGTTGTCTCCATCAACGTCGGAGGCCGAATCTTTCAAACAAC 149
Query 121 GAAACAAACCTTAACCCTAGCCGGAACCGATTCTCTTCTATCTCGACTCGTCGTCACTGA 180
||| |||||||||| ||||||||||||||||||||| ||||||| ||||| | | |||||
Sbjct 150 GAAGCAAACCTTAAGCCTAGCCGGAACCGATTCTCTCCTATCTCAACTCG-C-T-ACTGA 206
Query 181 GTCAACTCGTTTCGTCGATCGAGATCCCTATTTGTTCTCCGTTCTTCTCTATATCCTCCG 240
| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 207 GACAACTCGTTTCGTCGATCGTGATCCCGATTTGTTCTCCGTTCTTCTCTATATCCTCCG 266
Query 241 CACCGGAAACTTACCTGCGAGATCACGCGCCTTCGATGTTCGAGATCTGATCGATGAATC 300
||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 267 TACCGGAAACCTACCTGCTAGATCACGCGCCTTCGATGTTCGTGATCTCATCGATGAATC 326
Query 301 TAGATACTATGGAATCGAGTCTTTCTTAATCGATTCTCTCTCGAATTCGTCGCAGTTCGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 TAGATACTATGGAATCGAGTCTTTCTTAATCGATTCTCTCTCGAATTCGTCGCAGTTCGA 386
Query 361 GCCGTTCGATCTCCGTAGATCTAGGATTCTTCGATTAAACGGTCGAGATTCTCCGTCGAC 420
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 387 GCCGTTCGATCTCCGTAGATCTAGGATTCTTCAATTGAACGGTCGAGATTCTCCGTCGAG 446
Query 421 TATCTCACCGAC-GTTAATCGGCGGAGGACTACACGTGGCGCACGGTAGCAAAATCACTT 479
|||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 447 TATCTCACCGACTGT-AATCGGCGGAGGTCTCCACGTGGCGCACGGTAGCAAAATCACTT 505
Query 480 CGTTCGATTGGTCGTTGAGGCAAAAATCGACGGTGTTGACGAATTTCTCCGCCGTGGATT 539
|||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 506 CGTTTGATTGGTCGTTGAGGCAAAAGTCGACTGTGTTGACTAATTTCTCCGCCGTGGATT 565
Query 540 CTCTTCTAGAGATCTCTCCGGGAGTTTTAGCTGCCGGAGCCACTGATTTCCCAGGTTTGC 599
| ||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 566 CGCTTCTAGAGATATCTCCGGGAGTTTTAGCTGCCGGAGCTACCGATTTCCCTGGTTTGC 625
Query 600 AAATCATCGATCTCGAAAACGGCGGATTCGTTCGTACGACTCTGAATTGGGAAAAAGT-A 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 626 AAATCATCGATCTCGATAACGGCGGATTCGTTCGTACGACTCTGAATTGGGAAAACGTTA 685
Query 659 GCTAGGTCTAGCTCAACGGTACAAGCTATAGGTTCTTCTCCTGAGTTTCTATTCGCTAGC 718
||||||||||||||||||| ||||| ||||||||||||| ||||||| | ||| |||||
Sbjct 686 -CTAGGTCTAGCTCAACGGTTCAAGCCATAGGTTCTTCTCATGAGTTTTTGTTCACTAGC 744
Query 719 TTTGAATCTAGTAGAAGGAACTCGAATTCGATTATGGTGTATGATCTATCTAGCTTGTTA 778
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 745 TTTGAATCTAGTAGAAGGAACTCGAATTCGATTATGGTGTATGACCTTTCTAGCTTGTTA 804
Query 779 CCTGTGTCTGAGATTGATCATTGTGAGATTTATGGCGCTGATATTGATTCTGCGATTCCA 838
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 805 CCTGTGTCTGAGATTGATCATTGTGAGATCTATGGCGCTGATATTGATTCTGCGATTCCA 864
Query 839 TCGACTAAGTTGAGATGGATTCAGAGTTGTAATTTGCTGATGGTTTCTGGTTCTCATACT 898
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 865 TCGACTAAGTTGAAATGGATTCAGAGTTGTAATTTGTTGATGGTTTCTGGTTCTCATACT 924
Query 899 AGTCCTTCTGGTGTCAATGGTCACATAAGGTTTTGGGATGTTAGGTCAAGGAATATGGTT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 AGTCCTTCTGGTGTCAATGGTCACATAAGGTTTTGGGATGTTAGGTCAAGGAATATGGTT 984
