BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493865
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41110.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 2963 0.0
AT3G26890.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 736 0.0
> AT5G41110.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G26890.5);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:16451470-16454989 FORWARD LENGTH=2470
Length=2470
Score = 2963 bits (1604), Expect = 0.0
Identities = 1781/1868 (95%), Gaps = 5/1868 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCTGCCACACACTGCTTCAAATGAGCAACCCCATGAAGCTTTGTCTGCTCCAAGT 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 605 ATGGGTCTGCCACACACTGCTTCAAATGAGCAAGCCCATGAAGCTTTGTCTGCTCCAAGT 664
Query 61 TGCAGTCTTTCTCAAAGTCTGCCTGTAAATGCCACTTCTTGTGATTCAGATGGTATTAAC 120
||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 665 TGCAGCCTTTCTCAAAGTCTGCCAGTAAATGCCACTTCCTGTGATTCAGACGGTATTAAC 724
Query 121 AGAGGGAACGAAGGAAGTTTCCGCTTCTCTATTGGAGAATCTGATAGGCAAACAACAGTG 180
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 725 AGAGGGAACGAAGGAAGTTTCCGCTTCTCTATTGGAGAGTCTGATAGGAAAACAGCAGTG 784
Query 181 GAATCTTTGGAGTTTAGAGATGACTTATGGAGATTCCATGACACTCTGTCTGTTACCTCA 240
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 785 GAATCGTTGGAGTTTAGAGATGACTTATGGAGATTCCATGACACTCGGTCTGTTACCTCA 844
Query 241 TTACCTGCTCACGAACCGCCTTATGCAATGGATAAGGTAAATTTGAGTCGAACTGAAGTT 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TTACCTGCTCACGAACCGACTTATGCAATGGATAAGGTAAATTTGAGTCGAACTGAAGTT 904
Query 301 AGAAGGATAGTTGGTTTCGAATCGAATGAA-TCTAGCTCACCGAGTAATGAATACACGAG 359
||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||| ||
Sbjct 905 AGAAGGATAGTTGGTTTCGAATCAAATGAAGT-TAGCTCAGTGAGTAATGAATACACAAG 963
Query 360 TATCACTGTTAATCGCACTGGTGGATCTAATGAGGTAGATATTATCGGTGGATCGTTAGT 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TATTACTGTTAATCGCACTGGTGGATCTAATGAGGTAGATATTATCGGTGGATCGTTAGT 1023
Query 420 CAGGAAACGGGTAAGCTCTCCTCTGAATAAGCTTTTCCCTGAGAAATTTAGAGGCGACTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CAGGAAACGGGTAAGCTCTCCTCTGAATAAGCTTTTCCCTGAGAAATTTAGAGGCGACTC 1083
Query 480 ACTTGATATCAGCCGTAGCAACCAAGAGTTGGCTTCTGCTGGTATTCCTAATGGATTTCA 539
||||||||||||| |||||||||| | || ||||||||||| ||||||| ||||||||
Sbjct 1084 GCTTGATATCAGCCATAGCAACCAACCGATGACTTCTGCTGGTCTTCCTAAAGGATTTCA 1143
Query 540 CATTCCTGTTGCACAAGATCATAAAAAGGCCAATATCTCTGGGAGATTACGTCTCTTTAC 599
||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1144 CATTCCTGTTGGACAAGATCATAAAAAAGCCAATATCTCTGGGAGATTGCGTCTCTTCAC 1203
