BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493890 Length=1845 Score E Sequences producing significant alignments: (Bits) Value AT5G40870.1 | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine kin... 2739 0.0 AT3G27190.1 | Symbols: UKL2 | uridine kinase-like 2 | chr3:1003... 1563 0.0 AT5G34560.1 | Symbols: | pseudogene, uridine kinase/uracil pho... 100 4e-20 > AT5G40870.1 | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine kinase/uracil phosphoribosyltransferase 1 | chr5:16374908-16378652 FORWARD LENGTH=1842 Length=1842 Score = 2739 bits (1483), Expect = 0.0 Identities = 1740/1859 (94%), Gaps = 37/1859 (2%) Strand=Plus/Plus Query 1 CGTTGAACAGAATCGTTGTCACTTG-TCAGTCTTCACTACGGAGCTGttttttttCGATT 59 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 CGTTGAACAGAATCGTTGTCACTTGTTCAGTCTTCACTACGGAGCTGTTTTTTTTCGATT 60 Query 60 CGCCGGAAAAATCACAAATTTCAAATTCTGCAACCACCGATTCATCGGAATCCAATGCCG 119 |||||||||||||| ||| | |||| ||| |||||||| || |||| |||||||||||| Sbjct 61 CGCCGGAAAAATCATAAAATCCAAA-TCTACAACCACCTTTTTATCGCAATCCAATGCCG 119 Query 120 GAGGATTCTTCTTCAATAGACTACGCGATGGAGAAGGCATCGGGGCCTCACTTCTCCGGT 179 || ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 120 GAAGATTCTTCTTCTTTAGACTACGCGATGGAGAAGGCATCAGGGCCTCACTTCTCCGGT 179 Query 180 CTTCGCTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCCGCCGTCTCTTCACTT 239 |||||||||||||||||||||||||||||||||||||||||||||| || || | | Sbjct 180 CTTCGCTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCCGTCG--TC-T--C-- 232 Query 240 TCTCACCTCCGATCAGCCGTTTCTTCCTCTTCTCCGGCTTCTTCCGATCCCGACGCTCCC 299 | ||| ||||||||||| |||||||| ||||||||| |||||||||||||||| || || Sbjct 233 T-TCA-CTCCGATCAGCTGTTTCTTCTTCTTCTCCGTCTTCTTCCGATCCCGAAGCGCCT 290 Query 300 AAACAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTAAAACCACAGTCTGC 359 || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 291 AAGCAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTAAGACCACGGTCTGT 350 Query 360 GATATGATAATCCAGCAACTTCATGATCATCGTGTTGTTCTAGTTAATCAGGATTCCTTT 419 || ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| Sbjct 351 GACATGATAATCCAGCAACTTCATGACCATCGTGTCGTTTTAGTTAATCAGGATTCCTTT 410 Query 420 TATCGTGGTTTGACATCTGAGGAGTTGCAGCGTGTGCAAGAGTACAACTTTGATCATCCC 479 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 411 TATCGTGGTTTGACATCTGAGGAGTTGCAGCGTGTGCAAGAGTATAACTTTGATCATCCT 470 Query 480 GATGCTTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACTCTCAAGAGCGGGCAACCC 539 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 GATGCGTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACTCTCAAGAGCGGGCAACCC 530 Query 540 TATCAAGTTCCAATCTACGACTTTAAGACCCATCAACGTAGATCTGATACTTTCCGCCAG 599 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 531 TATCAAGTTCCAATCTATGACTTTAAGACTCATCAACGTAGATCTGATACTTTCCGCCAG 590 Query 600 GTCAATGCTTCTGATGTTATAATATTGGAAGGGATTCTAGTTTTCCATGACTCACGAGTT 659 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 591 GTCAATGCTTCTGATGTAATAATATTGGAAGGGATTCTAGTTTTCCATGACTCACGAGTT 650 Query 660 CGGAATCTGATGAATATGAAGGTCTTTGTTGATACAGATGCTGATGTAAGGCTTGCTCGC 719 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 651 CGGAATCTGATGAATATGAAGATCTTTGTTGATACAGATGCTGATGTAAGGCTTGCTCGC 710 Query 720 AGAATCAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTCTGTGCTTGAACAGTAT 779 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 AGAATTAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTCTGTGCTTGAACAGTAT 770 Query 780 GCAAAGTTTGTGAAGCCGGCATTTGATGACTTTGTGCTCCCCTCGAAGAAATATGCTGAC 