BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493857
Length=1939
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41190.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nin one b... 2915 0.0
> AT5G41190.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nin one
binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site
20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria -
0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:16487475-16490101
REVERSE LENGTH=2051
Length=2051
Score = 2915 bits (1578), Expect = 0.0
Identities = 1812/1923 (94%), Gaps = 23/1923 (1%)
Strand=Plus/Plus
Query 1 TTGAAGCGGCAAATAACGAGAACCATGGATCCGAAACCAACCTCAATGTGGAGTTCTATT 60
||||||||||||||||||| |||||||||||||||||||||||| |||||||| || |||
Sbjct 66 TTGAAGCGGCAAATAACGAAAACCATGGATCCGAAACCAACCTCGATGTGGAGCTCAATT 125
Query 61 GTGAAGAAAGATCCACCTTCAAAGCCTCCGGTTAACGATGGAGCTCCGGCAGCGATTCTC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 126 GTGAAGAAAGATCCACCTTCAAAGCCTCCGGTTAACGACGGAGCTCCGGCAGCGATTCTC 185
Query 121 GGTATGGTCGGAAACTGCAAATCCACAAAGGGAATATCTATGGCTGTTGTTGACGCCAAC 180
|| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 186 GGGATGGTCGGAAACTGCAAATCCACAAAAGGAATATCTATTGCGGTTGTTGACGCCAAC 245
Query 181 GCCGTCATCGAAGGAGGCCAGAGCTTAACAAACTTCGCCGACAGATTCGTAACCGTCCCT 240
||| |||| |||||| | ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 246 GCCATCATTGAAGGACGTCAGAGCTTAACAAACTTCGCCGACAAATTCGTAACTGTCCCT 305
Query 241 GAAGTACTCTCTGAGATTCGTGACCCTGCTTCTCGCCGTCGTCTCGCTTTCATCCCTTTC 300
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GAGGTTCTCTCTGAGATTCGTGACCCTGCTTCTCGCCGTCGTCTCGCTTTCATCCCTTTC 365
Query 301 ACTATTGATACCATGGAACCTTCTCCTGAATCTCTCAGTAAAGTTATCAAATTTGCAAGA 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 366 ACTATTGATACCATGGAACCTTCTCCTGAATCTCTAAGTAAAGTTATCAAATTTGCAAGA 425
Query 361 GCTACTGGTGATTTGCAGA-CTCTGTCTGATGTTGATCTCAAATTGATTGCTTTGTCATA 419
||||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||
Sbjct 426 GCTACTGGTGATTTGCA-ATCTCTGTCTGATGTTGATCTGAAGTTGATTGCTTTGTCATA 484
Query 420 CACGCTTGAGGCTCAGGTTCATGGCACCAAAAATCTTAGAGATGTTCCTCCACCGATTCA 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 485 CACGCTTGAGGCTCAGGTTTATGGCACCAAAAATCTTAGAGATGTTCCTCCACCGATTCA 544
Query 480 AACTGTTAGAGTAAAGAGGTTACCTGAGAAGGATTTACCTGGTTGGGGCTCCAATGTGTC 539
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 545 AACTGTTAGAGTTAAGAGATTACCTGAGAAGGATTTACCTGGTTGGGGCTCCAATGTGGC 604
Query 540 TAACTTGGACGAGTGGGAGGCACTTGAAAACGAGACTGAGGAACTATCCAACGCTAACTC 599
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 605 TAACTTGGAGGAGTGGGAGGCACTTGAAAACGAGACTGAGGAAAAATCCAACGCTAACTC 664
Query 600 CAAAATCCTTCCGTTGAAAGACCTTAACATGAATATTATCGCTTCGGACAATGTTTCTGA 659
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 665 CAAAATCCTTCCATTGAAAGACCTTAACATGAATATTATTGCTTCAGACAATGTTTCTGA 724
Query 660 GGTTGGTTCTGTTGTCTCTCATACTGAGAATCATGAAGTGGATGAGCAGGAAGGTGAGAA 719
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 725 GGTTGGTTCTGTTGTCTCTCATACTGAGAATCATGAAGAGGATGTGCAGGAAGGTGGGAA 784
Query 720 GAAGCATAGGCGATACCCGCCCAAGAAAACAGAGATTAAGCTTGAGGGTAAGATGGTAGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 GAAGCATAGGCGATACCCGCCCAAGAAAACAGAGATTAAGCTTGAGGGTAAGATGGTAGT 844
Query 780 GAAGGGAATAGATGCATCCCAGGGGCAATatgatgatgatgatgatgatgCCAGTGATTG 839
| ||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 845 GGAGGGAGTTGATGCATCCCAGGGGCAATATGATGATGATGATGATGCT---AGTGATTG 901
Query 840 GAGACCCGCAGTTAGTAGAAGTACTCACAGAAGGTTTCTTAGAAGGAAGGCAACGTGGGA 899
|||||||||||| ||||||||||||||| || || ||||||||| ||||||| ||||||
Sbjct 902 GAGACCCGCAGTCAGTAGAAGTACTCACTCAAAGTATCTTAGAAGAAAGGCAAGGTGGGA 961