Query 600 CACTTCTACCTTCTCTGAATGGGGGAATGACTCGTCACACACGGGTAAACTTTCATCTAC 659
|||||||| || ||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 1204 CACTTCTAACTGCTCTGAATGGGGGAATGACACATCACACACGGGTAAACTTTCATCGAC 1263
Query 660 TGTTTTCACGGATGGTCCATTGCTTGACGCCAATGATCTGCAGCCCACAAAAGATGTACA 719
|||||||||||||||||||||||||||| | || ||||||||||| | ||||||||||
Sbjct 1264 TGTTTTCACGGATGGTCCATTGCTTGACTCTAACGATCTGCAGCCTAGTCAAGATGTACA 1323
Query 720 TTGCTTATATTTACCAGTACATGAAACATTTCAAGTACCTGCTAAGCCATCACCATGTCA 779
||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1324 TTGCTTATATTCACCAGTACATGAAACATTTCAAGTACCTAATAAGCCATTACCATGTCA 1383
Query 780 TAGAAACATATCTGTCTCTCCGCCACTTTCTCTGTCACCTCTTGGGCCAAGATTCCCCGA 839
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1384 TAGAAATATATCTGTCTCTCCGCCACTTTCTCTGTCACCTCTTGGGCCAAGATTTTCTGA 1443
Query 840 GAGAATGAAAGCTCTTCAAGGGGGCCTAAATGGGAATATCTTCGAAGATGGCGTTTGTTT 899
||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1444 GAGGATGAAAGCTCTTCAAGGGGGCCTAAATGGGAATATTTTCGAAGATGATGTTTGTTT 1503
Query 900 AAAGAATACTGGTGAAGAAGCAGAACTCAGGACTGGTCATAGATTGTTTGATGATACTAA 959
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1504 AAAGAATACTGGTGAAGAAGCAGAACTCAGGACTGGTCACAGATCGTTTGATGATACTAA 1563
Query 960 TGGTATCCAGAGAGCCTTTTCAATGGATAGAGCTATTGAATCAGTTCCTACATCTCCATG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 TGGTATCCAGAGAGCCTTTTCAATGGATAGAGCTATTGAATCAGTTCCTACATCTCCATG 1623
Query 1020 TAAAAGATTTAGTAGAAGCTTGAGTGGACGTCCCATTCAAAGGTCATTGGTTGGTTCGTT 1079
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1624 TAAAAGGTTTAGTAGAAGCTTGAGTGGACGTCCCATTCAAAGGTCATTGGTTGGTTCTTT 1683
Query 1080 TGAAGAATCCCTCTTTTCAGGAAGATTATCCTCTGGGCAAGCTAATCAGAAGATTGACGG 1139
|||||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 1684 TGAAGAGTCCCTCTTTTCAGGAAGATTATCTTATGGGCAAGCTAATCAGAAGATCGACGG 1743
Query 1140 TTTTCTTGCCATTCTTAGTATTGCTGGCGGAAACATCTCTCCAAAATCACAGAAGCTTCC 1199
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1744 TTTTCTTGCCATTCTTAGTATAGCTGGTGGAAACATCTCTCCAAAATCACAGAAGCTTCC 1803
Query 1200 ATTCTCAGTAACAAGTGTTGGTGATGATTGCTTCTTACTATACTATGCCTCCATAGATCT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 ATTCTCAGTAACAAGTGTTGGTGATGATTGCTTCTTACTATACTATGCCTCCATAGATCT 1863
Query 1260 CTCTAAAGGATCATTGCCAAACAAATTGTGGGGTCAGAAACTGAAAACCAACCAAAACAA 1319
|||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 1864 CTCTGGAGGATCATTGCCAAGCAAATTATGGGGTCAGAAATTGAAAACCAACCAAAACAA 1923
Query 1320 GTCTGATGCTCAGACCATCATTAATAAACGTCTTCGGATTCCTATGAAGGGTCGGATCCA 1379
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1924 GTCTGATGCTCAGACCAT--T-AATAAACGTCTTCGGATTCCTATGAAGGGTCGGATCCA 1980
