BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493890
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40870.1 | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine kin... 2739 0.0
AT3G27190.1 | Symbols: UKL2 | uridine kinase-like 2 | chr3:1003... 1563 0.0
AT5G34560.1 | Symbols: | pseudogene, uridine kinase/uracil pho... 100 4e-20
> AT5G40870.1 | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine kinase/uracil
phosphoribosyltransferase 1 | chr5:16374908-16378652
FORWARD LENGTH=1842
Length=1842
Score = 2739 bits (1483), Expect = 0.0
Identities = 1740/1859 (94%), Gaps = 37/1859 (2%)
Strand=Plus/Plus
Query 1 CGTTGAACAGAATCGTTGTCACTTG-TCAGTCTTCACTACGGAGCTGttttttttCGATT 59
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 CGTTGAACAGAATCGTTGTCACTTGTTCAGTCTTCACTACGGAGCTGTTTTTTTTCGATT 60
Query 60 CGCCGGAAAAATCACAAATTTCAAATTCTGCAACCACCGATTCATCGGAATCCAATGCCG 119
|||||||||||||| ||| | |||| ||| |||||||| || |||| ||||||||||||
Sbjct 61 CGCCGGAAAAATCATAAAATCCAAA-TCTACAACCACCTTTTTATCGCAATCCAATGCCG 119
Query 120 GAGGATTCTTCTTCAATAGACTACGCGATGGAGAAGGCATCGGGGCCTCACTTCTCCGGT 179
|| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 GAAGATTCTTCTTCTTTAGACTACGCGATGGAGAAGGCATCAGGGCCTCACTTCTCCGGT 179
Query 180 CTTCGCTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCCGCCGTCTCTTCACTT 239
|||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 180 CTTCGCTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCCGTCG--TC-T--C-- 232
Query 240 TCTCACCTCCGATCAGCCGTTTCTTCCTCTTCTCCGGCTTCTTCCGATCCCGACGCTCCC 299
| ||| ||||||||||| |||||||| ||||||||| |||||||||||||||| || ||
Sbjct 233 T-TCA-CTCCGATCAGCTGTTTCTTCTTCTTCTCCGTCTTCTTCCGATCCCGAAGCGCCT 290
Query 300 AAACAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTAAAACCACAGTCTGC 359
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 291 AAGCAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTAAGACCACGGTCTGT 350
Query 360 GATATGATAATCCAGCAACTTCATGATCATCGTGTTGTTCTAGTTAATCAGGATTCCTTT 419
|| ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 351 GACATGATAATCCAGCAACTTCATGACCATCGTGTCGTTTTAGTTAATCAGGATTCCTTT 410
Query 420 TATCGTGGTTTGACATCTGAGGAGTTGCAGCGTGTGCAAGAGTACAACTTTGATCATCCC 479
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 411 TATCGTGGTTTGACATCTGAGGAGTTGCAGCGTGTGCAAGAGTATAACTTTGATCATCCT 470
Query 480 GATGCTTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACTCTCAAGAGCGGGCAACCC 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GATGCGTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACTCTCAAGAGCGGGCAACCC 530
Query 540 TATCAAGTTCCAATCTACGACTTTAAGACCCATCAACGTAGATCTGATACTTTCCGCCAG 599
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 531 TATCAAGTTCCAATCTATGACTTTAAGACTCATCAACGTAGATCTGATACTTTCCGCCAG 590
Query 600 GTCAATGCTTCTGATGTTATAATATTGGAAGGGATTCTAGTTTTCCATGACTCACGAGTT 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GTCAATGCTTCTGATGTAATAATATTGGAAGGGATTCTAGTTTTCCATGACTCACGAGTT 650
Query 660 CGGAATCTGATGAATATGAAGGTCTTTGTTGATACAGATGCTGATGTAAGGCTTGCTCGC 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 651 CGGAATCTGATGAATATGAAGATCTTTGTTGATACAGATGCTGATGTAAGGCTTGCTCGC 710
Query 720 AGAATCAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTCTGTGCTTGAACAGTAT 779
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AGAATTAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTCTGTGCTTGAACAGTAT 770
Query 780 GCAAAGTTTGTGAAGCCGGCATTTGATGACTTTGTGCTCCCCTCGAAGAAATATGCTGAC 839
