BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493849
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41300.1 | Symbols: | Receptor-like protein kinase-related ... 676 0.0
AT5G41290.1 | Symbols: | Receptor-like protein kinase-related ... 302 4e-81
AT5G41280.1 | Symbols: | Receptor-like protein kinase-related ... 248 6e-65
> AT5G41300.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr5:16515004-16516102 FORWARD LENGTH=864
Length=864
Score = 676 bits (366), Expect = 0.0
Identities = 441/476 (93%), Gaps = 9/476 (2%)
Strand=Plus/Plus
Query 335 ATAAGTTCTTCCTATCGA-CTTTAGAGACCAAGCCTTATAGCATTTGGAGCGCCGATGAT 393
||||||||||||| || | |||| |||| |||||| ||||||||||||||| ||||||
Sbjct 392 ATAAGTTCTTCCTCTCCACCTTT-GAGAAAAAGCCTAATAGCATTTGGAGCGGTGATGAT 450
Query 394 CCAATACCGAAAACACTAGGTCCATTCAGAAAGAGATTGT-TGAAGAAAATGGGAGAGGT 452
|||||||||||| |||||||||| |||| ||||||||||| | ||||||||||||||||
Sbjct 451 CCAATACCGAAATCACTAGGTCCGTTCAAAAAGAGATTGTAT-AAGAAAATGGGAGAGGC 509
Query 453 TATCGTAAGATCATCTATGTTGTCTTCAGCTCTCACGCCGTATTATTACTTGGATGTGAC 512
|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 510 TATCGTAAGATCGTCTACGTTGTCTTCCGCTCTCACGCCGTATTATTACTTGGATGTAAC 569
Query 513 TCGATTTGATGGCTCCTACGATCTCGACTCTCTTGTTCAGTGTAGTCCACATTTGAATCC 572
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 570 TAGATTTGATGGCTCCTACGATCTTGACTCTCTTGTTCAGTGTAGTCCACATTTGAATCC 629
Query 573 TGAAAACTGTACCATATGTCTGGAATATGCGTTGCAAGAAATTATCGACTGTTGTAGTGA 632
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 630 TGAAAACTGTACCATATGCCTTGAATATGCGTTGCAAGAAATTATCGACTGTTGTAGTGA 689
Query 633 CAAATTTTGGGCTATGATCTTCACTCCTAACTGTTTTGTGAATTATTAT-ATCACAACTC 691
||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 690 CAAGTTTTGGGCTATGATCTTCACTCCTAACTGTTTTGTGAATTAT-ATGATCACAACTT 748
Query 692 CACCACTGCCGCCGCTTCCATCACCGTATCACCATAGCGGTTCTTTCTCCATCAGAGGAA 751
||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 749 CACCATTGCCGCCGCTTCCATCACCGTATCACCATAGCGGTTCGTGCTCCATTAGAGGAA 808
Query 752 ATAATGAAATATTTTGGGGAATGA-C-T-CTGGCAGCTTTGGTGTTTACATTTTAG 804
||| |||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 809 ATAGTGAAATATTTTGGGGAATGATCATTCTGGCAGCTTTGGTGTTTACATTTTAG 864
Score = 440 bits (238), Expect = 9e-123
Identities = 304/336 (90%), Gaps = 4/336 (1%)
Strand=Plus/Plus
Query 1 ATGGAAACAACAAAGAAActctctgctctcttttgcttcgcttctctcttctgtctctAC 60
||||||||||| |||||||||||| || |||| |||||| |||||||||| ||||||| |
Sbjct 1 ATGGAAACAACCAAGAAACTCTCTCCTATCTTCTGCTTCTCTTCTCTCTTATGTCTCTTC 60
Query 61 TTCACCAAT-AACC-AGACCATGTCCGAATCCGACCACATGGACACTTTCTGCATCAAAT 118
|||||| || |||| || | | |||||| | ||||||||||||||||||||||| | |
Sbjct 61 TTCACC-ATGAACCAAG-CTGTCTCCGAAACAGACCACATGGACACTTTCTGCATTGATT 118
Query 119 CATCCAGAAACATCACTCACAACACAACTTACAACACAAACCTCAACACCATGCTCTCTA 178
|||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 119 CATCCAGAAACACCACTGGCAACACAACTTACAACAAAAATCTCAACACCATGCTCTCTA 178
Query 179 CTTTTCGCAACAAATCATCCATCGTTAACTATTACAATCTCACAACTGGTCTAGCTTCCG 238
