BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493850
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41290.1 | Symbols: | Receptor-like protein kinase-related ... 1212 0.0
AT5G41280.1 | Symbols: | Receptor-like protein kinase-related ... 1123 0.0
AT5G41300.1 | Symbols: | Receptor-like protein kinase-related ... 597 6e-170
> AT5G41290.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr5:16512326-16513500 FORWARD LENGTH=864
Length=864
Score = 1212 bits (656), Expect = 0.0
Identities = 796/862 (92%), Gaps = 16/862 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGCAACAAAGAAACTCTTTGTTCTCCTCTGCCTCTTTC-TCACCATTAACCAAGC 59
|||||| |||||||||||||||||| ||| ||||| ||| ||| ||||||| ||||||||
Sbjct 1 ATGGAAACAACAAAGAAACTCTTTGCTCTTCTCTGTCTC-TTCGTCACCATGAACCAAGC 59
Query 60 TATCTCTGAATCCGA----G-C-CCATGGCGACTTTCTGCAACG-AATCATCCGGAAACT 112
|||||| | |||||| | | ||||| ||||||||| | | |||||||| |||||
Sbjct 60 TATCTCCGTATCCGATCCCGACGACATGGAAACTTTCTGC-ATGAAATCATCCAGAAACA 118
Query 113 TCACTAGCAACACAACTTACAACAAAAATCTCAACACTCTTCTCTCTACTCTTAGCAACC 172
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 119 CCACTAGCAACACAACTTACAACAAAAATCTCAACACTCTTCTCTCCACTCTTAGCAACC 178
Query 173 AATCATCATTCGCTAACTACTATAATCTCACGACCGGTCTAGCTTCAGACACAGTCCATG 232
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 179 AATCATCATTCGCTAACTACTACAATCTCACGACCGGTCTAGCTTCAGACACCGTCCATG 238
Query 233 GAATGTTCTTATGCACAGGAGACGTCAACAGAACAACATGCAACGCCTGCGTCAAGAAGG 292
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 239 GAATGTTCTTATGCACAGGAGACGTCAACAGAACAACGTGCAACGCCTGCGTCAAGAACG 298
Query 293 CAACAATCGAGATTACCAAAAACTGCACTAACCATCGAGAAGCAATCATTTACTACTTTG 352
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| || | |
Sbjct 299 CAACAATCGAGATTGCCAAAAACTGTACTAACCATCGAGAAGCAATCATTTACAACGTAG 358
Query 353 ATTGTATGGTTCGATACTCAGATAAGTTCTTCCTCACGACCCTAGAGACCAAGCCTAGCA 412
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 ATTGTATGGTTCGATACTCAGATAAGTTCTTCCTCACGACCCTAGAGACCAATCCTAGC- 417
Query 413 T-TTGGTGGTCATCTCACGATTTAGTACCCAAATCATATGGTAAATTTGGACAGAGACTG 471
| ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 418 TATTGGTGGTCATCTAACGATTTAATACCCAAATCATTTGGTAAATTTGGACAGAGACTG 477
Query 472 TCTGAGAAAATGGGAGAAGTTATCGTTAGATCATCTTTGTTGTCTTCATCGTTTTCGCCA 531
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 478 TCTGACAAAATGGGAGAAGTTATCGTTAGATCATCTTTGTTGTCTTCATCGTTTACGCCA 537
Query 532 TATTATCTTATGGATACAACTAGATTCGATAACTTGTATGATCTTGAGTCTATTGTTCAG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TATTATCTTATGGATACAACTAGATTCGATAACTTGTATGATCTTGAGTCTATTGTTCAG 597
