BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493859
Length=3012
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41150.1 | Symbols: UVH1, ATRAD1, RAD1 | Restriction endonuc... 4780 0.0
> AT5G41150.1 | Symbols: UVH1, ATRAD1, RAD1 | Restriction endonuclease,
type II-like superfamily protein | chr5:16472764-16477013
REVERSE LENGTH=3245
Length=3245
Score = 4780 bits (2588), Expect = 0.0
Identities = 2867/3003 (95%), Gaps = 14/3003 (0%)
Strand=Plus/Plus
Query 18 TCAGTTTCTCCGATTTGCG-C--CGTGTTCTTCAATGGCGCTAAAATTTCACCAACAGAT 74
||||||||||||||||||| | ||| ||||||||||||||| |||| ||||||||||||
Sbjct 61 TCAGTTTCTCCGATTTGCGTCGTCGTCTTCTTCAATGGCGCTGAAATATCACCAACAGAT 120
Query 75 CATATCAGACCTTCTCGAGGACTCTAATGGCGGATTAGTAAtcctctcctccggtctctc 134
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 121 CATATCAGACCTTCTCGAGGACTCTAATGGCGGATTATTAATCCTTTCCTCCGGTCTCTC 180
Query 135 cctcgctaaattaatcgcttctctcctcatccttcactctccctctcaaggaactctact 194
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 181 CCTCGCTAAATTAATCGCTTCTCTCCTCATCCTTCACTCTCCGTCGCAAGGAACTCTACT 240
Query 195 tctcctcctctcccccgccgctcaatctctcAAATCCAGAATCATCCATTGCATCTCCTC 254
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 241 TCTCCTCCTCTCCCCCGCCGCTCAATCTCTAAAATCCAGAATCATCCATTACATCTCCTC 300
Query 255 TCTTGATTCTCCTACTCCGACGGAGATCACCGCAGATCTTCCGGCCAATCAGCGTTACTC 314
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 301 TCTTGATTCTCCTACTCCGACGGAAATCACCGCAGATCTTCCGGCGAATCAGCGTTACTC 360
Query 315 GCTTTACACCTCCGGTTCTCCTTTCTTCATCACGCCGCGGATTCTCATCGTCGATTTATT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 361 GCTTTACACCTCCGGTTCTCCTTTCTTCATCACGCCGCGGATTCTCATCGTCGATCTGTT 420
Query 375 GACTCAACGGATTCCAGTTTCTTCACTCGCCGGAATCTTCATTCTCAATGCTCATTC-AC 433
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 421 GACTCAACGGATTCCAGTTTCTTCACTCGCCGGAATCTTCATCCTCAATGCTCATTCGA- 479
Query 434 TTTCCGAAACCTCCACTGAAGCATTCATTGTGCGAATCGTCAAATCCCTAAATGGCTCCG 493
||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |||| |
Sbjct 480 TTTCCGAAACCTCCACTGAAGCATTCATTATACGAATTGTCAAATCCCTAAATAGCTCTG 539
Query 494 CTTATATACGCGCCTTTTCCGATAGACCGCAAGCTATGGTCTCCGGTTTCGCCAAGACTG 553
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 CTTATATACGCGCTTTTTCCGATAGACCGCAAGCTATGGTTTCCGGTTTCGCCAAGACTG 599
Query 554 AACGCACCATGCGTGCTCTCTTCCTCCGTAGGCTCCATCTTTGGCCAAGGTTTCAGTTGG 613
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 600 AACGCACCATGCGTGCTCTCTTCCTCCGTAAAATCCATCTATGGCCAAGGTTTCAGTTGG 659
Query 614 ATGTGTCTCAGGAATTGGAGCGAGAACCACCTGAGGTTGTGGATATTAGGGTTTCGATGT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATGTGTCTCAGGAATTGGAGCGAGAACCACCTGAGGTTGTGGATATTAGGGTTTCGATGT 719
