BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493877
Length=2100
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41000.1 | Symbols: YSL4 | YELLOW STRIPE like 4 | chr5:16420... 3306 0.0
AT3G27020.1 | Symbols: YSL6 | YELLOW STRIPE like 6 | chr3:99613... 1834 0.0
> AT5G41000.1 | Symbols: YSL4 | YELLOW STRIPE like 4 | chr5:16420780-16423830
FORWARD LENGTH=2276
Length=2276
Score = 3306 bits (1790), Expect = 0.0
Identities = 1999/2102 (95%), Gaps = 5/2102 (0%)
Strand=Plus/Plus
Query 1 GAAATCTGCCGGGAATTCTCAATTTTTTGGAAAAGAAGTAGCTTTTTGTTGTTATGGAGA 60
||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 79 GAAATCTGCAGGAAATTCTCAATTTTTT-TAAAAGAAGTAGCTTTTTGGAGTTATGGAGA 137
Query 61 CAGAGATTCCAAGGTCAACGGAGATATCAGAGACATTGTTGTTACCTGCGACAAATCTCG 120
| |||||||| ||||||||||||||||||||||||||||||||||| | || ||||| |
Sbjct 138 CGGAGATTCCTAGGTCAACGGAGATATCAGAGACATTGTTGTTACCAGAAACGAATCTAG 197
Query 121 ATCCCGATGAAGATGTACCCGAGTGGAAGGACCAGATCACGATCCGAGGCTTAATCTCTA 180
||| || |||| ||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 198 ATCACGGTGAATATGTACCCGAGTGGAAGGAACAGATCACGATTCGAGGCTTGATCTCTA 257
Query 181 GCGCCTTGTTAGGGATTTTGTTCTGTATCATTACCCATAAGCTCAATCTAACAATCGGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 GCGCCTTGTTAGGGATTTTGTTCTGTATCATTACCCATAAGCTCAATCTAACAATCGGAA 317
Query 241 TCATTCCTTCGCTAAACGTAGCTGCTGGTCTTCTCGGCTTCTTCTTCATCAAGTCGTGGA 300
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TCATTCCTTCGCTTAATGTAGCTGCTGGTCTTCTCGGCTTCTTCTTCATCAAGTCGTGGA 377
Query 301 CTGGGTTCTTGTCTAAATTAGGGTTTTCATCTAAACCCTTTACTAAGCAAGAGAACACTG 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 378 CTGGGTTCTTGTCTAAATTAGGGTTTTTATCTAAACCCTTTACTAAGCAAGAGAACACTG 437
Query 361 TTATTCAGACTTGTGTTGTCTCCTGTTACGGCCTTGCTTATAGCGGAGGATTTGGTTCAT 420
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 438 TTATTCAGACTTGCGTTGTCTCCTGCTACGGCCTTGCTTATAGCGGAGGATTTGGTTCGT 497
Query 421 ATTTGATAGCTATGGATGATAGGACATATAAGCTCATTGGTTCTGATTATCCTGGAAACA 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ATTTGATAGCTATGGATGAAAGGACATATAAGCTCATTGGTTCTGATTATCCTGGAAACA 557
Query 481 ATCCTGAAGATGTTATAAATCCTGGATTGTGGTGGATGACTGGGTTTTTATTTGTAGTTA 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 558 ATCCTGAAGATGTTATAAATCCTGGATTGTGGTGGATGACTGGCTTTTTATTTGTAGTTA 617
Query 541 GCTTCCTCGGTCTCTTCAGTCTCGTTCCACTTCGTAAGGTGATGATTTTGGACTACAAGC 600
||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 618 GCTTCCTCGGTCTCTTCTGTCTCGTTCCACTTCGCAAGGTGATGATTTTGGATTACAAGC 677
