BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493864 Length=303 Score E Sequences producing significant alignments: (Bits) Value AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 460 2e-129 > AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr2:2952610-2953208 REVERSE LENGTH=453 Length=453 Score = 460 bits (249), Expect = 2e-129 Identities = 286/304 (94%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 1 TCATATGGAAGCCTTAAGCCGGATAGATTGGTAATCGTAAATGCGTTTCGTTGTTCAG-A 59 ||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| | Sbjct 151 TCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGAA 210 Query 60 AGAAGGCTTGTTTTGTTGCTTGAGAAAAGTTGAAAGGGAGTATAAAACGATACTCAAAAG 119 || ||||||||||||| |||||||||||||||||| |||||| |||||||||| ||||| Sbjct 211 AG-AGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTATGAAACGATACTGAAAAG 269 Query 120 GACGTTACAGAGTATTTGTGTTTTGAAAGTTGTTCCAAATAGCACCACCTCAGTGATAAT 179 |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| || Sbjct 270 GACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGATTAT 329 Query 180 TCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTGCACCTTGGTAAATA 239 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 330 TCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGTAAACA 389 Query 240 TTTATTGATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTT 299 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 390 TTTACTAATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTT 449 Query 300 ATAG 303 |||| Sbjct 450 ATAG 453 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14024701971 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5