BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493876
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41030.1 | Symbols: | TCP family transcription factor | ch... 726 0.0
> AT5G41030.1 | Symbols: | TCP family transcription factor |
chr5:16428706-16429437 FORWARD LENGTH=732
Length=732
Score = 726 bits (393), Expect = 0.0
Identities = 642/751 (85%), Gaps = 62/751 (8%)
Strand=Plus/Plus
Query 1 ATGGTCATGGATCCCAAGAAGAATCC-AACTCTACCAAGTTTCTTAAACCCATCACCACA 59
||||||||||| ||||||||||| || || |||||||||||||||||||||||||| |||
Sbjct 1 ATGGTCATGGAGCCCAAGAAGAA-CCAAAATCTACCAAGTTTCTTAAACCCATCACGACA 59
Query 60 AAATCTGGACAACGACAAGAAGAGGAAACAAACAGAGGTTAAAGGTTTCGACATTGTGGT 119
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GAATCAGGACAACGACAAGAAGAGGAAACAAACAGAGGTTAAAGGTTTCGACATTGTGGT 119
Query 120 ---C------A-G--G--G-A-GA-AA-GAAGAGGAAGAAC-AG--ATTCAGCTTCTTGA 158
| | | | | | || || ||||||||||| | || |||||| ||||| |
Sbjct 120 CGGCGAAAAGAGGAAGAAGAAGGAGAATGAAGAGGAAGACCAAGAAATTCAGATTCTTTA 179
Query 159 TGAG-A--AGAAGAAGAAACCAAACAGAGATCGACACCGTAAAGTCGAAGGAAGAGGTCG 215
|||| | |||||||||||||||||| |||||| |||| |||||| ||||||||||||||
Sbjct 180 TGAGAAGGAGAAGAAGAAACCAAACAAAGATCGTCACCTTAAAGTTGAAGGAAGAGGTCG 239
Query 216 AAGAGTTAGGTTACCTCCACTTTGTGCAGCGAGGATTTATCAATTGACTAAAGAATTAGG 275
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 240 TAGAGTTAGGTTACCTCCACTCTGTGCAGCAAGGATTTATCAATTGACTAAAGAATTAGG 299
Query 276 TCACAAATCAGATGGTGAGACTCTTGAATGGTTACTTCAACAAGCTGAGCCATCTATAAT 335
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |
Sbjct 300 TCACAAATCAGATGGTGAGACTCTTGAATGGTTGCTTCAACATGCTGAGCCATCGATACT 359
Query 336 CTCTGCTACTGGAAATGGAATCAAACCCATTGGAACCACCACCACTGATTCTGTTTCTCA 395
||||||||||| |||||| |||||||||| || | | || || ||||||||
Sbjct 360 CTCTGCTACTGTAAATGGTATCAAACCCACTG-AGTC--------TG-TT--GTTTCTCA 407
Query 396 ACCTTCTCTCACGGCGGATTTGATGGTTAGGCATAACTTTGAAGGAGCTTCAAGGACTCA 455
|||| |||||||||| ||||||||| || | |||| | |||||| |||||||||||||||
Sbjct 408 ACCTCCTCTCACGGCTGATTTGATGATTTGTCATAGCGTTGAAGAAGCTTCAAGGACTCA 467
Query 456 AATGGCGGCAAATG--------A-AACA-GAG-CA--A-A--CCACTGGAGGGTTTGATT 499
||||| |||||||| | || | || || | | ||| |||||||||||||
Sbjct 468 AATGGAGGCAAATGGGTTGTGGAGAA-ATGAAACAGGACAGACCATTGGAGGGTTTGATC 526
Query 500 TGAATTACGGAATTGGGTTTGGTTTCAATGGTGTTTCAGAGATTGGTTTTGGAAATAATC 559
||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||
Sbjct 527 TGAATTACGGAATTGGGTTTGATTTCAATGGTGTTCCAGAGATTGGTTTTGGAGATAATC 586
Query 560 AAACGCCTGGACTTGAATTAGGGTTGTCTCAAGTTGCGGTTTTGAATCCACAGGTTTATC 619
|||||||||||||||||||| || |||||||||||| |||||||||||||||||||| ||
Sbjct 587 AAACGCCTGGACTTGAATTAAGGCTGTCTCAAGTTGGGGTTTTGAATCCACAGGTTTTTC 646
Query 620 AACAAATGGGTCAAGAACAGT-CTAGGGTTCTTCATCATCAT-CATTCTTATGAAGATCA 677
||||||||||| ||||||||| | |||||||||||||||||| || | ||||||||||
Sbjct 647 AACAAATGGGTAAAGAACAGTTC-AGGGTTCTTCATCATCATTCA--C--ATGAAGATCA 701
Query 678 GCAACAGAGTGCAGAGAAAAATGGTTCTTAA 708
||| |||||||||||| |||||||||| |||
Sbjct 702 GCAGCAGAGTGCAGAGGAAAATGGTTCATAA 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5