Query 601 TTACATATCCCAGTGGAACCGCTACAGCGATGTTGATTAACAGTTTCCACAACAACACTG 660
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 678 TTACGTATCCCAGTGGAACCGCTACAGCAATGTTGATTAACAGTTTCCACAACAATACTG 737
Query 661 GAGCTGAGCTTGCAGGAAACCAAGTTAAATGTCTTGGGAAATACCTGAGCCTTAGCTTAT 720
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 738 GAGCTGAGCTTGCAGGAAAACAAGTCAAATGTCTTGGGAAATACCTGAGCCTTAGCTTAG 797
Query 721 TTTGGAGTTGCTTCAAGTGGTTCTTCAGTGGTATTGGAGATGCATGTGGCTTTGATCACT 780
||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct 798 TTTGGAGTTGCTTCAAGTGGTTCTTTAGTGGTATTGGAGGTGCATGTGGGTTTGATCACT 857
Query 781 TTCCCACACTTGGTTTGACGCTGTTCAAGAACACGTTTTACTTTGATTTCAGTCCTACTT 840
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 858 TTCCCACACTTGGTTTGACTCTATTCAAGAACACGTTTTACTTTGATTTCAGTCCTACTT 917
Query 841 TTATTGGATGTGGTATGATATGTCCCCATTTGGTGAACTGTTCGGTTCTTCTCGGTGCTA 900
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 918 TTATTGGATGTGGCATGATATGTCCCCATTTGGTGAACTGTTCGGTTCTTCTTGGTGCTA 977
Query 901 TCATTTCTTGGGGTTTCCTCTGGCCATCCATATCACAGCATGCTGGGGATTGGTATCCAG 960
|||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 978 TCATCTCTTGGGGTTTTCTCTGGCCATTTATATCACAGCATGCTGGGGACTGGTATCCAG 1037
Query 961 CTGACCTTGAGGCCAATGATTTCAAAGGTCTCTATGGATATAAGGTCTTTATCGCCATTG 1020
|||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1038 CTGACCTTAAAGCCAACGATTTCAAAGGTCTCTATGGATATAAGGTATTTATCGCCATTT 1097
Query 1021 CTATCATCCTTGGTGACGGTCTTTACAACCTCATTAAGATCATTATTGTCACTGTGAAGG 1080
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1098 CTATCATCCTTGGTGACGGTCTCTACAACCTCATTAAGATCATTGTTGTCACTGTGAAGG 1157
Query 1081 AAATCTGCAACAAAAGCTCCAAACAACAAC-ACCTACCTGTCTTTACCGACATTTTAGAT 1139
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1158 AAATCTGCAACAAAAGCTCCAGACAAC-ACAACCTACCTGTCTTTACCGACATTTTAGAT 1216
Query 1140 AAAAGCAAGACCTCAGAATTAATGCGGGAGAAGAAGAAAAGAGATGA-CATATTTCTCAA 1198
||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1217 AAAAGTAAGACCTCAGTATTAATGCGGGAGAAGAAGAAAAGAGAT-ATCATATTTCTCAA 1275
Query 1199 GGACCGTATACCCCTCGAGTTTGCGGTTTCTGGTTATGTGGGTCTTGCAGCCATTTCAAC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1276 GGACCGTATACCCCTCGAGTTTGCGGTTTCTGGTTATGTGGGTCTTGCAGCTATTTCAAC 1335
Query 1259 TGCTATAATCCCATTGATATTCCCACCATTGAAATGGTACTTTGTCCTCTGTACATACTT 1318
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1336 CGCTATAATCCCGTTGATATTCCCACCATTGAAATGGTACTTTGTCCTCTGTTCATACTT 1395
Query 1319 AGTTGCCCCGGGTCTTGCTTTTTGCAATTCTTATGGAGCCGGGCTCACGGATATGAGCAT 1378
