BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493870
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:16... 2122 0.0
AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:99... 645 0.0
> AT5G41070.1 | Symbols: DRB5 | dsRNA-binding protein 5 | chr5:16438307-16440046
FORWARD LENGTH=1460
Length=1460
Score = 2122 bits (1149), Expect = 0.0
Identities = 1315/1393 (94%), Gaps = 20/1393 (1%)
Strand=Plus/Plus
Query 1 ATTTAGAACCTTTAGTACCTTACCATGTGAGTGAAGAGTTCAAAAACCTCTGCAAAAACT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTAGAACCTTTAGTACCTTACCATGTGAGTGAAGAGTTCAAAAACCTCTGCAAAAACT 60
Query 61 CTCttttttttATCTCTCTCCTCTTTAAACTTACTTTCAAACATTAAACAGCCAAAACCT 120
|||||||| | |||||||| |||||||||||||||||||||| |||| |||||||| ||
Sbjct 61 TTCTTTTTTATCTCTCTCTCTTCTTTAAACTTACTTTCAAACACTAAATAGCCAAAA-CT 119
Query 121 T-AGATACCAAATTTTTACAGGGaaaaaaaaTGTATAAGAATCAGCTTCAAGAGCTTGCA 179
| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 TAAGATACCAAATTTCAACAGGG-GAAAAAATGTATAAGAATCAGCTTCAAGAGCTTGCA 178
Query 180 CAGAGAAGCTGTTTCAACTTACCATCATATACTTGCATAAGAGAAGGACCAGATCATGCT 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAGAGAAGTTGTTTCAACTTACCATCATATACTTGCATAAGAGAAGGACCAGATCATGCT 238
Query 240 CCAAGATTCAAAGCTTCTGTTAACTTCAATGGTGAGATATTTGAAAGTCCCACTTACTGT 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 239 CCAAGATTCAAAGCTTCTGTTAACTTCAATGGTGAGATATTTGAGAGTCCCACTTACTGT 298
Query 300 TCTACTCTCAGACAAGCTGAGCATGCAGCTGCTGAAGTTTCTCTTAATGTCCTTTCCTCT 359
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 299 TCTACTCTCAGACAAGCTGAGCATGCAGCTGCTGAAGTTTCCCTTAATGTCCTTTCGTCT 358
Query 360 AGAGTCCCTTCAAAATC-CTTGACTGCTAAGATTCTTGATGAGACAGGGATTTACAAGAA 418
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAGTCCCTTCAAAGTCTCTA-ACTGCTAAGATTCTTGATGAGACAGGGATTTACAAGAA 417
Query 419 CCTGCTTCAAGAGACAGCACACAGAGCTGGTCTTGATCTACCAATGTACACAAGTGTGAG 478
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCTGCTTCAAGAGACAGCACATAGAGCTGGTCTTGATCTACCAATGTACACAAGTGTGAG 477
Query 479 ATCAGGATCTTGTCACTTCCCAGGTTTCTCTTGTACTGTGGAACTTGCTGGGATGA-GTT 537
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 478 ATCAGGATCTTGTCACTTCCCAGGTTTCTCTTGTACTGTTGAACTTGCTGGGATGACGTT 537
Query 538 TTACAGGAGAATCAGCAAAGACAAAGAAACAAGCTGAGAAAAACGCAGCCATTGCAGCTT 597
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 T-ACAGGAGAATCAGCAAAGACAAAGAAACAAGCTGAGAAAAACGCAGCCATTGCAGCTT 596
Query 598 GGTCCTCTTTGAAGAGAATGTCAAGCTTGGATTCTCAAGATGAAGAGAAGGAACAAGAAG 657
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 597 GGTCCTCTTTGAAGAAAATGTCAAGCTTGGATTCACAAGATGAAGAGAAGGAACAAGAAG 656
