BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493882
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40940.1 | Symbols: FLA20 | putative fasciclin-like arabinog... 1759 0.0
> AT5G40940.1 | Symbols: FLA20 | putative fasciclin-like arabinogalactan
protein 20 | chr5:16406656-16407930 REVERSE LENGTH=1275
Length=1275
Score = 1759 bits (952), Expect = 0.0
Identities = 1175/1280 (92%), Gaps = 25/1280 (2%)
Strand=Plus/Plus
Query 1 ATGAATAAAAAGCCCAGTAAATATTTTCCCGCTCTTAAATAGGACGGAC--TAAACGCTG 58
|||||||||||||||||||||||||||||| ||||| |||||||||||| |||| |||
Sbjct 1 ATGAATAAAAAGCCCAGTAAATATTTTCCCTCTCTT-AATAGGACGGACTATAAAAACTG 59
Query 59 TAACTTCCCCTGCAACGGCTTTTCTCAAGAAAACAGaa--aaaaaaaaaGCTCGAAGAAC 116
|||||||| ||||||||||||||||| |||| || || ||||||||||||||||||||
Sbjct 60 TAACTTCCTCTGCAACGGCTTTTCTC-TGAAACCA-AACGAAAAAAAAAGCTCGAAGAAC 117
Query 117 GCATCAATGGCGTCGAAGCTTCTAACGACCTTCTTCTTCCTATTTTTCGTTCTCGAT--C 174
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 118 GCATCAATGGCGTCGAAGCTTCTAACGACCTTCTTCCTCATATTTTTCGTTCTCGATATC 177
Query 175 --TC--GTCGCACCTTCTCTGACATCTGTTTCATCCGCCGTAGAAGTGCTCTCCGATTCT 230
|| |||||| ||||| |||||||||||||||||||||| ||||| || ||||||||
Sbjct 178 GATCTCGTCGCAACTTCTATGACATCTGTTTCATCCGCCGTGGAAGTTCTTTCCGATTCC 237
Query 231 GGCTACTTATCCATGGGACTCACTCTACAGCTCGCGAATCAAGATCTAAACCTCGAAGAT 290
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 238 GGCTACTTATCCATGGGACTCACACTAAAGCTCGCGAATCAAGATCTAAACCTCGAAGAT 297
Query 291 TGGCAAGAACTCACCATCTTCGCACCTTCTGATCAAGATTTCTCCA-GATTTGGTCAACC 349
||||||||||||||| |||||||||||||||||||| |||||| | | |||||||||||
Sbjct 298 TGGCAAGAACTCACCCTCTTCGCACCTTCTGATCAATCTTTCTCTAAG-TTTGGTCAACC 356
Query 350 TTCGCTTCTCGATATCAAATACCAGCTCTCTCCGACGAGACTTCCC-GGAGAAACCCTAA 408
||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||| |||
Sbjct 357 TTCGCTTCTCGATATGAAGTACCAGCTCTCTCCGACGAGACT-CCCAGGAGAAACCTTAA 415
Query 409 GAAACCTCCCAAATGGCGTCAAAATCCCTACTCTCAGATCTGATTCCTCTCTAACCGTCA 468
|||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||
Sbjct 416 GAAACCTCCCAAATGGCGCCAAAATCCCTACTCTCAGATCTAATTACTCTCTAACCGTCA 475
Query 469 CAAATTCTTCACGATTCGGACGTATAATTTCGATCAACAACGTCGTAGTTCATGATTCTC 528
| |||||||||||||||||| ||| || ||||||||||||||||||||| || |||||||
Sbjct 476 CGAATTCTTCACGATTCGGAGGTAAAACTTCGATCAACAACGTCGTAGTCCAAGATTCTC 535
Query 529 CTGTTTTTGACGACGGCTACATCGTGATTTACGGATCCGGCGAGTTTTTCACATCCCCGA 588
|||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||
Sbjct 536 CTGTTTTTGACGACGGATACGTCGTGATTTACGGATCCGACGAGTTTTTCACATCACCGA 595