Query 1380 ACTGGTTCTGAGTAACCCTGAAAAGACACCTCTTCACACTTTCCTCTGTAACTATGACTT 1439
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1981 ACTGGTTCTGAGTAACCCTGAAAAGACACCTCTACACACTTTCCTTTGTAACTATGACTT 2040
Query 1440 AACTGATATGCCACACGGTACAAAGACCTTCCTGCGCCAAAAGGTTACTCTGGCCTCCTC 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 AACTGATATGCCACACGGTACAAAGACCTTCCTGCGCCAAAAGGTTACTCTGGCCTCCTC 2100
Query 1500 TGTTCGGACCAAAGCCAAAAAATCTGCAAATAAAAGTAGTGAAGGATCTGAATCAGTGGA 1559
||||| |||||||||||||||||||||||||||| ||||||||||||| || | ||||||
Sbjct 2101 TGTTCCGACCAAAGCCAAAAAATCTGCAAATAAAGGTAGTGAAGGATCCGAGTTAGTGGA 2160
Query 1560 TGAATTGCATTCACCGAATGAGTGTAGGAACAAGAATTGTCGTGAGACGTACAGAGAAAC 1619
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2161 TGAATTGCATTCGCCGAATGAGTGTGGGAACAAGAATTGTCGTGAGACGTACAGAGAAAC 2220
Query 1620 AGGACAACGCTGTTCAAAGTCTGGAGTCTTACGCTACGCGCTTCATCTTAAATTTATTTG 1679
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2221 AGGACAACGCTGTTCAAAGTCTGGAGTCTTACGCTACGCACTTCATCTTAAATTTATTTG 2280
Query 1680 CCCTTTACGCAAGAAAGCCTCAAAATTAGGTCAGAAGAAAAGCTTGGATGCAGCAGATAA 1739
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 2281 CCCTTTACGCAAGAAAGCCTCCAAATTAGGTCAGAAGAAAAGCTTGGATGCAGGAGATGA 2340
Query 1740 TGGAGAGAGGAGATTCTATTTATATAATGACTTGAGAGTTGTGTTTCCTCAACGCCACAC 1799
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2341 TGGAGAGCGGAGATTCTATTTATATAATGAATTGAGAGTTGTGTTTCCTCAACGCCACAC 2400
Query 1800 AGATTCTGATGAAGGAAAGTTGAATGTGGAGTATCATTACCCAGAAAATCCAAGATACTT 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 AGATTCTGATGAAGGAAAGTTGAATGTGGAGTATCATTACCCAGAAAATCCAAGATACTT 2460
Query 1860 CGACGTGT 1867
||||||||
Sbjct 2461 CGACGTGT 2468
> AT3G26890.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G41110.1);
Has 393 Blast hits to 383 proteins in 134 species: Archae
- 0; Bacteria - 61; Metazoa - 171; Fungi - 74; Plants - 80;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:9907282-9911589
REVERSE LENGTH=2675
Length=2675
Score = 736 bits (398), Expect = 0.0
Identities = 1196/1563 (77%), Gaps = 127/1563 (8%)
Strand=Plus/Plus
Query 1 ATGGGTCTGCCACACACTGCTTCAAATGAGCAACCCCATGAAGCTTTGTCTGCTCCAAGT 60
|||||||||||||| |||||||||| ||| ||| |||| |||||||||||| ||||||||
Sbjct 552 ATGGGTCTGCCACAGACTGCTTCAAGTGAACAATCCCAGGAAGCTTTGTCTACTCCAAGT 611
Query 61 TGCAGTCTTTCTCAAAGTCTGCCTGTAAATGCCACTTCTTGTGATTCAGATGGTATTAAC 120
|| || ||||| |||||||||||||| |||| ||||| ||||||||||| | |||||
Sbjct 612 TGTAGCCTTTCGCAAAGTCTGCCTGTGTATGCTACTTCCCATGATTCAGATGTTCTTAAC 671
Query 121 AGAGG--G-AACGAAGGAAGTTTCCGCTTCTCTATTGGAGAATCTGATAGGCAAACAACA 177