839 |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct 771 GCAAAGTTTGTGAAGCCGGCATTTGATGACTTCGTGCTCCCTTCAAAGAAATATGCTGAC 830 Query 840 GTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTTGATTACACAACATATC 899 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 831 GTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTTGATTACGCAACATATC 890 Query 900 CACACAAAACTTGGGCAGCATGATCTGTGCAAAATCTACCCAAATGTTTACGTCATCCAA 959 |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| Sbjct 891 CACACAAAACTTGGGCAGCATGATCTCTGCAAAATCTACCCAAATGTTTATGTTATCCAG 950 Query 960 TCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAGAAGGACATATCAAAGCAT 1019 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 951 TCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAAAAGGACATATCAAAGCAT 1010 Query 1020 GATTTTGTGTTTTATTCAGATCGACTCATTCGTCTGGTTGTGGAGCATGGTCTTGGTCAT 1079 || |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 1011 GACTTTGTGTTTTATTCAGATAGACTCATTCGTCTGGTCGTGGAGCATGGTCTTGGTCAT 1070 Query 1080 TTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGCGCTGTATATACCGGTGTTGAT 1139 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1071 TTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGAGCTGTATATACCGGTGTTGAT 1130 Query 1140 TTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGAAAGCATGGAAAATGCA 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 TTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGAAAGCATGGAAAATGCA 1190 Query 1200 TTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATCCACCGTGATGGCGAC 1259 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 TTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATCCACCGTGATGGCGAT 1250 Query 1260 AATGGAAAACAGCTTATTTATGAGAAGCTTCCTCACGACATCTCTGAACGCCATGTCCTG 1319 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1251 AATGGAAAACAGCTTATTTATGAGAAGCTTCCTCACGACATATCTGAACGCCATGTCCTG 1310 Query 1320 CTTCTAGATCCTGTCTTAGCCACAGGTAACTCTGCAAATCAAGCCATTGAATTACTTATA 1379 |||||||||||||||||||||||||||||||| || ||||||||||||||| |||| ||| Sbjct 1311 CTTCTAGATCCTGTCTTAGCCACAGGTAACTCGGCTAATCAAGCCATTGAACTACTCATA 1370 Query 1380 CAGAAAGGAGTTCCTGAATCTCACATTATATTCCTCAACCTTATCTCGGCACCGGAGGGA 1439 |||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1371 CAGAAAGGTGTTCCTGAAGCTCACATTATATTCCTCAACCTTATATCGGCGCCGGAGGGA 1430 Query 1440 ATCCACTGTGTCTGCAAACGTTTTCCAGCATTGAAGATAGTGACGTCTGAAATAGACCAG 1499 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1431 ATCCACTGTGTCTGCAAACGTTTTCCAGCATTGAAAATTGTGACGTCTGAAATAGACCAA 1490 Query 1500 TGTCTAAACCAAGAGTTCCGAGTTATACCGGGCTTAGGCGAGTTTGGTGATCGTTACTTC 1559 ||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 1491 TGTCTGAACCAAGAATTCAGAGTTATACCGGGCTTAGGCGAGTTTGGCGATCGTTACTTC 1550 Query 1560 GGCACCGACGAGGAAGACCAGTAGCCACCACTCAACACTGTGACCGGTTTCGAGCAAATG 1619 |||||||||||||||||||||||||||||||||||||||||||| |||||| | || | Sbjct 1551 GGCACCGACGAGGAAGACCAGTAGCCACCACTCAACACTGTGACTGGTTTC-A--AAG-G 1606 Query 1620 AAACAGCCTAAATTCTATGACTAGAGCGACACTAGAGGCACGTGTATGTCTTTGTA---- 1675 ||| |||||||||| |||||||||||||||| ||||||||| || ||||||||||| Sbjct 1607 AAA-AGCCTAAATT-TATGACTAGAGCGACAGTAGAGGCACTTGCATGTCTTTGTAGTTT 1664 Query 1676 ---CTAAAGAACCATTCTCTTAT-GATTTATGAAGCTCTTCTTGCTTACTCGAATTACTT 1731 |||||||| | || |||||| | |||||||||||| ||||||||||| |||||| || Sbjct 1665 GTGCTAAAGAATCTTTATCTTATTG-TTTATGAAGCTCCTCTTGCTTACTTGAATTATTT 1723 Query 1732 TTGAAAA-CTTAAGTTAATTTTCTGATTAAGGATAA-GAAATAGGGA-A-TGCTAGTTTT 