BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493853
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41250.1 | Symbols: | Exostosin family protein | chr5:16501... 2364 0.0
> AT5G41250.1 | Symbols: | Exostosin family protein | chr5:16501217-16502902
REVERSE LENGTH=1686
Length=1686
Score = 2364 bits (1280), Expect = 0.0
Identities = 1553/1683 (92%), Gaps = 25/1683 (1%)
Strand=Plus/Plus
Query 1 ATGGTCTCAAAGAGAAAGTTAAGAACTTCAAAG--T-T---AGATTCTTGTATCCAtcta 54
||||| ||||||||||||| ||||||||||||| | | |||||||||||||||||||
Sbjct 1 ATGGTTTCAAAGAGAAAGTCAAGAACTTCAAAGACTATAGAAGATTCTTGTATCCATCTA 60
Query 55 tgttctgttttcttcagatcctttttctatactctttctgc---atttctcttcttcttt 111
|||||||| |||||||||| ||| | |||||||||| |||| ||||||||||||||||
Sbjct 61 TGTTCTGTCTTCTTCAGATTCTTGTACTATACTCTTCCTGCATTATTTCTCTTCTTCTTT 120
Query 112 cttctttacctttggttatctttcAACAGCGTAATTTCCCACAACAACTTCCACATATGT 171
|||||||| ||||| |||||||||| || || ||| ||| ||||||||||||| || |||
Sbjct 121 CTTCTTTATCTTTGTTTATCTTTCACCACCGGAATCTCCTACAACAACTTCCATATGTGT 180
Query 172 ATCTTCTCTCGGAAGTTCAACGATCCTTATTGTAACACGGCTGGTTCTAAACCCGGTTTT 231
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 ATCTTCTCTCGAAAGTTCAACGACCCTTATTGTAACACGGCTGGTTCTAAACCCGGTTTC 240
Query 232 CAAATAAGCTCTGAAGAAAATGAAACTTTCACCGGAGAGACCGCAGGAGATAGAGTTTCC 291
||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
Sbjct 241 CAAATAATTTCTGAAGAAAATGTAACTTTCGCCGGAGAGATCGCAGGAGATAGAGTTT-C 299
Query 292 GAAGAGA-AAC-CCAAGAATCTTGATTCAGTTCCTGATCAAGAACACAAACCCAAGAACA 349
||| || || ||||| |||| |||||||||||| ||||||||||||| | |||||||
Sbjct 300 TAAG-GATCACAACAAGATTCTTAATTCAGTTCCTGTTCAAGAACACAAAACAAAGAACA 358
Query 350 AGGTGGATCTCAGTTCACTCATTGACCTAAAAGCCGAGGAAGAATACAGAAAATACATCA 409
|||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 359 AGGTTGATCTCAATTCACTCATTGAACTAAAAGCCGAGGAAGAATACAGCAAATACATCA 418
Query 410 AACCGAAGAGTGAAGAAGAGGGATATGCGCTAAGGGCAGTCATCAAGTATCTTTACCTAC 469
|||| | ||||||||| |||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 419 AACCTACGAGTGAAGATGAGGGATATGCGTTAAGGGCAGCCATCAAGTATCTTTACCTAC 478
Query 470 AGAGATCATGGCTATCTCCGGGAGATGAAAACCTTGATAAACCGCGATCGTGTGAAGGTA 529
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 479 AAAGATCATGGCTATCTCCGGGAGATGAAAACCTCAATAAACCGCGATCGTGTGAAGGTA 538
Query 530 AAGGGGTTTATGTTTATGATTTACCGTCAAAATTCAACAGAGATTTGTTGGTTGGATGCA 589
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 539 AAGGAGTTTACGTTTATGATTTACCGTCAAAATTCAACAGCGATTTGTTGGTAGGATGCA 598
Query 590 ACGATATACTTCCAGGGGTTGACTTGTGTAGTTACTTCAAGAATGAAGGCTTTGGAGAAG 649
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 599 ACGATATACTTCCAGGGGTTAACTTGTGTAGCTACTTCAAGAATGAAGGCTTTGGAGAAG 658
Query 650 CTATTAAGAATCTTGGTAAAGGTTGGTTTGCAACACACATGTATTCTCTTGAGCCTATCT 709
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 659 CTATTAAGAATCTTGGCAAAGGTTGGTTTGCTACACACATGTATTCTCTTGAGCCCATCT 718
Query 710 TACACTCTAGGGTTTTGAAGCATCCTTGTAGGGTTTACAACGAAAGCCAAGCTAAGCTTT 769
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 719 TACACTCTAGGGTTTTGAAGCATCCTTGTAGGGTTTACAACGAGACCCAAGCTAAGCTCT 778
Query 770 TCTATGTCCCATACTATGGCGGTTATGATGTTTTGAGATGGCACTATAGGAATGTTTCTG 829