|| || | | ||||||| ||| | |||| | |||| ||| | |||||| ||||| ||
Sbjct 672 AGTGGAAGTGAGGAAGGAA-TTTGCTCTTC-C-ATTGCAGAGTTTGATAGAAAAACATCA 728
Query 178 GTGGAATCTTTGGAGTTTAGAGATGACTT-ATGGAGATTCCATGACAC-TCTGTCTGTTA 235
|||| || ||||||| | ||||| || || ||||||| || || | ||| |||||
Sbjct 729 TTGGAGCCTCTGGAGTTCACTGATGA-TTCGTGTAGATTCCGTGGGACTTGTGT-TGTTA 786
Query 236 CCTCATTACCTGCTCACGAACCG-C--CTTATGCAATG--GATAAGGTAAATTTGAGTCG 290
|||||| | |||||| | | || | |||||| || | |||||| | || |||||
Sbjct 787 CCTCATCAAGTGCTCATGGATCGACTAGTTATGC--TGCAGGTAAGGTTAGTTCGAGTCT 844
Query 291 AACTGAAGTTAGAAGGATAGTTGGTTTCGAATCGA-ATGAATCTAGCTCAC-CGAGTAAT 348
|||| || |||||||||||||||||| | || | ||| | ||||||| || ||
Sbjct 845 TACTGGAGCTAGAAGGATAGTTGGTTTTGCGTC-AGGCGAAACAAGCTCACTGGA-CAAC 902
Query 349 GAATACACGAGTATCACTGTTAATCGCACTGGT-GGAT---CTAAT-GAG--GTA-GA-T 399
|| | |||||| || ||||| ||| | || | || || | ||| | | || |
Sbjct 903 AAACAAACGAGTGTCGCTGTTGATCACTCT-CTATCATCCACTGTTGGAGTTGCAGGAGT 961
Query 400 A-TTATCGGTGGATCGTTAGTCAGGAAACGGGTAAGCTCT-CCTC-TGAATAAGCTTTTC 456
| |||||||||| | |||||||||||||| || | |||| || | | |||| ||||||
Sbjct 962 AGATATCGGTGGAGCATTAGTCAGGAAACGAGT-A-CTCTCCCCCTTAAATACTCTTTTC 1019
Query 457 CCTGAGAAATTTAGAGGCGA-CTCACTTGATATCAGC---CGTAGCAACCAA-GAGTTGG 511
|||| ||||| ||||| || || | |||||||||| ||| | ||||| | ||
Sbjct 1020 CCTGTCAAATTCAGAGGTGACCT-GCATGATATCAGCTGTGGTAACCACCAACAAATT-A 1077
Query 512 CTTCTGCTGGT-ATTCCTAATGGATT-T-CACATTCCTGTTGCACAAGATCATAAAAAGG 568
||| | ||||| | | |||||||||| | || | | |||| ||||||||||| | |||||
Sbjct 1078 CTTATTCTGGTCAGT-CTAATGGATTCTGCA-ACT-CTGTCGCACAAGATCACATAAAGG 1134
Query 569 CCAATATCTCTGGGAGATTACGTCTCTTTACCACT--T-CTA-C-C---TT-CTCTGAAT 619
| |||| | || | || |||| ||||| || ||| | | | | | || || || |
Sbjct 1135 CTAATACCCCTAGTAGGTTACATCTCTCCACTACTCCTACAACCACAAGTTGCTGGGAGT 1194
Query 620 GGGGGAATGACTCGTCACACACG-GGTAAACTTTCATCTACT-GTTTTCACGGATGGTCC 677
|| ||||| || ||| ||| | |||| ||| || |||| | || ||||| ||||||||
Sbjct 1195 GGAAGAATG--TC-TCAAACA-GTGGTAGACTCTCGTCTA-TGGTCTTCACTGATGGTCC 1249
Query 678 ATTGCTTGACGCCAAT-GATCT--G-CAGCCC-ACAAAAGATGT-A-CATTGCTTATATT 730
|||||||||| | | ||||| | || ||| |||| || || | |||||||||||
Sbjct 1250 ATTGCTTGAC-TCTGTAGATCTCCGCCAACCCGTCAAAGGAGGTGAGGTTTGCTTATATT 1308
Query 731 TACCAGTACATGAAACATTTCAAG--TACCTGCTAAGCCATCACCATGTCAT-AGAAACA 787
||| || ||||||| || || ||| |||||| | ||| ||| || || || |
Sbjct 1309 CCCCACTATATGAAAC--GTCTAGCACACCCAATAAGCCCTTACCTTGTGATAAGGAA-A 1365
Query 788 TATCTGTCTCTCCGCCACTTTCTCTGTCACCTCTTGGGCC-AAGATTCCCCGAGAGAATG 846
|||||||||||||||| |||| ||||||||| ||||| || ||| || | |||||| |