Query 959 TGGGAGATTAAGGAGACACAAGATTGTTTCTCTGATGTTACTGTCTCGGATAATCTCTCG 1018
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 TGGGAGATTAAGGAGGCACAAGATTGTTTCTCTGATGTTACTGTCTCGGATAATCTCTCG 1044
Query 1019 GCGGTGTTTAAGGTCGGTGTGACTTCGGGGGAAGTTTCCTATGCCGATTTGAGGAGATTA 1078
|||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| |||
Sbjct 1045 GCGGTGTTCAAGGTCGGTGTGACTTCAGGGGAAGTTTTCTACGCCGATTTGAGGAGTTTA 1104
Query 1079 GGAACTAAGGATCCATGGGTTTGTCTTGGGgaagagaagaagagaagcttgaatgagaga 1138
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1105 GGAACTAAGGATCCATGGGTTTGTCTTGGGGAAGAGAAGAAGAGAAACTTGAATGAAAGA 1164
Query 1139 agaggagttgggtgtaagatagagagCTATGGGAATCATGTGTTTTGCAGTAGTAAAGGA 1198
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 AGAGGAGTTGGGTCTAAGATAGAGAGCTATGGGAATCATGTGTTTTGCAGTAGTAAAGGA 1224
Query 1199 AGTGGGATAGAGCTTTGGTCTGAAGTGATCACGGGTTTGCTAGGAAACGCAAGCCGAGAT 1258
||||||||||||||||||||||||||||||||||||||| | || || |||||||| |||
Sbjct 1225 AGTGGGATAGAGCTTTGGTCTGAAGTGATCACGGGTTTGGTGGGGAATGCAAGCCGGGAT 1284
Query 1259 GTATCGGAAGAGAGGGTTTTTAGGAAGAATTCGTTCGGGAAA-TTAGTGGATTCAGGAGA 1317
|||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct 1285 GTATTGGAAGAGAGGGTTTTTAGGAAGAATTCGTT-GGGAAAATTAGCGGATTCAGGAGA 1343
Query 1318 AAACAAGATAACTGGATTGGCGTTTGGAGGAAATAGAATGTTTGTGACCCGAAAGGATCA 1377
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 AAACAAGATAACAGGATTGGCGTTTGGAGGAAATAGAATGTTTGTGACCCGAAAGGATCA 1403
Query 1378 GCAGTCTGTTGAGGTTTGGCAAAGTCCTAGTCGTGGAATATCGATTTAATGAGCAAGTAT 1437
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1404 GCAGTCTGTTCAGGTTTGGCAAAGTCCTAGTCGTGGAATATCTATCTAATGAGCAAGTAT 1463
Query 1438 TAAACGTTGGTTCGAGGTGATCACGAGTTGGTTAAAATCGAATCCAACTAAA-CTAGTTA 1496
||| | |||||||||||||||||||||||| ||||| |||||||||| ||| |||||||
Sbjct 1464 TAAGCTTTGGTTCGAGGTGATCACGAGTTGCTTAAAGCCGAATCCAACAAAAACTAGTTA 1523
Query 1497 GCGACTTACATTGTCTTATAGAAAAATGAATGAATGAATCTTTATCCCATTACTTGATGA 1556
|||||||||||||| ||| |||| |||||||||| |||| |||||| ||||||||||
Sbjct 1524 GCGACTTACATTGTGTTAAAGAA----GAATGAATGA-TCTTAATCCCAATACTTGATGA 1578
Query 1557 AGCTGTCCCAACCATGAATTTCTTATTTCTGATAATCTTATAAAAAGGACTTACAT-G-- 1613
|||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1579 AGCTATTCCAACCATGAATTTCTTATCTCTGATAATCTTATAAAAAGGACTTACATCGTT 1638
Query 1614 ----AG--G---CTGTGTAGGATATTTGCATTCTAGTGACATGACCTTATACA-GTAACC 1663
|| | ||||| ||||| ||||||||||| |||||||||||||||| ||| |
Sbjct 1639 CGTCAGACGAGGCTGTGAAGGATGTTTGCATTCTAACGACATGACCTTATACAAGTA-C- 1696
Query 1664 TGCAGAGAGAAGCAAATGACCATGCTTGGGGAAATGTCAAATTGCAGAAACACCTTTCGG 1723
|||||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||||
Sbjct 1697 TGCAGAGAGAAGCAAATGACGATGCTTGGCAAAATATCAAATTGCGGAAACACCTTTCGG 1756