Query 589 CGAAGATCTCCGACGATTCATCATCGTCTTCTTCAATCCCAAACACTACCTCATCTACTG 648
|||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct 596 CGAAAATCTCCGACGATTCATCATCTTCTTCTTCAATCCCAAGCACTACTTCATCTACTG 655
Query 649 GTTCAATCCCTATCCCTAGTTCAGCGACTCACACACCTCCAAGTCCTAA-ATTCGCTTCC 707
||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||
Sbjct 656 GTTCAATCCCTATCCCTAGCTCAGCGACTCAAACACCTCCAAGTCCTAATAT-CGCTTCG 714
Query 708 GATTCCACTCGAAATCTTCCAAATGGATCAAAACCAGTGAATTGCTTCAACAACTTTGAA 767
|||||||||||||||||||| ||| |||| |||||||||||| ||||||||| |||||||
Sbjct 715 GATTCCACTCGAAATCTTCCCAATAGATCTAAACCAGTGAATCGCTTCAACATCTTTGAA 774
Query 768 TCGGCATCAAGATTGTTAATGTCAAGAGGTTTCGTGATCATAGCTACGTTTCTCGCTCTG 827
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 775 TCGGCTTCAAGATTGTTAATGTCGAGAGGTTTCGTGATTATAGCTACGTTTCTCGCTCTG 834
Query 828 CAATTAGAAGATA---CTTCAGGAAACGACACGAAGATCACAGTCTTTGCTCCAATCGAC 884
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 CAATTAGAAGATAATACTTCAGGAAACGACACGAAGATCACAGTCTTTGCTCCGATCGAC 894
Query 885 GAAGCAATTCCAAATCCAAGTACCAAATTCTCCGATTACGTTACTATTTTCAGAGGACAT 944
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 895 GAAGCAATTCCAAATCCAACTACTAAATTCTCCGATTACGTTACTATTTTCAGAGGACAT 954
Query 945 GTAATCAATCGACTTCTTTTATGGAAAGATCTTCAGAAATTGGCTAAGGAAGGAGCGATT 1004
|| ||| || |||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 955 GTTGTCAGTCAACTTCTCTTATGGAAAGATCTTCAGAAATTTGCTAAGGAAGGATCGATT 1014
Query 1005 CTGCAAAGTGTTCTTAAAGGGTATGAAATTGAGGTTTCTTGGTCTGGTGATATACTTCTT 1064
||||| | |||||||||||||||||| |||||| |||||| ||| |||||||||||||||
Sbjct 1015 CTGCAGACTGTTCTTAAAGGGTATGAGATTGAGATTTCTTTGTCCGGTGATATACTTCTT 1074
Query 1065 CTTAATGGATTTCCACTCATATATCCAGATTTGTTTGTCAACGATTGGATTGCTGTTCAT 1124
|| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1075 CTCAATGGAGTTCCACTCATATATCCAGATTTGTATGTCAACGATTGGATTGCTGTTCAT 1134
Query 1125 GGCTTTAATCAGATGATTGTTCCGAAAGAGAAACAGGTTAATTTGGGAGAGTCTATCACA 1184
|||||||||||||||||||| | |||||||||||||| || ||||||| |||||||||
Sbjct 1135 GGCTTTAATCAGATGATTGTAACAAAAGAGAAACAGGTGGATGTGGGAGATTCTATCACA 1194
Query 1185 GTGCTAAACAATGGagaagaagaagaagaagaagGTGTTCATGAAGAGTACTCTTCTGAG 1244
|||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||
Sbjct 1195 GTGCTAAACAATGGAGAACAAGAAGAAGAAG--G-TGTTCATGGAGAGTACTCTTCTGAG 1251
Query 1245 TTGGGTGACTATGGTCTTCA 1264
|| |||||||||||||||||
Sbjct 1252 TTAGGTGACTATGGTCTTCA 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62148274710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5