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 771 GCAAAGTTTGTGAAGCCGGCATTTGATGACTTCGTGCTCCCTTCAAAGAAATATGCTGAC 830
Query 840 GTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTTGATTACACAACATATC 899
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 831 GTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTTGATTACGCAACATATC 890
Query 900 CACACAAAACTTGGGCAGCATGATCTGTGCAAAATCTACCCAAATGTTTACGTCATCCAA 959
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 891 CACACAAAACTTGGGCAGCATGATCTCTGCAAAATCTACCCAAATGTTTATGTTATCCAG 950
Query 960 TCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAGAAGGACATATCAAAGCAT 1019
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 951 TCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAAAAGGACATATCAAAGCAT 1010
Query 1020 GATTTTGTGTTTTATTCAGATCGACTCATTCGTCTGGTTGTGGAGCATGGTCTTGGTCAT 1079
|| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1011 GACTTTGTGTTTTATTCAGATAGACTCATTCGTCTGGTCGTGGAGCATGGTCTTGGTCAT 1070
Query 1080 TTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGCGCTGTATATACCGGTGTTGAT 1139
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1071 TTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGAGCTGTATATACCGGTGTTGAT 1130
Query 1140 TTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGAAAGCATGGAAAATGCA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGAAAGCATGGAAAATGCA 1190
Query 1200 TTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATCCACCGTGATGGCGAC 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATCCACCGTGATGGCGAT 1250
Query 1260 AATGGAAAACAGCTTATTTATGAGAAGCTTCCTCACGACATCTCTGAACGCCATGTCCTG 1319
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1251 AATGGAAAACAGCTTATTTATGAGAAGCTTCCTCACGACATATCTGAACGCCATGTCCTG 1310
Query 1320 CTTCTAGATCCTGTCTTAGCCACAGGTAACTCTGCAAATCAAGCCATTGAATTACTTATA 1379
|||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||
Sbjct 1311 CTTCTAGATCCTGTCTTAGCCACAGGTAACTCGGCTAATCAAGCCATTGAACTACTCATA 1370
Query 1380 CAGAAAGGAGTTCCTGAATCTCACATTATATTCCTCAACCTTATCTCGGCACCGGAGGGA 1439
|||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1371 CAGAAAGGTGTTCCTGAAGCTCACATTATATTCCTCAACCTTATATCGGCGCCGGAGGGA 1430
Query 1440 ATCCACTGTGTCTGCAAACGTTTTCCAGCATTGAAGATAGTGACGTCTGAAATAGACCAG 1499
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1431 ATCCACTGTGTCTGCAAACGTTTTCCAGCATTGAAAATTGTGACGTCTGAAATAGACCAA 1490
Query 1500 TGTCTAAACCAAGAGTTCCGAGTTATACCGGGCTTAGGCGAGTTTGGTGATCGTTACTTC 1559
||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1491 TGTCTGAACCAAGAATTCAGAGTTATACCGGGCTTAGGCGAGTTTGGCGATCGTTACTTC 1550
Query 1560 GGCACCGACGAGGAAGACCAGTAGCCACCACTCAACACTGTGACCGGTTTCGAGCAAATG 1619
|||||||||||||||||||||||||||||||||||||||||||| |||||| | || |
Sbjct 1551 GGCACCGACGAGGAAGACCAGTAGCCACCACTCAACACTGTGACTGGTTTC-A--AAG-G 1606
Query 1620 AAACAGCCTAAATTCTATGACTAGAGCGACACTAGAGGCACGTGTATGTCTTTGTA---- 1675
||| |||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct 1607 AAA-AGCCTAAATT-TATGACTAGAGCGACAGTAGAGGCACTTGCATGTCTTTGTAGTTT 1664
Query 1676 ---CTAAAGAACCATTCTCTTAT-GATTTATGAAGCTCTTCTTGCTTACTCGAATTACTT 1731
|||||||| | || |||||| | |||||||||||| ||||||||||| |||||| ||
Sbjct 1665 GTGCTAAAGAATCTTTATCTTATTG-TTTATGAAGCTCCTCTTGCTTACTTGAATTATTT 1723
Query 1732 TTGAAAA-CTTAAGTTAATTTTCTGATTAAGGATAA-GAAATAGGGA-A-TGCTAGTTTT 1787
||||||| || | ||||||||||| ||||| | || || | |||| | ||||||||||
