BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493874
Length=1570
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41040.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2194 0.0
> AT5G41040.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:16431374-16433305 FORWARD LENGTH=1667
Length=1667
Score = 2194 bits (1188), Expect = 0.0
Identities = 1372/1456 (94%), Gaps = 31/1456 (2%)
Strand=Plus/Plus
Query 145 GGTTGCTGAGAACAACAACAACAAAGAAGGT-ACACTCTCTGCATCAATGG--------- 194
||||||||||||||| || ||| ||| | || |||||||||||||||||||
Sbjct 77 GGTTGCTGAGAACAATAAAAAC-AAGGACGTAACACTCTCTGCATCAATGGACAACAACA 135
Query 195 ACAACAACATGAAAGGAACTAACTTTCATCTTGAGGTTCATCAAAAGGAACCAGCTTTGG 254
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 136 ACAACAACATCAAAGGAACTAACATTCATCTTGAGGTTCATCAAAAGGAACCAGCTTTGG 195
Query 255 TCAAACCTGAATCCGAGACACGAAAGGGTCTTTACTTCTTGTCGAATCTTGACCAGAACA 314
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 196 TCAAACCTGAATCCGAGACACGAAAGGGCCTTTACTTCTTGTCGAATCTTGACCAGAACA 255
Query 315 TCGCCGTGATTGTTCGTACAATCTACTGTTTCAAATCTGAGGAGAGAGGGAACGAGGAAG 374
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 256 TCGCCGTGATTGTTCGTACAATCTACTGTTTCAAATCCGAGGAGAGAGGGAACGAGGAAG 315
Query 375 CAGTCCAAGTGATCAAGAAAGCTCTGAGTCAAGTTCTTGTTCATTACTACCCTCTTGCTG 434
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 316 CAGTCCAAGTGATCAAGAAAGCTCTGAGTCAAGTTCTTGTTCATTACTATCCTCTCGCTG 375
Query 435 GACGCCTCACCATCAGTCCTGAAGGTAAACTCACAGTTGACTGTACTGAAGAAGGAGTTG 494
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 376 GACGCCTCACCATCAGTCCTGAAGGTAAACTCACAGTTGACTGTACCGAAGAAGGAGTTG 435
Query 495 TATTTGTGGAAGCGGAAGCAAACTGTAAAATGGATGAGATTGGTGACATTACCAAACCCG 554
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TGTTTGTGGAAGCAGAAGCAAACTGTAAAATGGATGAGATTGGTGACATTACCAAACCCG 495
Query 555 ATCCCGAAACTCTAGGGAAACTTGTGTACGATGTTGTAGACGCCAAGAATATTCTTGAGA 614
|||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 496 ATCCTGAAACTCTAGGGAAGCTTGTGTACGATGTCGTAGACGCCAAGAACATTCTTGAGA 555
Query 615 TTCCTCCTGTCACTGCTCAGGTGACTAAATTCAAATGTGGAGGGTTTGTTCTCGGACTCT 674
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TCCCTCCTGTTACCGCTCAGGTGACTAAATTCAAATGTGGAGGGTTTGTTCTCGGACTCT 615
Query 675 GTATGAATCACTGTATGTTTGATGGAATTGGAGCTATGGAGTTTGTTAACTCATGGGGTC 734
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GTATGAATCACTGTATGTTCGATGGAATTGGAGCTATGGAGTTTGTTAACTCATGGGGTC 675
Query 735 AAGTCGCTAGAGGCTTACCATTAACAACTCCTCCATTCTCAGACCGAACCATTCTCAGTG 794
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||
Sbjct 676 AAGTCGCTAGAGGCTTACCATTAACAACTCCCCCATTCTCAGACAGAACCATTCTCAATG 735
Query 795 CTCGAAACCCTCCAAAGATCGAGAATCTTCACCAAGAATTCGAAGAGATCGAAGATAAAT 854
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 736 CTCGAAACCCTCCAAAGATCGAGAATCTCCACCAAGAATTTGAAGAGATCGAAGATAAAT 795
Query 855 CCAACATCAACTCTCTCTATACCAAAGAGCCAACTCTCTACAGATCCTTCTGCTTTGACC 914