Query 658 CAGTAGCAAGAGTACTCTcaagatttaaacccaaagaagtaagaagaagagagacaacaa 717
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 657 CAGTAGCAAGAGTACTCTCAAGATTTAAACCCAAAGAAGTAAGAAGACGAGAGACAACAA 716
Query 718 accaatggagaagaagaacaagtcaacaagattcaaacaagGATTTGTTGATTGAGAGAT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ACCAATGGAGAAGAAGAACAAGTCAACAAGATTCAAACAAGGATTTGTTGATTGAGAGAT 776
Query 778 TGAGATGGATCAACCTATTGACCAATCAAGCTTCTtcatcatcatcatcatcatcatcaA 837
||||||||||||| || |||||||||||||||||||||||||||||| ||||| | ||
Sbjct 777 TGAGATGGATCAATCTTTTGACCAATCAAGCTTCTTCATCATCATCAACATCA--A-CA- 832
Query 838 CACAGAATCAACACaaaaaaaCAAGTTTCATCTCTCTAATTCCCCCACCACCACCACCTA 897
| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 833 C-C-GAATCAACACAAAAACTCCAGTTTCATCTCTCTAATTCCCCCACCACCACCACCTA 890
Query 898 AATCCTCCAAAATTTTGCCATTTATCCAGCCATACAAAGACAGATCATCACAAGAAGCTA 957
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 891 AATCCTCCAAAATTTTGCCATTTATCCAGCAATACAAAGACAGATCATCACAAGAAGCTA 950
Query 958 AGACAGAGACACCGACAGAGATGATCATCAGCAAGGCCAAACTCAATGAAACATCAAACA 1017
||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||||| ||
Sbjct 951 AGACAGAGACAGCGACAGAGATGATCAACAGCAAAGCCAAAGTCAATGAAACATCAACCA 1010
Query 1018 GATTGAGTAAACAAATGCCCTTTTCCGACAATGG-CAGATACAACTTCGTCGGAGGATGT 1076
|||||||||| ||||||||||||||||||| || |||||||||||| |||||||| |||
Sbjct 1011 GATTGAGTAAGCAAATGCCCTTTTCCGACA-TGAACAGATACAACTTTGTCGGAGGGTGT 1069
Query 1077 AGCGTAAACCCTTTTAGTCTGGCTCCAGCAGTTCAAATCAGATCAGTGATTCCAGTTTTC 1136
||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1070 AGCGTAAACCCTTATAGTCTGGCTCCAGCGGTTCAAATGAGATCAGTGATTCCAGTTTTC 1129
Query 1137 GCAGCTCCACCATCGAAACCAAACCCTAACCTTAACCCATCATCATTATCATCGTCAGTC 1196
|||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1130 GCAGCTCCACCACCGAAACCAAACCCCAACCTTAACCCATCATCATTATCATCATCAGTC 1189
Query 1197 AATGAATCCACCTCATCCA-TAAACTCATGTTCTGTTCTGAATACGCCGGTATTGGGAGG 1255
||||||| ||||||||||| ||| || || ||||||||||||||||||| |||||||||
Sbjct 1190 AATGAATTCACCTCATCCAATAAT-TCCTGCTCTGTTCTGAATACGCCGGGATTGGGAGG 1248
Query 1256 CCAAAAGAAGAAGAGTCAAAGCTGG-GAAATAATCAAACTTGGTTTAGAATCGAGAATTT 1314
|||| ||||||||| || || || | ||||| ||||||||||||| ||||||||||||||
Sbjct 1249 CCAAGAGAAGAAGAATCTAA-CTCGCGAAATGATCAAACTTGGTTCAGAATCGAGAATTT 1307
Query 1315 CGAATCAAACCCATGATTAGTTAGCTAAATTTGGTAAAAGGGTTAATCTCAAATTAAATC 1374
| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 1308 TGGATCAAACCCATGAT-AGTTAGCTAAATTTGGTTAATGGGTTAATCTCAAATTAAATC 1366