Query 1724 ATTCAAACGGCCTTTATCTACCAGAGCTAGTTCTGTAATCGGAGAGGCCGTTATTACAGT 1783
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1757 GTTCAAACGGCCTTTATCTACCAGGGCTAGTTCTGTAATCGGAGAGGCCGTTATTACAGT 1816
Query 1784 TGCTGACTTCAACTTCGGGAAATCTGTTACCGGAAAATCTTATGGCTCCACCTGCCATCA 1843
|||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 TGCTTACTTCAGCTTCAGGAAATCTGTTACCGGAAAATCTTATGGCTCCACCTGCCATCA 1876
Query 1844 TCAGACCTCCGAACATATTGTTGTCGTCTCTCTGCTGTGAAGAAGTTGCAGAATTCAGTT 1903
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1877 TCAGACCTCCGAACATATTGTTGTCGTCTCTCTGCTGTGAAGAAGTCGCAGAATTCAGTT 1936
Query 1904 GTGCTGGAAAATTATAACCACCTGCCATCAGATTAGGCTGAAAAGCTGCCGGAAAACCAG 1963
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1937 GTGCTGGAAAATTATAACCACCTGCCATCAGATTAGACTGAAAAGCTGCCGGAAAACCAG 1996
Query 1964 AAAAGTAACCATTGTTGTGAAACATAGAATTCTCAAATCCTTGTCCTCCTGTGACTCCTG 2023
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1997 AAAAGTAACCATTGTTGTGCAACAGAGAATTCTCAAATCCTTGTCCTCCTGTGACTCCTG 2056
Query 2024 TCTGAAATTCAGAAAGATCAGGAGTCTGAGCTACTGGTTGTCTCATTTGAAAGTTGGTGT 2083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 TCTGAAATTCAGAAAGATCAGGAGTCTGAGCTACTGGTTGTCTCATTTGAAAGTTGGTGT 2116
Query 2084 TACTTGCT-AATGGAGTAATCCCTTGGCTTGAAGAAGCAAACAACGAAGGAGGTACAGGA 2142
|||||||| || ||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 2117 TACTTGCTGAA-GGAGTAATCCCTTGGCTTGAAGAAGGAAACAACGAAGAAGGTACTGGA 2175
Query 2143 AAACTCTGCAACAGCGATGGTGAAGACATTTTTGGAAACAACGAAGAAGGTACTGGAAAA 2202
||||||||||| || |||| |||||||| ||||||||||||||||||| |||| ||||||
Sbjct 2176 AAACTCTGCAATAGTGATGATGAAGACAGTTTTGGAAACAACGAAGAATGTACCGGAAAA 2235
Query 2203 CTCTGCAACGATGATGATGAAGACAGTTGTGACGCAAAGGGTGTCACAAAATTATGATCT 2262
|||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||
Sbjct 2236 CTCTGCAACGATGATGATGA---CAGTTGTGACGCAAAAGGTGTCCCAAAGTTATGATCT 2292
Query 2263 TTCTGCATTTCAGGTCCTGCTCTCTCCACCATTGATGATCTGTTCTTGTTGGTATTAGCT 2322
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 2293 TTCTGCATTTCAGGTCCTGTTATCTCCACTATTGATGATCTGTTCTTGTTGGTATTAGCT 2352
Query 2323 TCGCTTGTTTTCTTTAGTTTCTTAGTCAGATTTGGAGCTTGAATGGCCAAAACAATACTT 2382
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2353 TCGCTTGTCTTCTTTAGTTTCTTACTCAGATTTGGAGCTTGAATGGCCAAAACAATACTT 2412
Query 2383 TTCTG 2387
|||||
Sbjct 2413 TTCTG 2417
Score = 86.1 bits (46), Expect = 1e-15
Identities = 53/56 (95%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 2176 GGAAACAACGAAGAAGGTACTGGAAAACTCTGCAAC-GATGATGATGAAGACAGTT 2230
||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2152 GGAAACAACGAAGAAGGTACTGGAAAACTCTGCAATAG-TGATGATGAAGACAGTT 2206
> AT5G41320.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:16534442-16535989
FORWARD LENGTH=1548
Length=1548