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1396 AGTTGCCCCGGGTCTTGCTTTTTGCAATTCTTATGGAGCCGGGCTCACAGATATGAGCAT 1455
Query 1379 GCCTTCAACCTACGGAAAGACTGGTCTTTTCATCGTTGCTTCAATTGTAGGAAATAACGG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1456 GCCTTCAACCTACGGAAAGACTGGTCTTTTCATCGTTGCTTCAATTGTAGGAAATAATGG 1515
Query 1439 TGGAGTCATTGCCGGTTTAGCAGCCTGTGGCATTATGATGTCAATCGTCTCAACTGCAGC 1498
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1516 TGGAGTCATTGCCGGTTTAGCAGCATGTGGCATTATGATGTCAATCGTCTCAACTGCAGC 1575
Query 1499 GGATCTCATGCAGGACTTTAAAACAGGTTACCTCACACTATCATCTGCAAAATCCATGTT 1558
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 GGATCTCATGCAGGATTTTAAAACAGGTTACCTCACACTATCATCTGCAAAATCCATGTT 1635
Query 1559 TGTAACTCAGCTTTTGGGTACAGCAATGGGTTGCATAATCGCCCCTCTCACGTTCTGGCT 1618
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1636 TGTAACTCAGCTTTTGGGTACAGCAATGGGTTGCATAATCGCTCCTCTCACGTTCTGGCT 1695
Query 1619 GTTTTGGACTGCTTTTGACATTGGAGATCCTGATGGTCTATACAAAGCACCTTACGCAGT 1678
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1696 GTTTTGGACTGCTTTTGATATTGGAGATCCTGATGGTCTATACAAAGCACCTTACGCGGT 1755
Query 1679 TATCTACCGCGAAATGGCTATCCTCGGGATCGAGGGCTTTACAAAACTGCCCAAGCACTG 1738
|||||||||||||||||||| |||||| |||| |||||| | ||||||||||| |||||
Sbjct 1756 CATCTACCGCGAAATGGCTATTCTCGGGGTCGAAGGCTTTGCCAAACTGCCCAAACACTG 1815
Query 1739 TTTGGCTCTATGTTGCGGATTCTTCATCGCTTCTCTGATTGTAAATCTAATTAGAGAAAT 1798
|||||| || ||||| ||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1816 TTTGGCACTTTGTTGTGGATTCTTCATCGCTGCTCTGATTGTAAATCTAATTAGAGACAT 1875
Query 1799 CACACCACCAAAGATCTCTAAGTTAATACCACTTCCAATGGCTATGGCTGGTCCATTTTA 1858
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1876 GACACCACCAAAGATCTCTAAGTTGATACCACTTCCAATGGCAATGGCTGGTCCATTCTA 1935
Query 1859 CATAGGAGCATACTTCACCATCGACATGTTCATAGGAACCGTGATTATGTTCGTATGGGA 1918
||||||||| |||||| |||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 1936 CATAGGAGCTTACTTCGCCATCGACATGTTCGTAGGAACCGTGATAATGCTCGTATGGGA 1995
Query 1919 ACGGATGAATAAGAAAGACGCAGATGATTACTCGGGTGCAGTAGCTTCAGGACTGATCTG 1978
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1996 ACGGATGAATAAGAAAGACGCAGATGATTACTCGGGTGCAGTAGCTTCAGGTCTGATCTG 2055
Query 1979 CGGCGATGGAATCTGGACCATCCCATCCGCAGTTCTTTCAATATTAAGAATCAATCCACC 2038
||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2056 CGGAGATGGAATTTGGACCATCCCATCCGCAATTCTTTCTATATTAAGAATCAATCCACC 2115
Query 2039 CATCTGTATGTACTTTGGACCATCCTAGACATTGTTATCATATTAAAAGTTTGTTGCATT 2098