Query 1375 Cttgttaagtgtt 1387
||||| |||||||
Sbjct 1367 CTTGTCAAGTGTT 1379
> AT3G26932.1 | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:9930270-9932074
REVERSE LENGTH=1503
Length=1503
Score = 645 bits (349), Expect = 0.0
Identities = 526/607 (87%), Gaps = 29/607 (5%)
Strand=Plus/Plus
Query 150 ATGTATAAGAATCAGCTT-CAAGAGCTTGCACAGAGAAGCTGTTTCAACT-TACCATCAT 207
||||||||||||||| || ||||||||||||||||| || |||||| | | | |||||||
Sbjct 234 ATGTATAAGAATCAG-TTGCAAGAGCTTGCACAGAGGAGTTGTTTC-AGTCTCCCATCAT 291
Query 208 ATACTTGCATAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTTCTGTTAACTTCA 267
|||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 292 ATACATGCACAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTCA 351
Query 268 ATGGTGAGATATTTGAAAGTCCC-ACTTACTGTTCTACTCTCAGACAAGCTGAGCATGCA 326
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 352 ATGGTGAGATATTTGAAAG-CCCAACTTACTGTTCTACTCTCAGACAAGCTGAGCATTCA 410
Query 327 GCTGCTGAAGTTTCTCTTAATGTC-CTTTCCTCTAGA-GTCCCTTCAAAATCCT-TGACT 383
|||||||||||| |||||| || | || || || | | || |||||||| | || | |||
Sbjct 411 GCTGCTGAAGTTGCTCTTAGTG-CTCTCTCTTCCAAAGGT-CCTTCAAAGT-CTCTAACT 467
Query 384 GCTAAGA-TTCTTGATGAGACAGGGATTTACAAGAACCTGCTTCAAGAGACAGCACACAG 442
||| ||| |||| |||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 468 GCT-AGAGTTCTAGATGAGACTGGGATCTACAAGAATCTGCTTCAAGAGACAGCACACAG 526
Query 443 AGCTGGTCTTGATCTACCAATGTACACAAGTGTGAGATCAGGATCTTGTCACTTCCCAGG 502
|||||||||||||||||| | ||||||||||||||||||||| || ||||| |||||
Sbjct 527 AGCTGGTCTTGATCTACCGGTTTACACAAGTGTGAGATCAGGACCTGGTCACATCCCAAC 586
Query 503 TTTCTCTTGTACTGTGGAACTTGCTGGGATGAGTTTTACA-GGAGAATCAGCAAAGACAA 561
||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||| |
Sbjct 587 ATTCTCTTGTACTGTGGAGCTTGCTGGAATGAGTTTTA-ATGGAGAATCAGCAAAGACTA 645
Query 562 AGAAACAAGCTGAGAAAAACGCAGCCATTGCAGCTTGGTCCTCTTTGAAGAGAA-TGTCA 620
|||||||||||||||| || ||||||||||||||||||| ||| |||| || || || ||
Sbjct 646 AGAAACAAGCTGAGAAGAATGCAGCCATTGCAGCTTGGTTCTCCTTGA-GAAAAATGCCA 704
Query 621 AGCTTGGATTC-TCAAGA--TGAAGAGAAGGAACAAGA-AGCAGTAGCAAGAGTACTCTc 676
|| ||||| | | ||| |||||||||||||||||| | ||| |||||||| |||||
Sbjct 705 AGATTGGACCCATTGAGAGGTGAAGAGAAGGAACAAGAGAT-AGTTGCAAGAGTCCTCTC 763
Query 677 aagatttaaacccaaagaagt-aagaagaagagagacaacaaaccaatggagaagaagaa 735
|||||||| |||||||||||| || ||||||||| || ||||||| | ||||||||||
Sbjct 764 AAGATTTAGACCCAAAGAAGTGAA-AAGAAGAGA-AC--CAAACCAGTCAAGAAGAAGAA 819
Query 736 caagtca 742
|| ||||
Sbjct 820 CA-GTCA 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5