Query 900 ACATCACAATGCCTTGGCTGAACAAGAAATTCAGCAAGATCAAGAAGCTGACAAAGCTCG 959
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 962 ACATTACAATGCTTTGGCTGAACAAGAAATTCAGAAAGATCAAGAAGCTGACAAAGCTCG 1021
Query 960 ACACTCTAAAGACCCCAATGAAAACCATGCAAAAGATAGCGGAAAGGATGGTGAGGATCT 1019
|||| ||||||| ||||||||| ||| ||||||||||| |||||| ||||||||||| |
Sbjct 1022 ACACACTAAAGAGGCCAATGAAACCCACGCAAAAGATAGTGGAAAGAATGGTGAGGATAT 1081
Query 1020 ATCGTCCATCCTAAAAGATATGAGGTTGGAGGAAGATTCATTAAGGGCTCTCCACGAAGG 1079
||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1082 ATCTTCCATCCTTAAAGATATGAGGTTGGAGGAAGAGTCATTAAGGGCTCTCCAAGAAGA 1141
Query 1080 GACTGAAGAGACGAATGCTGAAGCTACTTTGATCAATGGTGA---TGAT---GAT-AT-- 1130
|||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||
Sbjct 1142 GACTGAAGAGACGAATGCTGAAGCAACTTTGATCAATGGTGAGGATGATATTGATCATGA 1201
Query 1131 T---GAAGTCGAAGCTGAGGGGATCGATGTTACAAATCAAGCGCTAGAGAACTTGGAGAT 1187
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1202 TATTGAAGTCGAAGCTGAGGGGATCGATGTTGCAAATCAAGCGCTAGAGAACTTGGAGAT 1261
Query 1188 TGATAGTGAGGCTGGGGATACCTTTGAGGCATCATCGATTGCAGATGATGGTAGCAGCGA 1247
|| ||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1262 TGCTAGTGAGGCTGAGGATACCTTCGAGGCATCATCGATTGGAGATGATGGTAGCAGCGA 1321
Query 1248 GCAGAGTTGGTCGTTGAGAGCCTTATCTGAGTCCAGTGTAGCTTGTATAACTGGTGATTA 1307
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1322 GCAGAGTTGGTCATTGAGAGCTTTATCTGAGTCCAGTGTAGCTTGTATAACTGGTGACTA 1381
Query 1308 TGCAATGCAGAATGTTATTCTTCAAATGGGTTTGCGTTTGCTTGCACCCGGCGGAATGCA 1367
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1382 TGCAATGCAGAATGTTATTCTTCAAATGGGTTTGCGATTGCTTGCACCCGGCGGAATGCA 1441
Query 1368 AATTCGCCAACTGCACAGGTGGATCTTGAAATGCCATGCTTGCTACACAGTAACTCCTGA 1427
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1442 AATTCGCCAACTGCATAGGTGGATCTTAAAATGCCATGCTTGCTACACAGTAACTCCTGA 1501
Query 1428 AATTGGAAGAATCTTCTGTCCCAAGTGCGGTAATGGTGGCACTCTACGCAAGGTAGCGGT 1487
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1502 AATTGGAAGAATCTTCTGTCCCAAATGTGGGAATGGTGGCACTCTACGCAAGGTAGCGGT 1561
Query 1488 TACAATAGGCGAGAATGGCGCCATCATAGCTGCATGTAAACCACGAATTATACTTCGAGG 1547
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1562 TACAATAGGCGCGAATGGCGCCATCATAGCTGCATGTAAACCACGAATTACACTTCGAGG 1621
Query 1548 GACCCAATATTCGATACCAATGCCTAAAGGAGGAAGAGAGGCAATCACCAAGAATCTGAT 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 GACCCAATATTCGATACCAATGCCTAAAGGAGGAAGAGAGGCAATCACCAAGAATCTGAT 1681
Query 1608 TCTACGGGAAGATCAACTCCCTCAAAAGTTTCTCCACCCTAGGACCAAAAAGAAAGCAAG 1667
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1682 TCTACGGGAAGATCAACTCCCTCAAAAGCTTCTCCACCCTAGGACCAAGAAGAAAGCAAG 1741
Query 1668 CAAACCGGGTGATGAGTACTTTGTATCAGACGATGTGTTCTTGAACCATCATAGTGATAG 1727
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1742 CAAACCGGGTGATGAGTACTTCGTATCAGATGATGTGTTCTTGAACCATCATAGTGATAG 1801
Query 1728 AAAGGCACCATTGCAGCCTCCTGTGAGAAAAGCTATGTCGGTTTTCAGCCAGAAAAGAAA 1787
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 AAAGGCGCCATTGCAGCCTCCTGTGAGAAAAGCTATGTCGGTTTTCAGCCAGAAAAGAAA 1861
Query 1788 CCCTAATGACAACCATTACTCTCGTTCTATGCACTGATCTTTGTTTCTCCAACACAACAA 1847
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1862 CCCTAATGACAACCATTACTCTCGTTCTATGCACTGATCTTTGTTTCTCCTACACAACAA 1921
Query 1848 TCATCTCCTTTACTTTAAGAAGATGCCAATGAttttgtctcttctttt-tactttttctt 1906
|||||||| ||||| | || |||||| ||||||||||||| |||| ||||||| |||
Sbjct 1922 ACATCTCCTGTACTTCA-GA---TGCCAACGATTTTGTCTCTT-TTTTGTACTTTTACTT 1976
Query 1907 ttt 1909
|||
Sbjct 1977 TTT 1979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96033642585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5