BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493869
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41080.1 | Symbols: | PLC-like phosphodiesterases superfami... 1971 0.0
> AT5G41080.1 | Symbols: | PLC-like phosphodiesterases superfamily
protein | chr5:16441744-16443985 FORWARD LENGTH=1389
Length=1389
Score = 1971 bits (1067), Expect = 0.0
Identities = 1220/1293 (94%), Gaps = 13/1293 (1%)
Strand=Plus/Plus
Query 48 TCTACTCTTGA-AAATGGCTCTTAGAACTGTGCTCGTCTCCGACGTCCCTAGCCTCCCGG 106
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 TCTACTCTTGAGAAATGGCTCTTAGAACTGTGCTCGTCTCCGACGTCCCTAGCCTCCCGG 160
Query 107 AGTCTGTTTACGGATTATCCGAAGGTTTAGAGTTGAGCAAACCGACATCGTTTAGGTTAC 166
| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 161 ATTCTGTCTACGGTTTATCCGAAGGTTTAGAGTTGAGCAAACCGACGTCGTTTAGGTTAC 220
Query 167 CGGGTTTTTCGGTTATTGGACACAGAGGAATCGGTATGAATGTGTTGCAATCGTCTGATC 226
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 221 CGGGGTTTTCGGTGATTGGACATAGAGGAATCGGTATGAATGTGTTGCAATCGTCTGATC 280
Query 227 GGAGAACGAGAGGTGTTAAGGAAAACTCAATTCTTTCGTTCAATTCCGCCGCCAAGTATC 286
||||| ||||||||||||| |||||||| |||||||| |||||||||||||| |||||||
Sbjct 281 GGAGAGCGAGAGGTGTTAAAGAAAACTCGATTCTTTCATTCAATTCCGCCGCTAAGTATC 340
Query 287 CGATTGATTTCATTGAGTTCGATGTTCAGGTGACAAAAGATGATTACCCTGTTATTTTCC 346
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 341 CGATTGATTTCATTGAGTTCGATGTTCAGGTGACAAAAGATGATTGCCCTGTCATTTTCC 400
Query 347 ATGATGATTTTATCTACTCTGAAGAAAATGGTATTGTTAATGAGAGTAGAGTGACGGATC 406
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 ATGATGATTTCATCTACTCTGAAGAAAATGGTATTGTTAATGAGAGTAGAGTGACGGATC 460
Query 407 TTAGTCTGTCTGAGTTTCTCCTTTACGGACCTCAGAAGGAAACTGAGAAAATAGGGAAGA 466
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 461 TGAGTCTGTCTGAGTTTCTCCTTTATGGACCTCAGAAGGAAACTGAGAAAATAGGGAAGA 520
Query 467 CCCTGATGAGGAAATCTAAAGAAGGAAAGGTTTTGAAATGGGACGTTGATTTGGATGATT 526
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 521 CACTGATGAGGAAATCTAAAGAAGGGAAGGTTTTGAAATGGGACGTTGATTTGGATGATT 580
Query 527 CTCTTTGCACGTTGCAAGAAGCTTTTGAACAAGTTGAACAAACTCTGGGGTTCAATATCG 586
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 581 CTCTTTGTACGTTGCAAGAAGCTTTTGAACAAGTTGAACAAACTCTTGGGTTCAATATCG 640
Query 587 AGTTGAAATTCGATGATCAGACGGTTTATGAACGAGAGTTTCTTGTTCATGTCCTGAGAT 646
|||||||||| ||||||||||| || |||||||||||||||||||| ||| |||||||||
Sbjct 641 AGTTGAAATTTGATGATCAGACCGTCTATGAACGAGAGTTTCTTGTCCATATCCTGAGAT 700
Query 647 CAGTTTTGCAGGTGGTCTCTAATTATGCTAAAGACAGACCAGTGATCTTCTCAAGTTTCC 706
|||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 701 CAGTACTACAGGTGGTCTCTAATTATGCTAAAGACAGACCAGTAATCTTCTCAAGTTTCC 760
Query 707 AACCAGATGCAGCAAAACTTGTTAGGGAACTGCAGAGCACTTACCCTGTTTTCTTTCTGA 766
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 AACCAGATGCAGCTAAGCTTGTTAGGGAACTGCAGAGCACTTACCCTGTTTTCTTTCTGA 820
Query 767 CTGATGCGGGGAATGAGGTTCACAATGACGAGAGAAGAAACTCACTCGAAGAAGCCATTC 826
|||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 821 CTGATGCGGGAAACGAGATTCACAATGACGAGAGAAGAAACTCGCTCGAAGAAGCCATTC 880
Query 827 AAGTTTGCTTGGAAGGGGGTCTTCAAGGCATTGTCTCAGAGGTAAAAGGAGTGTTCAGAA 886
|||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 881 AAGTTTGCTTGGAAGGAGGTCTTCAAGGTATTGTTTCAGAGGTAAAAGGAGTGTTCAGGA 940
Query 887 ACCCAGCAGCCATTAGCAAGATCAAAGAATCTAACCTCTCTCTTCTCACATACGGCAAAC 946
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 941 ACCCAGCAGCCATTAGCAAGATCAAAGAATCTAACCTCTCTCTCCTCACATACGGCAAAC 1000
Query 947 TAAACAATGTGGGAGAGGCAGTGTACATGCAATATGTGATGGGGATCGATGGAGTTATTG 1006
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1001 TCAACAATGTCGGAGAGGCAGTGTACATGCAATATGTGATGGGGATCGATGGAGTGATTG 1060
Query 1007 TAGATTTTGTTGAGGAAATTATACAGTCCACGACACTG-ATGATGATAAGaccaccacca 1065
|||||||||||||||| |||||| |||||||||||| | |||||||||||||||||||||
Sbjct 1061 TAGATTTTGTTGAGGAGATTATAGAGTCCACGACAC-GCATGATGATAAGACCACCACCA 1119
Query 1066 ccatcatcatcaccattaccatcaccTTCAAAGGATGATGATGTTGCCATTACAAGACCT 1125
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1120 ---TCATCATCACCATTACCATCACCTTCCAAGGATGATGATGTTGCCATTACAAGACCT 1176
Query 1126 GAGTTTTCACAGAAGGAGATATCTTTTCTTCTCAAGCTTCTCTCTCAGTTGATACAACAT 1185
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1177 GAGTTTTCACAGAAGGAGATTTCTTTTCTTCTCAAGCTTCTCTCTCAGTTGATACAACAT 1236
Query 1186 TGATGATGACCATCTCTGttttctttttcttttatcccaagtttctttttaatttttaat 1245
|||| || | ||| | ||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 1237 TGAT-AT--C--TCTGTTTTTTCGTTTTCTTTTATCCCAAGTTTCTTTTTAGGGTTTGAT 1291
Query 1246 tttcttgttgatttttttATTATTCTGGGTGTATTACCCAATAGTTGGAACTGTAAATAA 1305
|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1292 TTTCTTATTGATTTAATTATTATTCTGGGTGTATTACCCAATAGTTGGAATTGTAAATAA 1351
Query 1306 TTATATAATGTTCTTTCTTTTTACAAGGATTAA 1338
||||| ||| || ||||||||||||||||||||
Sbjct 1352 TTATA-AAT-TTATTTCTTTTTACAAGGATTAA 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5