BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493864

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   460    2e-129


> AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Ribosomal protein S5 domain 2-like superfamily protein 
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; 
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI 
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453

 Score =  460 bits (249),  Expect = 2e-129
 Identities = 286/304 (94%), Gaps = 2/304 (1%)
 Strand=Plus/Plus

Query  1    TCATATGGAAGCCTTAAGCCGGATAGATTGGTAATCGTAAATGCGTTTCGTTGTTCAG-A  59
            ||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |
Sbjct  151  TCATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGAA  210

Query  60   AGAAGGCTTGTTTTGTTGCTTGAGAAAAGTTGAAAGGGAGTATAAAACGATACTCAAAAG  119
            || ||||||||||||| ||||||||||||||||||  |||||| |||||||||| |||||
Sbjct  211  AG-AGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTATGAAACGATACTGAAAAG  269

Query  120  GACGTTACAGAGTATTTGTGTTTTGAAAGTTGTTCCAAATAGCACCACCTCAGTGATAAT  179
            |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||
Sbjct  270  GACGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGATTAT  329

Query  180  TCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTGCACCTTGGTAAATA  239
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct  330  TCAGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGTAAACA  389

Query  240  TTTATTGATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTT  299
            |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  390  TTTACTAATGCTGTCTGAAACACATATAATCCGGTATAAACAATGTCTGTTTGAGTATTT  449

Query  300  ATAG  303
            ||||
Sbjct  450  ATAG  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14024701971


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5