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 179 CTTTTCGCAACCAATCATCCATCGTTAACAATTACAATCTCACAACTGGTCTAGCTTCAG 238
Query 239 ACACAGTCTATGGAATGTTTTTATGCACAGGAGACGTCAACATAACAACTTGCAACGCCT 298
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 239 ACACAGTCTATGGAATGTTCTTATGCACAGGAGACGTCAACATAACAACGTGCAACAACT 298
Query 299 GCGTCAAGAACGCAACAATCGAGATTGTCAAAAACT 334
|||||||||| |||||||||||||||||||||||||
Sbjct 299 GCGTCAAGAATGCAACAATCGAGATTGTCAAAAACT 334
> AT5G41290.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr5:16512326-16513500 FORWARD LENGTH=864
Length=864
Score = 302 bits (163), Expect = 4e-81
Identities = 227/257 (88%), Gaps = 8/257 (3%)
Strand=Plus/Plus
Query 82 TCCGAAT-CCGACCACATGGACACTTTCTGCATCAAATCATCCAGAAACATCACTCA-CA 139
|||| || ||||| ||||||| ||||||||||| |||||||||||||||| |||| | ||
Sbjct 70 TCCG-ATCCCGACGACATGGAAACTTTCTGCATGAAATCATCCAGAAACACCACT-AGCA 127
Query 140 ACACAACTTACAACACAAACCTCAACAC-CATGCTCTCTACTTTTCGCAACAAATCATCC 198
||||||||||||||| ||| |||||||| | | ||||| ||| || ||||| |||||| |
Sbjct 128 ACACAACTTACAACAAAAATCTCAACACTC-TTCTCTCCACTCTTAGCAACCAATCAT-C 185
Query 199 A-TCGTTAACTATTACAATCTCACAACTGGTCTAGCTTCCGACACAGTCTATGGAATGTT 257
| ||| |||||| ||||||||||| || ||||||||||| ||||| ||| ||||||||||
Sbjct 186 ATTCGCTAACTACTACAATCTCACGACCGGTCTAGCTTCAGACACCGTCCATGGAATGTT 245
Query 258 TTTATGCACAGGAGACGTCAACATAACAACTTGCAACGCCTGCGTCAAGAACGCAACAAT 317
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 246 CTTATGCACAGGAGACGTCAACAGAACAACGTGCAACGCCTGCGTCAAGAACGCAACAAT 305
Query 318 CGAGATTGTCAAAAACT 334
|||||||| ||||||||
Sbjct 306 CGAGATTGCCAAAAACT 322
> AT5G41280.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr5:16509509-16510929 FORWARD LENGTH=1084
Length=1084
Score = 248 bits (134), Expect = 6e-65
Identities = 254/308 (82%), Gaps = 23/308 (7%)
Strand=Plus/Plus
Query 42 ttctctcttctgtctctACTTCACCAAT-AACC-AGACCATGTCCGAAT-C----C-GAC 93
|||| || ||||||||| ||||||| || |||| || | || ||||||| | | |||
Sbjct 49 TTCT-TC-TCTGTCTCTTCTTCACC-ATGAACCAAG-CTATCTCCGAATCCGATTCTGAC 104
Query 94 ---CACATGGAC-ACTTTCTGC-ATCAAATCATCCAGAAACATCACTCACAACACAACTT 148
||||||| | ||||| ||| || | |||||| |||| |||||| ||| |||||||
Sbjct 105 GAGCACATGG-CGACTTTTTGCAAT-GATTCATCCGGAAATTTCACTCGCAATACAACTT 162
Query 149 ACAACACAAACCTCAACAC-CATGCTCTCTACTTTTCGCAACAAATCATCCA-TCGTTAA 206
|||||||||| |||||||| | | ||||| ||| || ||||| |||||| || ||| |||
Sbjct 163 ACAACACAAATCTCAACACTC-TTCTCTCCACTCTTAGCAACCAATCAT-CATTCGCTAA 220
Query 207 CTATTACAATCTCACAACTGGTCTAGCTTCCGACACAGTCTATGGAATGTTTTTATGCAC 266
||| ||||||||||| || ||| ||| ||| ||||||||| |||||||||| |||||||
Sbjct 221 CTACTACAATCTCACGACCGGTTTAGGTTCAGACACAGTCCATGGAATGTTCTTATGCAT 280
Query 267 AGGAGACGTCAACATAACAACTTGCAACGCCTGCGTCAAGAACGCAACAATCGAGATTGT 326
|||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 281 AGGAGATGTCAACAGAACAACATGCAACGCCTGCGTCAAGAACGCAACAATCGAGATTGC 340
Query 327 CAAAAACT 334
||||||||
Sbjct 341 CAAAAACT 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5