||| |||||||||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct 2116 CATTTGTATGTACTTTAGACCATCCTAGACATTGTTATCATGTTAAAAATTTGTTGCATT 2175
Query 2099 AT 2100
||
Sbjct 2176 AT 2177
> AT3G27020.1 | Symbols: YSL6 | YELLOW STRIPE like 6 | chr3:9961319-9964597
REVERSE LENGTH=2471
Length=2471
Score = 1834 bits (993), Expect = 0.0
Identities = 1643/1956 (84%), Gaps = 48/1956 (2%)
Strand=Plus/Plus
Query 133 ATGTACCCGAGTGGAAGGACCAGATCACGATCCGAGGCTTAATCTC-T-AGCGCCTTGTT 190
||||||| |||||||| || ||||| ||||| ||||| |||| | | | || || ||| |
Sbjct 225 ATGTACCTGAGTGGAAAGAGCAGATAACGATTCGAGGATTAA-C-CGTGAGTGCGTTGCT 282
Query 191 AGGGATTTTGTTCTGTATCATTACCCATAAGCTCAATCTAACAATCGGAATCATTCCTTC 250
|||| |||||||||||||||||| ||||| || ||||| || | |||||||| || ||
Sbjct 283 CGGGACTTTGTTCTGTATCATTACTCATAAACTAAATCTGACGGTTGGAATCATCCCGTC 342
Query 251 GCTAAACGTAGCTGCTGGTCTT-CTCGGCTTCTTCTTCATCAAGTCGTGGACTGGGTTCT 309
| | ||||| ||||| || || ||||| ||||||||| | |||||||||||||| ||||
Sbjct 343 GTTGAACGTCGCTGC-GGGATTACTCGGTTTCTTCTTCGTTAAGTCGTGGACTGGTTTCT 401
Query 310 TGTCTAAATTAGGGTTTTCATCTAAACCCTTT-ACTAAGCAAGAGAACACTGTTATTCAG 368
| || || |||||||| || | || ||||| ||||||||||||||||| |||||||||
Sbjct 402 TATCGAAGCTAGGGTTTACA-GTGAAGCCTTTCACTAAGCAAGAGAACACCGTTATTCAG 460
Query 369 ACTTGTGTTGTCTCCTGTTACGGCCTTG-CTTATAGCGGAGGATTTGGTTCATATTTGAT 427
|||||||||||| | || || ||||| | ||| |||||||||||||||||||||||||||
Sbjct 461 ACTTGTGTTGTCGCTTGCTATGGCCTCGCCTT-TAGCGGAGGATTTGGTTCATATTTGAT 519
Query 428 AGCTATGGATGATAGGACATATAAGCTCATTGGTTCTGATTATCCTGGAAACAATCCTGA 487
||||||||||| | ||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 520 TGCTATGGATGAGAAGACATATAAGCTCATTGGTGCTGATTATCCTGGAAACCATGCAGA 579
Query 488 AGATGTTATAAATCCTGGATTGTGGTGGATGACTGGGTTTTTATTTGTAGTTAGCTTCCT 547
||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| |
Sbjct 580 AGATGTTATAAATCCAGGATTGTGGTGGATGATTGGGTTTTTATTTGTAGTCAGCTTCTT 639
Query 548 CGGTCTCTTCAGTCTCGTTCCACTT-CGTAAGGTGATGATTTTGGACTACAAGCTTACAT 606
|| ||||| ||||||||||| || || ||||||||| ||||||||||||| ||||| |
Sbjct 640 GGGACTCTTTAGTCTCGTTCC-GTTACGCAAGGTGATGGTTTTGGACTACAAACTTACTT 698
Query 607 ATCCCAGTGGAACCGCTACAGCGATGTTGATTAACAGTTTCCACAACAACACTGGAGCTG 666
|||| ||||||||||| ||||| ||||||||||| || ||||||| ||||||||||||||
Sbjct 699 ATCCTAGTGGAACCGCCACAGCAATGTTGATTAATAGCTTCCACACCAACACTGGAGCTG 758
Query 667 AGCTTGCAGGAAACCAAGTTAAATGTCTTGGGAAATACCTGAGCCTTAGCTTATTTTGGA 726
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 759 AGCTTGCAGGGAACCAGGTTAAATGTCTTGGAAAATACCTGAGCCTTAGCTTAATTTGGA 818