Query 674 CGAATTACATGGTGGGGATACAGAAAGCCATAATTGAAGTTATGGACGCTTGTCTCAAGG 733
|||||||||||||||| ||||||||||| || |||||||| ||||| |||||||||||||
Sbjct 720 CGAATTACATGGTGGGAATACAGAAAGCTATCATTGAAGTAATGGATGCTTGTCTCAAGG 779
Query 734 AGATGAAGAAGACCAACAAGGTTGATGTTGATGATTTGACTGTAGAGAGTGGTTTGTTTA 793
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGATGAAGAAGACTAATAAAGTTGATGTTGATGATTTGACTGTAGAGAGTGGTTTGTTTA 839
Query 794 AGTCCTTTGATGAGATTGTGCGGAGGCAGCTTGACCCTATTTGGCATACTTTAGGGAAGA 853
|||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |
Sbjct 840 AGTCCTTTGATGAGATTGTGAGGAGGCAGCTTGATCCTATTTGGCATACTTTGGGGAAAA 899
Query 854 GAACCAAACAGCTTGTTTCTGATTTGAAGACTTTAAGGAAGCTGCTTGACTATCTTGTTA 913
| || |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 900 GGACAAAACAGCTTGTTTCTGATTTGAAGACTTTAAGGAAGTTGCTTGATTATCTTGTTA 959
Query 914 GGTATGATGCTGTGAGTTTTCTCAAGTTCTTGGATACACTAAGGGTATCAGAGAGCTATC 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGTATGATGCTGTGAGTTTTCTCAAGTTCTTGGATACACTAAGGGTATCAGAGAGCTATC 1019
Query 974 GGTCTGTTTGGTTATTTGCAGAGTCCAGTTATAAAATATTTGATTTTGCAAAGAAACGAG 1033
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1020 GGTCTGTTTGGTTATTTGCAGAGTCCAGCTATAAAATATTTGATTTTGCAAAGAAACGAG 1079
Query 1034 TGTATCGTCTCGTGAAGGCAAGTGATGTCAAGTCAAAGGAACTTGTTAAGAATAAGAGTG 1093
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1080 TGTATCGTCTCGTGAAGGCAAGTGATGTCAAGTCAAAAGAACATGTTAAGAATAAGAGTG 1139
Query 1094 GTAAAAAGAGAAAGTCGAAGGGCGAAAATGACTCTGTAGAAGCAGTTGGTGGGGAAACGG 1153
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 GTAAAAAGAGAAATTCGAAGGGCGAAACTGACTCTGTAGAAGCAGTTGGTGGGGAAACGG 1199
Query 1154 CAACAAATGTGGCTACTGGCGTTGTTGTTGAAGAAGTTCTTGAAGAGGCGCCAAAATGGA 1213
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 1200 CAACAAATGTGGCTACTGGCGTTGTTGTAGAAGAAGTTCTGGAAGAGGCACCAAAATGGA 1259
Query 1214 AAGTCTTACGTGAGATTTTAGAAGAGACACAAGAAGAAAGAAAAAAGCAGGCTTTTTCTG 1273
||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1260 AAGTCTTACGTGAAATTTTAGAGGAGACACAAGAAGAAAGACTAAAGCAGGCTTTTTCTG 1319
Query 1274 AGGAAGACAACAGTGACAACAATGGAATAGTTCTTGTGGCTTGCAAAGATGAGCGGTCCT 1333
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1320 AGGAAGATAACAGTGACAACAATGGAATAGTTCTTGTGGCTTGCAAAGATGAACGGTCCT 1379
Query 1334 GCATGCAGCTTGAAGATTGCATCACAAACAATCCACAGAAGGTAATGCGGGAAGAATGGG 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GCATGCAGCTTGAAGATTGCATCACAAACAATCCACAGAAGGTAATGCGGGAAGAATGGG 1439
Query 1394 AAATGTACCTGCTGAGCAAAATCGAACTCCGCAGTATGCAGACACCGCAAAAGAAGAAAC 1453
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1440 AAATGTACCTGCTGAGCAAAATTGAGCTCCGCAGTATGCAGACACCGCAAAAGAAGAAAC 1499
Query 1454 AAAAAACTCCCAAGGGTTTTGGGATTCTTGATGGAGTTGTTCCGGTAACTACAATACAGA 1513