Query 592 TGTAGTCCTCATTTGGATCCAACAAACTGCACCACATGCCTGAAACTTGCGTTGCAAGAA 651
|||| |||| |||||||||||| ||||||||||||||| ||||||||||| |||||||||
Sbjct 598 TGTACTCCTGATTTGGATCCAAGAAACTGCACCACATGTCTGAAACTTGCATTGCAAGAA 657
Query 652 CTCACTGACTGCTGTGGTGATCAGGTTTGGGCTTTCATCTTCACTCCCAAATGTTTAGTG 711
|||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||| | |||
Sbjct 658 CTCACTGAATGCTGTGGTAATCAGGTTTGGGCTTTCATCTACACTCCCAACTGTATGGTG 717
Query 712 AGTTTTGATACCT-CAACTTCATCATTGCCACCGCTTCCACCGCCAAGTCGCAGCGGTTC 770
||||||||||| | ||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 718 AGTTTTGATACATACAA-TTCATCCTTGCCGCCGCTTCCACCGCCAAGTCGCAGCGGTTC 776
Query 771 CTTCTCC-ATTAGAGGAAATAACAAAATACTTGGGGGAATGGCTCTTGCTGTGGCCGTTT 829
||||||| || |||||||| |||||| ||||||||||||||| |||||||||| ||||||
Sbjct 777 CTTCTCCCAT-AGAGGAAACAACAAATTACTTGGGGGAATGGTTCTTGCTGTGTCCGTTT 835
Query 830 GGGTGTTTGCATTTTTGGGTTT 851
|||||||||||||||| ||||
Sbjct 836 CGGTGTTTGCATTTTTGAGTTT 857
> AT5G41280.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr5:16509509-16510929 FORWARD LENGTH=1084
Length=1084
Score = 1123 bits (608), Expect = 0.0
Identities = 788/872 (90%), Gaps = 24/872 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGCAACAAAGAAACTCTTTGTTCTCCTCTGCCTCTTTC-TCACCATTAACCAAGC 59
|||||| ||||||||||||||| |||||| ||||| ||| ||| ||||||| ||||||||
Sbjct 24 ATGGAAACAACAAAGAAACTCTCTGTTCTTCTCTGTCTC-TTCTTCACCATGAACCAAGC 82
Query 60 TATCTCTGAATCCGA----G-C---C-CATGGCGACTTTCTGCAACGAATCATCCGGAAA 110
|||||| |||||||| | | | |||||||||||| ||||| || |||||||||||
Sbjct 83 TATCTCCGAATCCGATTCTGACGAGCACATGGCGACTTTTTGCAATGATTCATCCGGAAA 142
Query 111 CTTCACTAGCAACACAACTTACAACAAAAATCTCAACACTCTTCTCTCTACTCTTAGCAA 170
|||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 143 TTTCACTCGCAATACAACTTACAACACAAATCTCAACACTCTTCTCTCCACTCTTAGCAA 202
Query 171 CCAATCATCATTCGCTAACTACTATAATCTCACGACCGGTCTAGCTTCAGACACAGTCCA 230
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 203 CCAATCATCATTCGCTAACTACTACAATCTCACGACCGGTTTAGGTTCAGACACAGTCCA 262
Query 231 TGGAATGTTCTTATGCACAGGAGACGTCAACAGAACAACATGCAACGCCTGCGTCAAGAA 290
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 263 TGGAATGTTCTTATGCATAGGAGATGTCAACAGAACAACATGCAACGCCTGCGTCAAGAA 322
Query 291 GGCAACAATCGAGATTACCAAAAACTGCACTAACCATCGAGAAGCAATCATTTACTACTT 350
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 323 CGCAACAATCGAGATTGCCAAAAACTGTACTAACCATCGAGAAGCAATCATTTACTACTT 382