Query 727 GTTGCTTCAAGTGGTTCTTCAGTGGTATTGGAGATGCATGTGGCTTTGATCACTTTCCCA 786
|||| ||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||
Sbjct 819 GTTGTTTCAAATGGTTCTTCAGTGGTATTGGAGATGCATGTGGATTTGATAACTTCCCCA 878
Query 787 CACTTGGTTTGACGCTGTTCAAGAACACGTTTTACTTTGATTTCAGTCCTACTTTTATTG 846
| |||||||||||| | ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 879 CCCTTGGTTTGACGTTATTCAAGAACACGTTTTACTTTGACTTCAGTCCTACTTATATTG 938
Query 847 GATGTGGTATGATATGTCCCCATTTGGTGAACTGTTCGGTTCTTCTCGGTGCTATCATTT 906
|||| || | ||||| |||||| | |||||||| ||||||||||||||||| |||||||
Sbjct 939 GATGCGGCCTTATATGCCCCCATATAGTGAACTGCTCGGTTCTTCTCGGTGCGATCATTT 998
Query 907 CTTGGGGT-TTCCTCTGGCCATCCATATCACAGCATGCTGGGGATTGGTATCCAGCTGAC 965
||||||| ||| | ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 999 CTTGGGGGATTC-TATGGCCATTTGTATCACAGCATGCTGGGGATTGGTATCCTGCTGAC 1057
Query 966 CTTGAGG-CCAATGATTTCAAAGGTCTCTATGGATATAAGGTCTTTATCGCCATTGCTAT 1024
|||| || |||| ||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1058 CTTG-GGTCCAACGATTTCAAAGGTCTCTACGGGTATAAGGTCTTTATCGCCATTGCCAT 1116
Query 1025 CATCCTTGGTGACGGTCTTTACAACCTCATTAAGATCATTATTGTCACTGTGAAGGAAAT 1084
||||||||||| ||||||||||| || | |||||||| |||||||||||||||| |
Sbjct 1117 TATCCTTGGTGATGGTCTTTACAATCTTGTCAAGATCATCGCTGTCACTGTGAAGGAATT 1176
Query 1085 CTGCAACAAAAGCTCCAAACAACAACAC-CTACCTGTCT-TTACCGACATTTTAGATAAA 1142
|||| || || || | || || || ||||| | | |||||||| | ||||| |
Sbjct 1177 ATGCAGCAGCAGGTCTAGACGACT-CAATCTACCCAT-TGTTACCGACGGTGTAGATGAC 1234
Query 1143 AGC-AAGACCTCAGA-ATTAATGCGGGAGAAGAAGAAAAGAGATGACA-TATTTCTCAAG 1199
|| ||| | || || || | ||| || |||||||||||||||||| | | ||||| |||
Sbjct 1235 AGTGAAG-CTTCTGAGAT-ACTGCTGGTGAAGAAGAAAAGAGATGA-AGTGTTTCTGAAG 1291
Query 1200 GACCGTATACCCCTCGAGTTTGCGGTTTCTGGTTATGTGGGTCTTGCAGCCATTTCAACT 1259
|||||||||||||| || |||||| || |||||||||||||||||||||| || ||||||
Sbjct 1292 GACCGTATACCCCTTGAATTTGCGATTGCTGGTTATGTGGGTCTTGCAGCTATCTCAACT 1351
Query 1260 GCTATAATCCCATTGATATTCCCACCATTGAAATGGTACTTTGTCCTCTGTACATACTT- 1318
|| | ||||||| | ||||| |||||| ||||||||||||||||||| ||| | || ||
Sbjct 1352 GCCACAATCCCAATAATATTTCCACCACTGAAATGGTACTTTGTCCTGTGTTCTTATTTC 1411
Query 1319 AGTTGC-CCCGGGTCTTGCTTTTTGCAATTCTTATGGAGCCGGGCTCACGGATATG-AGC 1376
| |||| |||| ||| || || ||||| ||||||||| | |||||||| || || |||
Sbjct 1412 A-TTGCACCCGC-TCTCGCCTTCTGCAACTCTTATGGAACGGGGCTCACAGAC-TGGAGC 1468
Query 1377 AT-GCCTTCAACCTACGGAAAGA-CTGGTCTTTTCATCGTTGCTTCAATTGTAGGAAATA 1434
| || | ||||||| ||||||| | ||||||||||| | ||||| ||||||||| |