Score = 1033 bits (559), Expect = 0.0
Identities = 622/652 (95%), Gaps = 5/652 (1%)
Strand=Plus/Minus
Query 1737 TTATCTACCAGAGCTAGTTCTGTAATCGGAGAGGCCGTTATTACAGTTGCTGACTTCAAC 1796
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1548 TTATCTACCAGGGCTAGTTCTGTAATCGGAGAGGCCGTTATTACAGTTGCTTACTTCAGC 1489
Query 1797 TTCGGGAAATCTGTTACCGGAAAATCTTATGGCTCCACCTGCCATCATCAGACCTCCGAA 1856
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TTCAGGAAATCTGTTACCGGAAAATCTTATGGCTCCACCTGCCATCATCAGACCTCCGAA 1429
Query 1857 CATATTGTTGTCGTCTCTCTGCTGTGAAGAAGTTGCAGAATTCAGTTGTGCTGGAAAATT 1916
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1428 CATATTGTTGTCGTCTCTCTGCTGTGAAGAAGTCGCAGAATTCAGTTGTGCTGGAAAATT 1369
Query 1917 ATAACCACCTGCCATCAGATTAGGCTGAAAAGCTGCCGGAAAACCAGAAAAGTAACCATT 1976
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1368 ATAACCACCTGCCATCAGATTAGACTGAAAAGCTGCCGGAAAACCAGAAAAGTAACCATT 1309
Query 1977 GTTGTGAAACATAGAATTCTCAAATCCTTGTCCTCCTGTGACTCCTGTCTGAAATTCAGA 2036
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GTTGTGCAACAGAGAATTCTCAAATCCTTGTCCTCCTGTGACTCCTGTCTGAAATTCAGA 1249
Query 2037 AAGATCAGGAGTCTGAGCTACTGGTTGTCTCATTTGAAAGTTGGTGTTACTTGCT-AATG 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1248 AAGATCAGGAGTCTGAGCTACTGGTTGTCTCATTTGAAAGTTGGTGTTACTTGCTGAA-G 1190
Query 2096 GAGTAATCCCTTGGCTTGAAGAAGCAAACAACGAAGGAGGTACAGGAAAACTCTGCAACA 2155
|||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| |
Sbjct 1189 GAGTAATCCCTTGGCTTGAAGAAGGAAACAACGAAGAAGGTACTGGAAAACTCTGCAATA 1130
Query 2156 GCGATGGTGAAGACATTTTTGGAAACAACGAAGAAGGTACTGGAAAACTCTGCAACGATG 2215
| |||| |||||||| ||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1129 GTGATGATGAAGACAGTTTTGGAAACAACGAAGAATGTACCGGAAAACTCTGCAACGATG 1070
Query 2216 ATGATGAAGACAGTTGTGACGCAAAGGGTGTCACAAAATTATGATCTTTCTGCATTTCAG 2275
||||||| ||||||||||||||| |||||| |||| ||||||||||||||||||||||
Sbjct 1069 ATGATGA---CAGTTGTGACGCAAAAGGTGTCCCAAAGTTATGATCTTTCTGCATTTCAG 1013
Query 2276 GTCCTGCTCTCTCCACCATTGATGATCTGTTCTTGTTGGTATTAGCTTCGCTTGTTTTCT 2335
|||||| | ||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1012 GTCCTGTTATCTCCACTATTGATGATCTGTTCTTGTTGGTATTAGCTTCGCTTGTCTTCT 953
Query 2336 TTAGTTTCTTAGTCAGATTTGGAGCTTGAATGGCCAAAACAATACTTTTCTG 2387
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TTAGTTTCTTACTCAGATTTGGAGCTTGAATGGCCAAAACAATACTTTTCTG 901
Score = 86.1 bits (46), Expect = 1e-15
Identities = 53/56 (95%), Gaps = 2/56 (4%)
Strand=Plus/Minus
Query 2176 GGAAACAACGAAGAAGGTACTGGAAAACTCTGCAAC-GATGATGATGAAGACAGTT 2230
||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1166 GGAAACAACGAAGAAGGTACTGGAAAACTCTGCAATAG-TGATGATGAAGACAGTT 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118523486745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5