1787 ||||||| || | ||||||||||| ||||| | || || | |||| | |||||||||| Sbjct 1724 TTGAAAAACT-ACGTTAATTTTCTCATTAAAAA-AATGA--TCGGGACAATGCTAGTTTT 1779 Query 1788 CTAAACCGGCGGAGAAAAGACATAACCAATCCTTTTATACATGATTTTGGA-AATCGTA 1845 ||||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1780 CTAAACCGGTGGA-AAAAGACATAACCAATCCTTTTATACATGATTTTG-ACAATCGTA 1836 > AT3G27190.1 | Symbols: UKL2 | uridine kinase-like 2 | chr3:10039234-10043066 REVERSE LENGTH=1871 Length=1871 Score = 1563 bits (846), Expect = 0.0 Identities = 1266/1469 (86%), Gaps = 27/1469 (2%) Strand=Plus/Plus Query 112 CAATGCCGGAGGATTCTTCTTCAATAGACTACG-CGATGGAGAAGGCATCGGGGCCTCAC 170 ||||||| || ||||| | | || ||||| | | |||||||||||||||||||||||| Sbjct 148 CAATGCCAGAAGATTCAACGGCGATTGACTATGTC-ATGGAGAAGGCATCGGGGCCTCAC 206 Query 171 TTCTCCGGTCTTCG-CTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCCGCCGT 229 |||||||||||||| ||| ||||| | | ||| ||||||||| | || |||| |||| Sbjct 207 TTCTCCGGTCTTCGCCTT-GACGGTC-T-TCT-TTCTTCTCCGTCGAAATCCT---CCGT 259 Query 230 CTCTTCACTTTCTCACCTCCGATCAGCCGTTTCTTCCTCTTCTCCGGCTTCTTCCGATCC 289 |||||| | ||||||| |||| | | | | ||| |||| | ||||| | |||||| Sbjct 260 CTCTTCTCCTTCTCACTTCCG-TTTG-AG-TAATTCTTCTTTTTCGGCTACCGACGATCC 316 Query 290 CGACGCTCC-CAAACAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTAAAA 348 || |||||| | | ||||||||| ||||||| ||| |||||||||| ||||||||||| | Sbjct 317 CGCCGCTCCTC-ATCAGCCCTTCGTTATCGGAGTTACTGGTGGTACAGCTTCTGGTAAGA 375 Query 349 CCACAGTCTGCGATATGATAATCCAGCAACTTCATGATCATCGTGTTGTTCTAGTTAATC 408 | || || || || ||||||||||||||||||||||||||||| ||||| ||||||| | Sbjct 376 CGACGGTATGTGACATGATAATCCAGCAACTTCATGATCATCGCATTGTTTTAGTTAACC 435 Query 409 AGGATTCCTTTTATCGTGGTTTGACATCTG-AGGAGTTGCAGCGTGTGCAAGAGTACAAC 467 ||||||| ||||| |||||||||||||||| || | ||| ||| ||| ||||| ||||| Sbjct 436 AGGATTCGTTTTACCGTGGTTTGACATCTGAAGAACTTG-AGCATGTACAAGAATACAAT 494 Query 468 TTTGATCATCCCGATGCTTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACT-CTCAA 526 ||||||||||| ||||| |||||||||||||||||||||||||| | ||| | | ||||| Sbjct 495 TTTGATCATCCTGATGCCTTTGACACTGAGCAGCTTTTGCATTGCGTTGACA-TACTCAA 553 Query 527 GAGCGGGCAACCCTATCAAGTTCCAATCTACGACTTTAAGACCCATCAACGTAGATCT-G 585 ||| ||||||||||||||| ||||||| || ||||| |||||||||||||||| | | | Sbjct 554 GAGTGGGCAACCCTATCAAATTCCAATTTATGACTTCAAGACCCATCAACGTA-AAGTAG 612 Query 586 ATACTTTCCGCCAGGTCAATGCTTCTGATGTTATAATATTGGAAGGGATTCTAGTTTTCC 645 || |||| |||||||||||||||| |||||| || || |||||||||||||||||||| | Sbjct 613 ATGCTTTTCGCCAGGTCAATGCTTGTGATGTCATCATTTTGGAAGGGATTCTAGTTTTTC 672 Query 646 ATGACTCACGAGTTCGGAATCTGATGAATATGAAGGTCTTTGTTGATACAGATGCTGATG 705 ||||||||||||||||| | || |||||||||||| |||| ||||| ||||||||||||| Sbjct 673 ATGACTCACGAGTTCGGGACCTAATGAATATGAAGATCTTCGTTGACACAGATGCTGATG 732 Query 706 TAAGGCTTGCTCGCAGAATCAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTCTG 765 | ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| Sbjct 733 TGAGGCTTGCTCGCAGAATCAGGCGTGACACGGTTGAGAGGGGTAGGGATGTTGACTCTG 792 Query 766 TGCTTGAACAGTATGCAAAGTTTGTGAAGCCGGCATTTGATGACTTTGTGCTCCCCTCGA 825 ||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| | Sbjct 793 TGCTTGAACAGTATGCAAAGTTTGTGAAGCCTGCGTTTGATGATTTTGTGCTCCCCTCAA 852 Query 826 AGAAATATGCTGACGTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTTGA 885 ||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||| Sbjct 853 AGAAATATGCTGATGTGATCATTCCACGAGGAGGTGACAATCACGTTGCAGTTGATTTGA 912 Query 886 TTACACAACATATCCACACAAAACTTGGGCAGCATGATCTGTGCAAAATCTACCCAAATG 945 || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 913 TTGTGCAACATATCCACACAAAACTTGGGCAACATGATCTCTGCAAAATCTACCCAAATG 972 Query 946 TTTACGTCATCCAATCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAGAAGG 1005 ||| || || || ||||||||||||||||||||||||| || || ||||| ||||||| Sbjct 973 TTTTTGTTATTGAAACAACATTTCAGATAAGAGGCATGCACACTCTCATTCGAGAGAAGG 1032 Query 1006 ACATATCAAAGCATGATTTTGTGTTTTATTCAGATCGACTCATTCGTCTGGTTGTGGAGC 1065 |||||||||| ||||| || |||||||| |||||||| ||||||||| |||||||||||| Sbjct 1033 ACATATCAAAACATGACTTCGTGTTTTACTCAGATCGCCTCATTCGTTTGGTTGTGGAGC 1092 Query 1066 ATGGTCTTGGTCATTTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGCGCTGTAT 1125 |||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||| | Sbjct 1093 ATGGTCTTGGCCATTTGCCTTTCACTGAGAAACAAGTAGTTACTCCGACAGGATCTGTGT 1152 Query 1126 ATACCGGTGTTGATTTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGAAA 1185 ||| |||||||||||||||||||||||| |||||||||||| | ||| |||||||||||| Sbjct 1153 ATAGCGGTGTTGATTTCTGCAAGAAACTCTGTGGGGTCTCAGTCATTCGAAGTGGTGAAA 1212 Query 1186 GCATGGAAAATGCATTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATCC 1245 |||||||||| ||||| ||||| || |||||||| ||||| ||||||||||||||||||| Sbjct 1213 GCATGGAAAACGCATTGCGCGCATGTTGCAAAGGGATTAAGATAGGGAAGATTCTCATCC 1272 Query 1246 ACCGTGATGGCGACAATGGAAAACAGCTTATTTATGAGAAGCTTCCTCAC-GACATCTCT 1304 | ||||| || |||||||||| |||||||| || ||||||||||| | || ||||| Sbjct 1273 ATCGTGACGGAGACAATGGAATGCAGCTTATATACGAGAAGCTTCCA-AGTGATATCTCC 1331 Query 1305 GAACGCCATGTCCTGCT-TCTAGATCCTGTCTTAGCCACAGGTAACTCTGCAAATCAAGC 1363 || || ||||||||||| | |||||||||| |||| ||||||||||||||||||||| || Sbjct 1332 GAGCGTCATGTCCTGCTAT-TAGATCCTGTTTTAGGCACAGGTAACTCTGCAAATCAGGC 1390 Query 1364 CATTGAATTACTTATACAGAAAGGAGTTCCTGAATCTCACATTATATTCCTCAACCTTAT 1423 || ||| |||| |||||||||||||| |||||| | ||||||||||||||||| ||||| Sbjct 1391 GATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCCTCAATCTTAT 1450 Query 1424 CTCGGCACCGGAGGGAATCCACTGTGTCTGCAAACGTTTTCCAGCA-TTGAAGATAGTGA 1482 ||| || || || |||||||| || ||||||||||| || ||| | |||||||| |||| Sbjct 1451 CTCAGCGCCAGAAGGAATCCATTGCGTCTGCAAACGGTTCCCAA-AGTTGAAGATTGTGA 1509 Query 1483 CGTCTGAAATAGACCAGTGTCTAAACCAAGAGTTCCGAGTTATACCGGGCTTAGGCGAGT 1542 |||| ||||| || |||||||| ||| |||||||| | |||||||| ||||| || |||| Sbjct 1510 CGTCAGAAATCGATCAGTGTCTGAACGAAGAGTTCAGGGTTATACCAGGCTTGGGTGAGT 1569 Query 1543 TTGGTGATCGTTACTTCGGCACCGACGAG 1571 |||||||||| ||||| || ||||||||| Sbjct 1570 TTGGTGATCGCTACTTTGGTACCGACGAG 1598 > AT5G34560.1 | Symbols: | pseudogene, uridine kinase/uracil phosphoribosyl transferas -related, similar to uridine kinase/uracil phosphoribosyl transferas, putative; blastp match of 57% identity and 2.2e-07 P-value to GP|5107696|pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant C128v, Bound To Product Uridine-1-Monophosphate (Ump) >GP|5107697|pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mut-TRUNCATED- | chr5:12916588-12917571 REVERSE LENGTH=984 Length=984 Score = 100 bits (54), Expect = 4e-20 Identities = 59/61 (97%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 1120 CTGTATATACCGGTGTTGATTTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAA-GT 1178 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 104 CTGTCTATACCGGTGTTGATTTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAAGT 163 Query 1179 G 1179 | Sbjct 164 G 164 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91314791355 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5