Sbjct 1724 TTGAAAAACT-ACGTTAATTTTCTCATTAAAAA-AATGA--TCGGGACAATGCTAGTTTT 1779
Query 1788 CTAAACCGGCGGAGAAAAGACATAACCAATCCTTTTATACATGATTTTGGA-AATCGTA 1845
||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1780 CTAAACCGGTGGA-AAAAGACATAACCAATCCTTTTATACATGATTTTG-ACAATCGTA 1836
> AT3G27190.1 | Symbols: UKL2 | uridine kinase-like 2 | chr3:10039234-10043066
REVERSE LENGTH=1871
Length=1871
Score = 1563 bits (846), Expect = 0.0
Identities = 1266/1469 (86%), Gaps = 27/1469 (2%)
Strand=Plus/Plus
Query 112 CAATGCCGGAGGATTCTTCTTCAATAGACTACG-CGATGGAGAAGGCATCGGGGCCTCAC 170
||||||| || ||||| | | || ||||| | | ||||||||||||||||||||||||
Sbjct 148 CAATGCCAGAAGATTCAACGGCGATTGACTATGTC-ATGGAGAAGGCATCGGGGCCTCAC 206
Query 171 TTCTCCGGTCTTCG-CTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCCGCCGT 229
|||||||||||||| ||| ||||| | | ||| ||||||||| | || |||| ||||
Sbjct 207 TTCTCCGGTCTTCGCCTT-GACGGTC-T-TCT-TTCTTCTCCGTCGAAATCCT---CCGT 259
Query 230 CTCTTCACTTTCTCACCTCCGATCAGCCGTTTCTTCCTCTTCTCCGGCTTCTTCCGATCC 289
|||||| | ||||||| |||| | | | | ||| |||| | ||||| | ||||||
Sbjct 260 CTCTTCTCCTTCTCACTTCCG-TTTG-AG-TAATTCTTCTTTTTCGGCTACCGACGATCC 316
Query 290 CGACGCTCC-CAAACAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTAAAA 348
|| |||||| | | ||||||||| ||||||| ||| |||||||||| ||||||||||| |
Sbjct 317 CGCCGCTCCTC-ATCAGCCCTTCGTTATCGGAGTTACTGGTGGTACAGCTTCTGGTAAGA 375
Query 349 CCACAGTCTGCGATATGATAATCCAGCAACTTCATGATCATCGTGTTGTTCTAGTTAATC 408
| || || || || ||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 376 CGACGGTATGTGACATGATAATCCAGCAACTTCATGATCATCGCATTGTTTTAGTTAACC 435
Query 409 AGGATTCCTTTTATCGTGGTTTGACATCTG-AGGAGTTGCAGCGTGTGCAAGAGTACAAC 467
||||||| ||||| |||||||||||||||| || | ||| ||| ||| ||||| |||||
Sbjct 436 AGGATTCGTTTTACCGTGGTTTGACATCTGAAGAACTTG-AGCATGTACAAGAATACAAT 494
Query 468 TTTGATCATCCCGATGCTTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACT-CTCAA 526
||||||||||| ||||| |||||||||||||||||||||||||| | ||| | | |||||
Sbjct 495 TTTGATCATCCTGATGCCTTTGACACTGAGCAGCTTTTGCATTGCGTTGACA-TACTCAA 553
Query 527 GAGCGGGCAACCCTATCAAGTTCCAATCTACGACTTTAAGACCCATCAACGTAGATCT-G 585
||| ||||||||||||||| ||||||| || ||||| |||||||||||||||| | | |
Sbjct 554 GAGTGGGCAACCCTATCAAATTCCAATTTATGACTTCAAGACCCATCAACGTA-AAGTAG 612
Query 586 ATACTTTCCGCCAGGTCAATGCTTCTGATGTTATAATATTGGAAGGGATTCTAGTTTTCC 645
|| |||| |||||||||||||||| |||||| || || |||||||||||||||||||| |
Sbjct 613 ATGCTTTTCGCCAGGTCAATGCTTGTGATGTCATCATTTTGGAAGGGATTCTAGTTTTTC 672
Query 646 ATGACTCACGAGTTCGGAATCTGATGAATATGAAGGTCTTTGTTGATACAGATGCTGATG 705
||||||||||||||||| | || |||||||||||| |||| ||||| |||||||||||||
Sbjct 673 ATGACTCACGAGTTCGGGACCTAATGAATATGAAGATCTTCGTTGACACAGATGCTGATG 732
Query 706 TAAGGCTTGCTCGCAGAATCAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTCTG 765
| ||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 733 TGAGGCTTGCTCGCAGAATCAGGCGTGACACGGTTGAGAGGGGTAGGGATGTTGACTCTG 792
Query 766 TGCTTGAACAGTATGCAAAGTTTGTGAAGCCGGCATTTGATGACTTTGTGCTCCCCTCGA 825
||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
Sbjct 793 TGCTTGAACAGTATGCAAAGTTTGTGAAGCCTGCGTTTGATGATTTTGTGCTCCCCTCAA 852
Query 826 AGAAATATGCTGACGTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTTGA 885
||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 853 AGAAATATGCTGATGTGATCATTCCACGAGGAGGTGACAATCACGTTGCAGTTGATTTGA 912
Query 886 TTACACAACATATCCACACAAAACTTGGGCAGCATGATCTGTGCAAAATCTACCCAAATG 945