||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTTTGTCCCTTACTATGGCGGGTATGATGTTTTGAGATGGCACTATAGGAATGTTTCTG 838
Query 830 AAGATGTGAAGGACCGGTTGGGGATAGAGGTTTTAAAATGGCTTGATTCAAAGGAATCAT 889
|||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 839 AAGATGTGAAGGACCGTTTGGGGATCGAGGTTTTAAAATGGCTTAATTCAAAGGAATCAT 898
Query 890 GGAGGAGAAATGCCGGGAAAGATCATGTGTTTGTTCTCGGAAAAATTACTTGGGATTTCA 949
|||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| |
Sbjct 899 GGAGGAGAAACGCCGGGAAAGATCATGTGTTCGTTCTAGGAAAAATAACTTGGGATTTTA 958
Query 950 GGAGAGATAAGGTCCCTTGGGGCTCAAGGTTCCTTGAGCTACAAGAAATGCAAAACCCTA 1009
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGAGAGATAAGGACCCTTGGGGCTCAAGGTTCCTTGAGCTACAAGAAATGCAAAACCCTA 1018
Query 1010 CCAAGCTACTCATTGAAAGACAGCCGTGGCAGGTCAACGATATCGCCATTCCTCACCCAA 1069
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1019 CCAAGCTACTCATAGAAAGACAGCCATGGCAGGTCAACGACATCGCCATTCCTCACCCAA 1078
Query 1070 CTTATTTCCATCCGAGAACAGATGACGATATCACCAGCTGGCAGATCAAGATCATGAGTA 1129
|||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1079 CTTATTTCCATCCGCGAACAGATGATGATATCACCCGCTGGCAGATCAAGATCATGAGTA 1138
Query 1130 AACCTCGCCCGCATCTAGTAAGCTTCGCCGGG-GGTGCAAGACCCGAGAACCCTGATAAC 1188
||| ||||| | ||||||||||||||| |||| |||||||||||||| |||||| |||||
Sbjct 1139 AACTTCGCCGGAATCTAGTAAGCTTCG-CGGGAGGTGCAAGACCCGATAACCCTAATAAC 1197
Query 1189 ATCCGATCAACGCTAATCGAGCAATGCGTATCTTCATCTTCCAACCAATGTCGGTTCTTG 1248
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1198 ATCCGATCAACGCTAATCGAGCAATGC--A---T-ATCTTCCAACCAATGTCGGTTCTTA 1251
Query 1249 GATTGTACAAACGGAGGCTGCAAGAATCCAAAGAATGTTCTTGATTTGTTTCAAGATTCG 1308
|||||||||||| | |||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 1252 AATTGTACAAACGAAAGCTGCACGAATCCCAAGAATGTCCTTGATTTGTTTCAAGATTCA 1311
Query 1309 GAGTTTTGTCTGCAGCCGCCTGGAGATAGTGCAACAAGGAGATCGGTATTCGATTCACTA 1368
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1312 GAGTTTTGTCTGCAGCCGCCTGGAGATAGTGCAACAAGGAGATCAGTATTTGATTCACTA 1371
Query 1369 ATCTCCGGTTGTATTCCTGTGATCTTTACTCCGTACACGGCTTATTACCAGTACGCGTGG 1428
|||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1372 ATCTCCGGCTGCATTCCGGTGATCTTTACTCCGTACACAGCTTATTACCAGTACGCGTGG 1431
Query 1429 CATCTTCCTGAGGATCATCGGAGGTACTCAGTGTATATAAGCGAACAAGATGTGAAGGAA 1488
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1432 CATCTTCCTGAGGATCATCGGAAGTACTCAGTGTATATAAGCGAACAAGATGTGAAGGAA 1491
Query 1489 AAGAGAGTAAATGTGGTGGAGATATTGAAGGCAAAGACTCTAAGGGAGAAAAAGGATATG 1548
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1492 AAGAGAGTAAATGTGGTGGAGATATTGAAGGCAAAGACTCTAAAGGAGAAAAAGGATATG 1551
Query 1549 AGAAGTTACATCA-TTCATCAG-TTGTTGCCTGGTTTGGTCTATGGAGACTCTAATGCTA 1606
| ||||||||| | |||| ||| || |||||||| ||||| ||||||||||| |||||||
Sbjct 1552 AAAAGTTACAT-AGTTCAACAGCTT-TTGCCTGGATTGGTATATGGAGACTCCAATGCTA 1609
Query 1607 AGTTTGAGAAGTTTCGAGATGCTTTTGATATTACTTTTGATAGTTTGCTTGAGAAAATTA 1666
||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||| |
Sbjct 1610 AGTTTGAAAAGTTTCGAGATGCTTTTGATATTACTTTTGATTGTTTACTTAAGAAAATCA 1669
Query 1667 ACA 1669
|||
Sbjct 1670 ACA 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82479495435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5