BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493879
Length=443
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40970.1 | Symbols: | Protein of unknown function (DUF 3339... 662 0.0
AT3G27030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 143 2e-33
> AT5G40970.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:16414038-16414504 FORWARD LENGTH=467
Length=467
Score = 662 bits (358), Expect = 0.0
Identities = 420/449 (94%), Gaps = 7/449 (2%)
Strand=Plus/Plus
Query 1 TTTTACGTTTTCTACTTCACAGCAATGGCGGATTGGGCTCCAGTTCTCGTCGGAGTTGTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 TTTTACGTTTTCTACTTCACAGCAATGGCGGATTGGGCTCCAGTTCTCGTCGGAGTTGTA 79
Query 61 TTATTCGTGCTCCTTTCTCCAGGTCTCCTTTTCTCGTTGCCCGGACTTCACCACACTCTC 120
|||||||| |||||||||| || || ||||||||||||||||||| |||||| ||||||
Sbjct 80 TTATTCGTTATCCTTTCTCCGGGACTTCTTTTCTCGTTGCCCGGACATCACCATACTCTC 139
Query 121 CAATTCGGCGGCATGAAAACCAACGGCAAAGCTATCGCCGTTCACACACTCATTTTCTTC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 140 CAATTCGGCGGCATGAAAACCAACGGCAAAGCCATCGCCGTTCACACACTCATCTTCTTC 199
Query 181 GCTGCTTACACGATCTTGATCCTCGCTGTCAATCTCCACATCACAACCGGCTGATTTATA 240
||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 200 GCTGCTTACACCATCTTGATCCTCGCTGTCAATCTCCACATCACTACCGGCTAATTTAT- 258
Query 241 GGG-CGAAATAAAGGTAACCCTTTTGCTGAATCT--GCTGAGT-TCT-TCAGTAATCTTC 295
||| |||||||||||||||||||||||||||||| ||| | || |||| |||||||
Sbjct 259 GGGCCGAAATAAAGGTAACCCTTTTGCTGAATCTGAGCTCTCTCCCTCTCAGGAATCTTC 318
Query 296 TGAGATCTGGAACTCTGTTTTTAGGGATTTGTATACTTTACTCTGTTCTCTAGTTTGTGT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 TGAGATCTGGAACTCTGTTTTTAGGGATTTGTATACTTTACTCTGTTCTCTAGTTTGTGT 378
Query 356 TGTGCATTGAGTTTTTACTGAAAA-TGTAATAATTATTAAGCTTGTATTGTTGTGATTAA 414
||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||| |||||
Sbjct 379 TGTGCATTGAGTTAATACTGAAAAATGTAATAATCATTAAGCTTGTATTGATGTCATTAA 438
Query 415 GTTATAATGCAAAATTTGATGTTTGATTC 443
|||||||||||||||||||||||||||||
Sbjct 439 GTTATAATGCAAAATTTGATGTTTGATTC 467
> AT3G27030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3339 (InterPro:IPR021775);
BEST Arabidopsis thaliana protein match is: Protein of unknown
function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast
hits to 271 proteins in 16 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:9972508-9974225
REVERSE LENGTH=429
Length=429
Score = 143 bits (77), Expect = 2e-33
Identities = 171/216 (79%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 23 CAATGGCGGATTGGGCTCCAGTTCTCGTCGGAGTTGTATTATTCGTGCTCCTTTCTCCAG 82
||||||||||||||||||||||||||||||| || || | |||||| | || || || |
Sbjct 218 CAATGGCGGATTGGGCTCCAGTTCTCGTCGGCGTGGTCCTGTTCGTGATTCTCTCACCGG 277
Query 83 GTCTCCTTTTCTCGTTGCCCGG-ACTTCA-CCACACTC-TCCAATTCGGCGGCATGAAAA 139
| || || ||||| || || || | || || ||| | | | ||||| ||| | ||||
Sbjct 278 GACTTCTCTTCTCATTACCTGGTAA--CAACCGCAC-CGTAGATTTCGGTGGCCTCAAAA 334
Query 140 CCAACGGCAAAGCTATCGCCGTTCACACACTCATTTTCTTCGCTGCTTACACGATCTTGA 199
||||||||||||| ||||| |||||||| ||||| |||||||| |||||| || || |
Sbjct 335 CCAACGGCAAAGCCATCGCTGTTCACACTCTCATCTTCTTCGCCATTTACACCATTTTAA 394
Query 200 TCCTCGCTGTCAATCTCCACATC-ACAACCGGCTGA 234
||||||| |||||||||||||| ||| | ||||||
Sbjct 395 TCCTCGCCCTCAATCTCCACATCTACA-CTGGCTGA 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21062186831
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5