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AAAAGACTCCCAAGGGTTTTGGGATTCTTGATGGAGTTGTTCCGGTAACTACAATACAGA 1559
Query 1514 ACTCGGAAGGTAGCAGTGTTGGTAGACAAGAGCATGAGGCTCTTATGGCTGCTGCGTCTT 1573
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1560 ACTCGGAAGGTAGCAGTGTTGGCAGACAAGAGCATGAGGCTCTTATGGCTGCTGCGTCTT 1619
Query 1574 CTATTCGCAAGCTAGGAAAGACAACGGATATGGCT-CTTGGAAATAACAACCCAGAGCCT 1632
||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct 1620 CTATTCGCAAGCTAGGAAAGACAACAGATATGGCTTCT-GGAAATAACAACCCAGAGCCT 1678
Query 1633 CATGTTGAAAAGGCTTCATGTACCAAAGGAAAAGCTAAAAAGGATTCAACAAGTCTCCGG 1692
|||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1679 CATGTTGATAAGGCTTCGTGTACCAAAGGAAAAGCTAAAAAGGATCCAACAAGTCTCCGG 1738
Query 1693 AGATCCATAAGAAGTTGCAATAAGAAAAAGGAA-AACAGTAAACCTGAAATCTTAACAGG 1751
|||||| ||||||||||||||||||||| | | ||||||||||||||||||||| ||||
Sbjct 1739 AGATCCTTAAGAAGTTGCAATAAGAAAACG-ACGAACAGTAAACCTGAAATCTTACCAGG 1797
Query 1752 CCCAGAGAATGAAGAAAAAGCCAGTGAAGCTAGCACATCAGGCCCC-CGGGAAGCTAATG 1810
||||||||||||||||||||||| |||||||||||| |||| |||| | ||||| ||||
Sbjct 1798 CCCAGAGAATGAAGAAAAAGCCAATGAAGCTAGCACGTCAG-CCCCTCAAGAAGCCAATG 1856
Query 1811 TTGTTCACCCCAGTAGTGCTAAAAAGCTACCGCCTGTGCATTTTTATGCCTTAGAAAGTG 1870
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1857 CTGTTCGCCCCAGCGGTGCTAAAAAGCTACCGCCTGTGCATTTTTATGCCTTAGAAAGCG 1916
Query 1871 ATCAACCTATACTAGATATCTTGAAACCCTCTGTGATCATTGTCTACCATCCTGACATGG 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 ATCAACCTATACTAGATATCTTGAAACCCTCTGTGATCATTGTCTACCATCCTGACATGG 1976
Query 1931 GTTTTGTTAGAGAAATTGAGGTGTACAAAGCAGAGAACCCTCTGAGAAAGCTGAAAGTTT 1990
||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1977 GTTTTGTCAGAGAACTTGAGGTTTACAAAGCAGAGAACCCTCTCAGAAAGCTGAAAGTTT 2036
Query 1991 ATTTTCTTTTCTATGATGAGTCCACAGAAGTGCAGAAGTTTGAAGCAAGCATACGTCGAG 2050
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 ATTTTATTTTCTATGATGAGTCCACAGAAGTGCAGAAGTTTGAAGCAAGCATACGTCGAG 2096
Query 2051 AAAATGAAGCGTTTGAATCATTGATCAGGCAGAAGTCTTCGATGATAATTCCCGTTGATC 2110
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2097 AAAATGAAGCGTTTGAATCATTGATCAGGCAAAAGTCTTCGATGATTATTCCCGTTGATC 2156
Query 2111 AGGATGGGCTCGGCATGGGGTCGAATTCTTCTACAGAGTTTCCAGCTTCAAGTACTCAAA 2170
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2157 AGGATGGGCTCTGCATGGGGTCGAATTCTTCTACAGAGTTTCCAGCTTCAAGTACACAAA 2216
Query 2171 ACTCATTAACCCGAAAAGCAGGCGGAAGAAAGGAAATGGAGAAAGAGACACAGGTTATAG 2230
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2217 ACTCATTAACCCGAAAAGCAGGCGGAAGAAAGGAACTGGAGAAAGAGACACAGGTTATAG 2276
Query 2231 TTGACATGAGGGAGTTCATGAGCAGCCTACCAAATGTTCTTCACCAGAAAGGCATGAAGA 2290
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2277 TTGACATGAGGGAGTTCATGAGCAGTCTACCAAATGTTCTTCACCAGAAAGGCATGAAGA 2336