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 913 TTGTGCAACATATCCACACAAAACTTGGGCAACATGATCTCTGCAAAATCTACCCAAATG 972
Query 946 TTTACGTCATCCAATCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAGAAGG 1005
||| || || || ||||||||||||||||||||||||| || || ||||| |||||||
Sbjct 973 TTTTTGTTATTGAAACAACATTTCAGATAAGAGGCATGCACACTCTCATTCGAGAGAAGG 1032
Query 1006 ACATATCAAAGCATGATTTTGTGTTTTATTCAGATCGACTCATTCGTCTGGTTGTGGAGC 1065
|||||||||| ||||| || |||||||| |||||||| ||||||||| ||||||||||||
Sbjct 1033 ACATATCAAAACATGACTTCGTGTTTTACTCAGATCGCCTCATTCGTTTGGTTGTGGAGC 1092
Query 1066 ATGGTCTTGGTCATTTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGCGCTGTAT 1125
|||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||| |
Sbjct 1093 ATGGTCTTGGCCATTTGCCTTTCACTGAGAAACAAGTAGTTACTCCGACAGGATCTGTGT 1152
Query 1126 ATACCGGTGTTGATTTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGAAA 1185
||| |||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||
Sbjct 1153 ATAGCGGTGTTGATTTCTGCAAGAAACTCTGTGGGGTCTCAGTCATTCGAAGTGGTGAAA 1212
Query 1186 GCATGGAAAATGCATTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATCC 1245
|||||||||| ||||| ||||| || |||||||| ||||| |||||||||||||||||||
Sbjct 1213 GCATGGAAAACGCATTGCGCGCATGTTGCAAAGGGATTAAGATAGGGAAGATTCTCATCC 1272
Query 1246 ACCGTGATGGCGACAATGGAAAACAGCTTATTTATGAGAAGCTTCCTCAC-GACATCTCT 1304
| ||||| || |||||||||| |||||||| || ||||||||||| | || |||||
Sbjct 1273 ATCGTGACGGAGACAATGGAATGCAGCTTATATACGAGAAGCTTCCA-AGTGATATCTCC 1331
Query 1305 GAACGCCATGTCCTGCT-TCTAGATCCTGTCTTAGCCACAGGTAACTCTGCAAATCAAGC 1363
|| || ||||||||||| | |||||||||| |||| ||||||||||||||||||||| ||
Sbjct 1332 GAGCGTCATGTCCTGCTAT-TAGATCCTGTTTTAGGCACAGGTAACTCTGCAAATCAGGC 1390
Query 1364 CATTGAATTACTTATACAGAAAGGAGTTCCTGAATCTCACATTATATTCCTCAACCTTAT 1423
|| ||| |||| |||||||||||||| |||||| | ||||||||||||||||| |||||
Sbjct 1391 GATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCCTCAATCTTAT 1450
Query 1424 CTCGGCACCGGAGGGAATCCACTGTGTCTGCAAACGTTTTCCAGCA-TTGAAGATAGTGA 1482
||| || || || |||||||| || ||||||||||| || ||| | |||||||| ||||
Sbjct 1451 CTCAGCGCCAGAAGGAATCCATTGCGTCTGCAAACGGTTCCCAA-AGTTGAAGATTGTGA 1509
Query 1483 CGTCTGAAATAGACCAGTGTCTAAACCAAGAGTTCCGAGTTATACCGGGCTTAGGCGAGT 1542
|||| ||||| || |||||||| ||| |||||||| | |||||||| ||||| || ||||
Sbjct 1510 CGTCAGAAATCGATCAGTGTCTGAACGAAGAGTTCAGGGTTATACCAGGCTTGGGTGAGT 1569
Query 1543 TTGGTGATCGTTACTTCGGCACCGACGAG 1571
|||||||||| ||||| || |||||||||
Sbjct 1570 TTGGTGATCGCTACTTTGGTACCGACGAG 1598
> AT5G34560.1 | Symbols: | pseudogene, uridine kinase/uracil phosphoribosyl
transferas -related, similar to uridine kinase/uracil
phosphoribosyl transferas, putative; blastp match of
57% identity and 2.2e-07 P-value to GP|5107696|pdb|1UPU|D Chain
D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
>GP|5107697|pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase,
Mut-TRUNCATED- | chr5:12916588-12917571
REVERSE LENGTH=984
Length=984
Score = 100 bits (54), Expect = 4e-20
Identities = 59/61 (97%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 1120 CTGTATATACCGGTGTTGATTTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAA-GT 1178
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 104 CTGTCTATACCGGTGTTGATTTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAAGT 163
Query 1179 G 1179
|
Sbjct 164 G 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91314791355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5