BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493880
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40950.1 | Symbols: RPL27 | ribosomal protein large subunit ... 1094 0.0
> AT5G40950.1 | Symbols: RPL27 | ribosomal protein large subunit
27 | chr5:16410782-16412063 FORWARD LENGTH=899
Length=899
Score = 1094 bits (592), Expect = 0.0
Identities = 715/775 (92%), Gaps = 6/775 (1%)
Strand=Plus/Plus
Query 1 AAAACCCTAATTTCTCCATTTCCAAATTCAAACGAATTCTCTGCTGATTTTAGCAATGGC 60
|||||||||||||||||||||| ||| || ||||||||||||| |||||||| |||||||
Sbjct 30 AAAACCCTAATTTCTCCATTTCGAAACTCCAACGAATTCTCTGGTGATTTTACCAATGGC 89
Query 61 GATGGCAACATCGATGACTTTGAATCTAGTTGGGGCATTCAAAGGCTTGTCTCTCTCTTC 120
||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 90 GATGGCAACATCGATGAGTTTGAATCTAATTGGGGCATTCAAAGGCTTGTCTCTTTCTTC 149
Query 121 AACCTCGTCTTTTCTCAGAGGCGATTTGAATTTTAGCCCGAAAACAACTTTCACCGTTAC 180
|| ||||||||||| ||||||||||||| |||| ||| ||||| ||||||| || ||
Sbjct 150 GACTTCGTCTTTTCTTAGAGGCGATTTGAGTTTTTCCCCCAAAACCTCTTTCACGGTGAC 209
Query 181 TCTTCCTTTGGAAAATCTTCAAGCTCCGATTCCGTTGACGATTGAGTCGGCCCACAAGAA 240
||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 210 TCTTCCTCTGGAAAATCTTCAAGCTCCGATTCCGTTGACAATTGAATCGGCCCATAAGAA 269
Query 241 AGGAGCTGGTAGTACTAAGAACGGTCGTGATTCTCCTGGGCAACGACTCGGCGTCAAGAT 300
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 AGGAGCTGGTAGCACCAAGAACGGTCGTGATTCTCCTGGGCAACGACTCGGCGTCAAGAT 329
Query 301 TTACGGAGACCAAGTCGCTAAACCTGGCGCCATCATTGTTCGTCAACGTGGCACTAAGTT 360
||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 330 CTACGGTGACCAAGTTGCTAAACCTGGTGCTATCATTGTTCGTCAACGTGGCACTAAGTT 389
Query 361 TCATGCTGGGAAAAATGTTGGGATTGGTAAAGATCATACCATCTTCTCTTTAATCGATGG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CCATGCTGGGAAAAATGTTGGGATTGGTAAAGATCATACCATCTTCTCTTTAATCGATGG 449
Query 421 ATTAGTCAAGTTTGAGAAGTTTGGCCCTGACAGGAAGCAGATTAGTGTGTATCCAAGGGA 480
|||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||
Sbjct 450 ATTAGTCAAGTTCGAGAAGTTTGGTCCTGACAGGAAGAAGATAAGTGTGTATCCAAGAGA 509
Query 481 AGTTGTGCCAGAGAATCCCAACAGCTACagagcaagaaagagagagaattttagattgca 540
| |||| |||||||||||||| ||||||||||||||||||||||| || || ||||||||
Sbjct 510 AATTGTACCAGAGAATCCCAATAGCTACAGAGCAAGAAAGAGAGAAAACTTCAGATTGCA 569
Query 541 aagggagaagaagaaggcgagacgcgagaaTTACACTTACACACTTCCTACACCTGAACT 600
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 570 AAGGGAGAAGAAGAAGGCGAGACGCGAGAATTACTCGTACACACTTCCTACACCAGAACT 629
Query 601 TGTTCTTGCATCTGCATCAATCGATGATGCTGAAACCAATCCGGAGTGCTAGATGATCGA 660
||||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||| ||
Sbjct 630 TGTTCTTGCATCTGCCTCAGTCGATGATGCTGAAGCCAATCCGGAGTGCTAGAAGATTGA 689
Query 661 ATGTGAAGTTTTCCTTGTCTCTTTTATGTTTAGTCTTGTTCATGAAAA-TGATCCTTTCA 719
||||| ||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 690 ATGTGGAGTTT-CCTTGTCTCTTTT-TGTTTAGTCTTGTTTATGAAAAATGATCCTTTCA 747
Query 720 GAGTTTTAAGAGTTG-TTGTATGTGTCTAAATCCAAGCCTCTCTTTTGTCAAATT 773
|||| |||||||||| |||||| |||| || ||||||||||||||||||||||||
Sbjct 748 GAGTATTAAGAGTTGGTTGTAT-TGTCGAA-TCCAAGCCTCTCTTTTGTCAAATT 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37575141956
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5