Query 2291 TAATACCAGTTACACTAGAGGTCGGCGACTATATCCTATCTCCTTCAATATGCGTGGAGA 2350
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2337 TAATACCAGTTACACTAGAGGTCGGCGACTATATTCTATCTCCTTCAATATGCGTAGAGA 2396
Query 2351 GAAAGAGCATTCAAGATCTTTTCCAGAGCTTCACATCAGGTCGTTTATTTCACCAAGTCG 2410
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 GAAAGAGTATTCAAGATCTTTTCCAGAGCTTCACATCAGGTCGTTTATTTCACCAAGTCG 2456
Query 2411 AAATGATGTCCCGTTATTACAGAATACCCGTTCTTCTCATCGAGTTCTCTCAAGACAAAA 2470
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 2457 AAATGATGTCCCGTTATTACAGAATACCAGTTCTTCTGATCGAGTTCTCACAAGACAAAA 2516
Query 2471 GCTTCTCCTTTCAGTCTGCGAGTGATATATCAGATGATGTGACTCCATATAACATCATAT 2530
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GCTTCTCCTTTCAGTCTTCGAGTGATATATCAGATGATGTGACTCCATATAACATCATAT 2576
Query 2531 CAAAACTATCATTGCTAGTTCTGCATTTTCCTCGGTTAAGGATATTATGGTCTCGAAGTT 2590
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2577 CAAAACTATCATTGCTAGTTCTGCATTTTCCTCGGTTAAGGTTATTGTGGTCTCGAAGTC 2636
Query 2591 TACATGCAACCGCAGAAATCTTCACTACCTTAAAATCCAACCAAGACGAGCCCGACGAGA 2650
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2637 TACATGCAACCGCAGAAATCTTTACTACCTTAAAATCCAACCAAGACGAGCCTGACGAGA 2696
Query 2651 CCCGAGCAGTGAGAGTTGGTGTGCCTTCAGAAGAAGGTATCATAGAAAATGACATCAGAG 2710
| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2697 CTCGAGCAATAAGAGTTGGTGTGCCTTCAGAAGAAGGTATCATAGAAAATGACATCAGAG 2756
Query 2711 CCGAGAACTATAACACATCAGCAGTAGAGTTTCTGAGAAGGCTTCCTGGAGTTTCAGACG 2770
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |
Sbjct 2757 CCGAGAACTATAACACATCTGCAGTTGAGTTTCTGAGAAGGCTTCCTGGAGTTTCGGATG 2816
Query 2771 CAAACTATAGAACGATAATGGAGAAATGTAAGAGTTTGGCTGAGCTCGCGTCTTTGCCTG 2830
| || || ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2817 CGAATTACAGATCGATTATGGAGAAATGTAAGAGTTTGGCTGAGCTCGCGTCTTTGCCTG 2876
Query 2831 TGGAGACATTAGCAGAACTCATGGGTGGTCACAAAGTTGCTAAAAGTCTCAGAGAGTTTC 2890
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2877 TTGAGACATTAGCAGAACTCATGGGTGGTCACAAAGTTGCTAAAAGTCTCAGAGAGTTTC 2936
Query 2891 TTGACGCTAAGTATCCGACTTTGCTATAAAAAGAGAGGTAACACTTATTTAATGTAGAAG 2950
||||||| ||||||||||||||||||| || |||||||||||||||||| ||| ||||||
Sbjct 2937 TTGACGCCAAGTATCCGACTTTGCTATGAAGAGAGAGGTAACACTTATT-AATTTAGAAG 2995
Query 2951 CTCAATCACAAAGCTGCTTAGTTATTTCTTGTTCATCTG-TGACATTTGATATAGATTAG 3009
|||| |||||||||||||||||| ||||||||||||||| | || |||| | ||||||||
Sbjct 2996 CTCATTCACAAAGCTGCTTAGTTCTTTCTTGTTCATCTGCT-ACGTTTGTTGTAGATTAG 3054
Query 3010 ATT 3012
|||
Sbjct 3055 ATT 3057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 149748324855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5