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 796 CCAACATCAACTCTCTTTACACCAAAGAGCCAACTCTCTACAGATCCTTCTGCTTTGATC 855
Query 915 CAGAGAAAATCAAGAAACTTAAGCACCAAGCAACAGAGAACAGTGAGTCTCTCCTCGGTA 974
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 856 CAGAGAAAATCAAGAAACTTAAGCTCCAAGCAACAGAGAACAGTGAGTCTCTCCTCGGTA 915
Query 975 ACTCCTGCACAAGTTTTGAGGCTTTATCTGCTTTTGTGTGGAGAGCAAGAACCAAGTCGT 1034
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 916 ACTCATGCACAAGTTTTGAGGCTTTATCTGCTTTTGTCTGGAGAGCAAGAACCAAGTCGT 975
Query 1035 TGAAGATGTTGAGTGATCAGAAAACGAAGCTTCTCTTCGCCGTTGATGGGAGAGCCAAGT 1094
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 976 TGAAGATGTTGAGTGATCAGAAAACGAAGCTTCTCTTCGCCGTTGATGGTAGAGCCAAGT 1035
Query 1095 TTGAGCCTCAATTGCCAAAAGGGTACTTCGGAAATGGAATTGTTCTTACAAACTCCATCT 1154
| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1036 TCGAGCCTCAACTGCCAAAAGGGTACTTCGGAAATGGAATTGTTCTCACAAACTCCATCT 1095
Query 1155 GTGAAACTGGAGAGCTTATCGAAAAACCGTTGAGTTTCGCGGTGGGATTAGTCAGAGAAG 1214
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GTGAAGCTGGGGAGCTTATCGAAAAACCGTTGAGTTTCGCGGTGGGATTAGTCAGAGAAG 1155
Query 1215 CAATTAAGATGGTCACTGATGGATACATGAGATCTGCGATTGATTACTTCGAAGTCACGA 1274
| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1156 CCATTAAGATGGTAACTGATGGGTACATGAGATCTGCTATTGATTACTTCGAAGTCACGA 1215
Query 1275 GAGCAAGACCTTCTCTTTCCTCGACTCTTCTGATCACTACATGGTCAAGATTGGGTTTCC 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GAGCAAGACCTTCTCTTTCCTCGACTCTTCTGATCACTACATGGTCAAGATTGGGTTTCC 1275
Query 1335 ACACGACAGATTTCGGTTGGGGAGAACCGATTTTGTCCGGTCCAGTAGCTTTGCCTGAGA 1394
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1276 ACACGACAGATTTCGGTTGGGGAGAACCGATTTTATCCGGTCCAGTAGCTTTGCCTGAGA 1335
Query 1395 AAGAAGTGACTCTGTTTCTGTCTCATGGAGAACAGAGAAGAAGCATAAATGTGCTTCTTG 1454
||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1336 AAGAAGTAACTCTGTTTTTGTCTCATGGAGAACAGAGGAGAAGCATCAATGTGCTTCTTG 1395
Query 1455 GACTTCCTGTTTCAGCCATGGATGTGTTTCAAGAACAGTTTTTACAGATATAA-A--AAT 1511
||||||| | | ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1396 GACTTCCCGCTACAGCCATGGATGTGTTTCAAGAACAGTTTTTACAGATATAATATGAAC 1455
Query 1512 A---------T-CA-------GGCTATTATTGTCAAAACCTATTCGTTTTACTCTGTTTC 1554
| | || ||| ||||||||||||||||||||||||||||||||||
Sbjct 1456 AACGACAAAATACAAATATCTGGCAATTATTGTCAAAACCTATTCGTTTTACTCTGTTTT 1515
Query 1555 TCTTGCTTCCTTTTTT 1570
||||||||||||||||
Sbjct 1516 TCTTGCTTCCTTTTTT 1531
Score = 102 bits (55), Expect = 1e-20
Identities = 63/66 (95%), Gaps = 3/66 (5%)
Strand=Plus/Plus
Query 1 CAAAAGTTCCATTCTTTTTCACCACAAAGCCATTGTGCTGTTTTCTCCATTTGGATCAAA 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 18 CAAAAGTTCCATTCTTTTT---CACAAAGCCATTGTGCTGTTTTCTCCATTTGGATCAAA 74
Query 61 ATGGTT 66
||||||
Sbjct 75 ATGGTT 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77509641480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5