Sbjct 1366 TATCTGTCTCTCCGCCGCTTTGTCTGTCACCACTTGGTCCGAAG-TTTTCTGAGAGAGTA 1424
Query 847 AAAGCTCTTCAAG--GGGGCCTAAA-TGGGAATAT-CTTCGAAGATGGCGTTTGTTTAAA 902
|||||| | ||| | ||| ||| |||||| || | | ||||| |||||
Sbjct 1425 AAAGCT-GT-AAGAAGTTGCC-AAACTGGGAAAATAC-TGGAAGA---------TTTAAG 1471
Query 903 GAATACT-GGTGAAGAAGCAGAACTCAGGA-CTGGTCATAGATTGTTTGATGATACTA-A 959
||||| | |||||||||||||| | | || || || |||||||||||||||| | | |
Sbjct 1472 GAATA-TCAGTGAAGAAGCAGAA-TTAAGAGTTGATCGTAGATTGTTTGATGATGC-ATA 1528
Query 960 TGGTATCCA-GAGAGCCTTTTCAATGGATAG-AGCTATTGAATCAGTTCCTACATCTCCA 1017
|| || | |||||| ||||||||||| || || || |||||||| |||| ||||||||
Sbjct 1529 TGCCAT-TAGGAGAGCGTTTTCAATGGAGAGAAG-TACTGAATCAGCTCCTGCATCTCCA 1586
Query 1018 TGTAAAAGATTTAGTAGAAGCTTGAGTGGACGTCCCATTCAAAGGTCATTGGTTGGTTCG 1077
|||||||| || | |||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 1587 TGTAAAAGGTTCATTAGAAGCTTGAGTGGACGGCCTATTCAGAGGTCATTGGTTGGTTCT 1646
Query 1078 TTTGAAGAATCCCTCTTTTCAGGAAGATTATCCT-CTGGG-CAAGCTAATCAGAAGATTG 1135
||||| || || ||||| ||||| |||| || | | ||| ||| | |||||||||||||
Sbjct 1647 TTTGAGGAGTCACTCTTGACAGGACGATTGTCATGC-GGGCCAA-CAAATCAGAAGATTG 1704
Query 1136 ACGGTTTTCTTGCCATTCTTAGTATTGCTGGCGGAAACATCTCTCCAAAATCACAGAAGC 1195
|||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1705 ACGGCTTTCTTGCCGTTCTTAGTATTGCTGGGGGAAACATCTCTCCAAAATCACAGAAGC 1764
Query 1196 TTCCATTCTCAGTAACAAGTGTTGGTGATGATTGCTTCTTACTATACTATGCCTCCATAG 1255
|||||||||||||||| |||| ||||||||||||| |||| ||||||| ||||||||||
Sbjct 1765 TTCCATTCTCAGTAACTAGTGCTGGTGATGATTGCCTCTTGTTATACTACGCCTCCATAG 1824
Query 1256 ATCTCTCTAAAGGATC-A--TTGCCAAACAAATTGTGGGGTCAGAAACTGAAAACCAAC- 1311
||||| || |||||| | ||| || |||||| ||||| || ||| ||||||| ||
Sbjct 1825 ATCTCGCTGGAGGATCTAAATTG--AA-CAAATTCTGGGGCCAAAAAGTGAAAAC-AAGT 1880
Query 1312 CAAAACAAGTCTGATGCTCAGACCATCATTAATAAACGTCTTCGGATTCCTATGAAGGGT 1371
|||| || |||||||| |||| || || | | || ||||| || |||||||||
Sbjct 1881 CAAATGAACTCTGATGCCCAGAGT-TCG--AAGAGCCAACTGCGGATCCCCATGAAGGGT 1937
Query 1372 CGGATCCAACTGGTTCTGAGTAACCCTGA-AAAGACACCTCTTCACACTTTCCTCTGTAA 1430
||||| ||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||
Sbjct 1938 CGGATTCAACTGGTTCTTAGTAACCCTGAGAAA-ACACCTCTTCACACCTTCCTCTGTAA 1996
Query 1431 CTATGACTTAACTGATATGCCA-CACGGTACAAAGACCTTCCTGCGCCAAAAGGTTACTC 1489
||||||||| |||||||||||| | || |||||||| ||| |||||||||||||||| |
Sbjct 1997 CTATGACTTGACTGATATGCCAGCT-GGAACAAAGACGTTCTTGCGCCAAAAGGTTACAC 2055
Query 1490 TGG 1492
|||
Sbjct 2056 TGG 2058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92419203345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5