Sbjct 1469 CTAGCAT-CAACCTATGGAAAGATC-GGTCTTTTCATAATCGCTTCCGTTGTAGGAAGTG 1526
Query 1435 ACGGTGGAGTCATTGCCGGTTTAGCAGCCTGTGGCATTATGATGTCAATCGTCTCAACTG 1494
| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||| || |
Sbjct 1527 ATGGTGGTGTCATTGCGGGTTTAGCTGCCTGTGGTGTTATGATGTCAATCGTCTCCACCG 1586
Query 1495 CAGCGGATCTCATGCAGGACTTTAAAACAGGTTACCTCACACTATCATCTGCAAAATCCA 1554
|||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 1587 CAGCTGATCTCATGCAAGACTTCAAAACAGGTTACCTCACTTTATCATCTGCAAAGTCCA 1646
Query 1555 TGTTTGTAA-CTCAGCTTTTGGGTACAGCAATGGGTTGCATAATCGCCCCTCTCACGTTC 1613
||||||||| | ||||| |||| || |||||||| || ||||||| || ||||| |||
Sbjct 1647 TGTTTGTAAGC-CAGCTCGTGGGAACCGCAATGGGCTGTGTAATCGCTCCACTCACATTC 1705
Query 1614 TGGCTGTTTTGGACTGCTTTTGACATTGGAGATCCTGATGGTCTATACAAAGCACCTTAC 1673
|||||||| |||||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 1706 TGGCTGTTCTGGACTGCCTTTGACATTGGAGATCCCAATGGTCCGTACAAAGCACCTTAC 1765
Query 1674 GCAGTTATCTACCGCGAAATGGCTATCCTCGGGATCGAGGGCTTTACAAAACTGCCCAAG 1733
||||| || | ||| |||||||| || ||||| || ||||||||| | || |||| |||
Sbjct 1766 GCAGTGATTTTCCGTGAAATGGCGATTCTCGGAATTGAGGGCTTTGCTGAATTGCCTAAG 1825
Query 1734 CACTGTTTGGCTCTATGTTGCGGATTCTTCATCGCTTCTCTGATTGTAAATCTAATTA-G 1792
|||||||||||||| |||| ||| || ||||| || || ||||||| ||||| ||| |
Sbjct 1826 CACTGTTTGGCTCTTTGTTACGGGTTTTTCATAGCAGCTTTGATTGTGAATCTC-TTAAG 1884
Query 1793 AGAAATCACACCACCAAAGATCTCTAAGTTAATACC-ACTTCCAATGGCTATGGCTGGTC 1851
||| || ||||| || ||||||||| |||| || || | | |||||||| ||||||| ||
Sbjct 1885 AGATATTACACCGCCTAAGATCTCTCAGTTCATCCCGA-TCCCAATGGCAATGGCTG-TC 1942
Query 1852 C-ATTTTACATAGGAGCATACTTCACCATCGACATGTTCATAGGAACCGTGATTAT-GTT 1909
| ||| ||||| ||||| |||||| |||| |||||||| | || || ||||| || |||
Sbjct 1943 CCATTCTACATTGGAGCTTACTTCGCCATTGACATGTTTGTTGGGACTGTGAT-ATTGTT 2001
Query 1910 CGTATGGGAACGGATGAATAAGAAAGACGCAGATGA-TTACTCGGGTGCAGTAGCTTCAG 1968
||||||||||||||| || | |||||| ||||| || || | ||||||||||| ||||
Sbjct 2002 CGTATGGGAACGGATCAACAGGAAAGATGCAGAGGACTTTG-CAGGTGCAGTAGCATCAG 2060
Query 1969 GACTGATCTGCGGCGATGGAATCTGGACCATCCCATCCGCAGTTCTTTCAATATTAAGAA 2028
|||||||||| || ||||| |||||||| || ||||||||| | |||||||| ||||| |
Sbjct 2061 GACTGATCTGTGGTGATGGGATCTGGACTATACCATCCGCAATCCTTTCAATCTTAAGGA 2120
Query 2029 TCAATCCACCCATCTGTATGTACTTTGGACCATCCT 2064
|||| || ||||| ||||||||||||||||| ||||
Sbjct 2121 TCAACCCTCCCATTTGTATGTACTTTGGACCGTCCT 2156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104115930330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5