Query 351 -TGATTGTATGGTTCGATACTCAGATAAGTTCTTCCTCACGACCCTAGAGACCAAGCCTA 409
| |||||||||||| ||||||||||||||||||||| | ||| ||||||| |||||||
Sbjct 383 CT-CTTGTATGGTTCGCTACTCAGATAAGTTCTTCCTCTCCACCTTAGAGACAAAGCCTA 441
Query 410 GCATTTGGTGGTCATCTCACGATTTAGTACCCAAATCATATGGTAAATTTGGACAGAGAC 469
| || ||||| ||| | ||| | ||||||||||||||| |||||||||||||||||
Sbjct 442 ATACTTATTGGTCGTCTGATGATCCAATACCCAAATCATATGATAAATTTGGACAGAGAC 501
Query 470 TGTCTGAGAAAATGGGAGAAGTTATCGTTAGATCATCTTTGTTGTCTTCATCGTTTTCGC 529
||||||| |||||||||||||||||| | |||||||||||||| ||||| |||||| |||
Sbjct 502 TGTCTGACAAAATGGGAGAAGTTATCATCAGATCATCTTTGTTATCTTCTTCGTTTACGC 561
Query 530 CATATTATCTTATGGATACAACTA-GATTCGATAACTTGTATGATCTTGAGTCTATTGTT 588
||||||||||||||||||| |||| | |||||||||||||||||||| |||||| |||||
Sbjct 562 CATATTATCTTATGGATACCACTACG-TTCGATAACTTGTATGATCTAGAGTCTGTTGTT 620
Query 589 CAGTGTAGTCCTCATTTGGATCCAACAAACTGCACCACATGCCTGAAACTTGCGTTGCAA 648
||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct 621 CAGTGTAGTCCTCATTTGGATCCAAAAAACTGCACTACATGTCTGAAACTTGCGTTGCAA 680
Query 649 GAACTCACTGACTGCTGTGGTGATCAGGTTTGGGCTTTCATCTTCACTCCCAAATGTTTA 708
||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 681 GAACTCACTCAATGCTGTGGTGATCAGCTTTGGGCTTTCATCTTCACTCCCAAATGTTTA 740
Query 709 GTGAGTTTTGATACCTCAACTTCA---TCATTGCCACCGCTTCCACCGCCAAGTCGCAGC 765
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 741 GTGAGTTTTGATACCTCAAATTCATCGTCATTGCCACCGCTTCCACCGCCAAGTCGCAGC 800
Query 766 GGTTCCTTCTCCATTAGAGGAAATAACAAAATACTTGGGGGAATGGCTCTTGCTGTGGCC 825
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 801 GGTTCCTTCTCCATTAGAGGAAATAACAAAATACTTGTGGGAATGATTCTTGCTGT---- 856
Query 826 GTTTGGGTGTTTGCATTTTTGGGTTTATGATC 857
|| || |||||||||||||||||||||||||
Sbjct 857 -TTCGG-TGTTTGCATTTTTGGGTTTATGATC 886
> AT5G41300.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr5:16515004-16516102 FORWARD LENGTH=864
Length=864
Score = 597 bits (323), Expect = 6e-170
Identities = 679/844 (80%), Gaps = 52/844 (6%)
Strand=Plus/Plus
Query 27 TCTCCTCTGCCTCTTTC-TCACCATTAACCAAGCTATCTCTGAATCCGAGCC-CATGG-C 83
|||| | || ||| ||| ||||||| ||||||||| |||| ||| | || || ||||| |
Sbjct 45 TCTCTTATGTCTC-TTCTTCACCATGAACCAAGCTGTCTCCGAAACAGA-CCACATGGAC 102
Query 84 GACTTTCTGCAACGAATCATCCGGAAACTTCACTAGCAACACAACTTACAACAAAAATCT 143
|||||||||| || |||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 103 -ACTTTCTGCATTGATTCATCCAGAAACACCACTGGCAACACAACTTACAACAAAAATCT 161
Query 144 CAACACTC-TTCTCTCTACTCTTAGCAACCAATCAT-CATTCGCTAACTACTATAATCTC 201
|||||| | | ||||||||| || |||||||||||| || ||| |||| | || ||||||
Sbjct 162 CAACAC-CATGCTCTCTACTTTTCGCAACCAATCATCCA-TCGTTAACAATTACAATCTC 219
Query 202 ACGACCGGTCTAGCTTCAGACACAGTCCATGGAATGTTCTTATGCACAGGAGACGTCAAC 261
|| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 220 ACAACTGGTCTAGCTTCAGACACAGTCTATGGAATGTTCTTATGCACAGGAGACGTCAAC 279
Query 262 AGAACAACATGCAACGCCTGCGTCAAGAAGGCAACAATCGAGATTACCAAAAACTGCACT 321
| |||||| |||||| |||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 280 ATAACAACGTGCAACAACTGCGTCAAGAATGCAACAATCGAGATTGTCAAAAACTGTACT 339
Query 322 AACCATCGAGAAGCAATCATTTACTACTTTGATTGTATGGTTCGATACTCAGATAAGTTC 381
||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 340 AACCATCGAGAAGCAATCATTTACTACATCGATTGTATGGTTCGTTACTCAGATAAGTTC 399
Query 382 TTCCTCACGACCCTAGAGACCAAGCCTA---GCATTTGGTGGTCATCTCACGATTTAGTA 438
|||||| | ||| | |||| ||||||| |||||||| | | | | ||| | ||
Sbjct 400 TTCCTCTCCACCTTTGAGAAAAAGCCTAATAGCATTTGGAG--CGG-TGATGATCCAATA 456
Query 439 CCCAAATCA-TATGGTAAATTTGGACAGAGACTGTCTGAGAAAATGGGAGAAGTTATCGT 497
|| |||||| || ||| || | ||||| ||| | ||||||||||||| | ||||||
Sbjct 457 CCGAAATCACTA-GGTCCGTTCAAAAAGAGATTGTATAAGAAAATGGGAGAGGCTATCGT 515
Query 498 TAGATCATCTTTGTTGTCTTCATCGTTTTC--GCCATATTAT--CTTATGGATACAACTA 553
||||| ||| ||||||||| || | || ||| |||||| ||| |||| |||||
Sbjct 516 AAGATCGTCTACGTTGTCTTC--CGCTCTCACGCCGTATTATTACTT--GGATGTAACTA 571
Query 554 GATTCGATAACTTGTATGATCTTGAGTCTATTGTTCAGTGTAGTCCTCATTTGGATCCA- 612
|||| ||| || || |||||||| ||| |||||||||||||||| |||||| ||||
Sbjct 572 GATTTGATGGCTCCTACGATCTTGACTCTCTTGTTCAGTGTAGTCCACATTTGAATCCTG 631
Query 613 ACAAACTGCACCACATGCCT-GAA-ACTTGCGTTGCAAGAACTCA-CTGACTGCTGTGGT 669
| |||||| |||| |||||| ||| | | |||||||||||| | | | ||||| ||| ||
Sbjct 632 A-AAACTGTACCATATGCCTTGAATA-T-GCGTTGCAAGAAATTATC-GACTGTTGTAGT 687
Query 670 GATCAGGTTT-GGGCTTTCATCTTCACTCCCAAATGTTTAGTGAGTT-T-TGATACCTCA 726
|| || |||| ||||| | ||||||||||| || ||||| |||| || | |||| | ||
Sbjct 688 GA-CAAGTTTTGGGCTATGATCTTCACTCCTAACTGTTTTGTGAATTATATGAT-CA-CA 744
Query 727 ACTTCATCATTGCCACCGCTTCCACCGCCA-AGTCGC-A--GCGGTTCCTTCTCCATTAG 782
|||||| ||||||| ||||||||| | || | || | | ||||||| | |||||||||
Sbjct 745 ACTTCACCATTGCCGCCGCTTCCATCACCGTA-TCACCATAGCGGTTCGTGCTCCATTAG 803
Query 783 AGGAAATAACAAAATACTTGGGGGAATGGCTC-TTGCTGTGGCCG-TTTGGGTGTTTGCA 840
|||||||| ||||| || |||||||| || || ||| | | | ||||| ||||| ||
Sbjct 804 AGGAAATAGTGAAATATTTTGGGGAATGA-TCATT-CTG-G-CAGCTTTGG-TGTTTACA 858
Query 841 TTTT 844
||||
Sbjct 859 TTTT 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5